LOCUS       NM_027478               1606 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus transmembrane protein 230 (Tmem230), transcript
            variant 1, mRNA.
ACCESSION   NM_027478
VERSION     NM_027478.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Ballif,B.A., Villen,J., Beausoleil,S.A., Schwartz,D. and Gygi,S.P.
  TITLE     Phosphoproteomic analysis of the developing mouse brain
  JOURNAL   Mol Cell Proteomics 3 (11), 1093-1101 (2004)
   PUBMED   15345747
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY278953.1, AK017729.1, BQ922165.1 and BY388388.1.
            
            On Nov 22, 2008 this sequence version replaced NM_027478.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC033429.1, AK017729.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-116               BY278953.1         2-117
            117-491             AK017729.1         112-486
            492-819             BQ922165.1         396-723
            820-1388            AK017729.1         814-1382
            1389-1389           BY388388.1         211-211
            1390-1590           AK017729.1         1384-1584
            1591-1606           BY388388.1         416-431
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 64.15 cM"
     gene            1..1606
                     /gene="Tmem230"
                     /gene_synonym="5730494N06Rik"
                     /note="transmembrane protein 230"
                     /db_xref="GeneID:70612"
                     /db_xref="MGI:MGI:1917862"
     exon            1..216
                     /gene="Tmem230"
                     /gene_synonym="5730494N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            217..335
                     /gene="Tmem230"
                     /gene_synonym="5730494N06Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             237..599
                     /gene="Tmem230"
                     /gene_synonym="5730494N06Rik"
                     /note="UPF0414 transmembrane protein C20orf30 homolog"
                     /codon_start=1
                     /product="transmembrane protein 230"
                     /protein_id="NP_081754.2"
                     /db_xref="CCDS:CCDS16770.1"
                     /db_xref="GeneID:70612"
                     /db_xref="MGI:MGI:1917862"
                     /translation="MMPSRTNLATGLPSSKVKYSRLASTDDGYIDLQFKKSPPKIPYK
                     AIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYY
                     ASKGYRGYSYDDIPDFDD"
     exon            336..458
                     /gene="Tmem230"
                     /gene_synonym="5730494N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            459..1593
                     /gene="Tmem230"
                     /gene_synonym="5730494N06Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1569..1574
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem230"
                     /gene_synonym="5730494N06Rik"
                     /note="hexamer: TATAAA"
     polyA_site      1593
                     /gene="Tmem230"
                     /gene_synonym="5730494N06Rik"
                     /note="major polyA site"
ORIGIN      
        1 gtccttaaga ccgccccttc cgcttggctg ttgagcgagc cttgcgagcg cgcctaacgg
       61 agaacgggga gcgcagcgcg ggtagggggc gggcgcgcgc tcccggaagc cagccgcgag
      121 acctggccct gccaccgagg ctgcttcccg gagacagtta gttcacgttg gcggcggcgg
      181 agggcgacga gaggttgtcc acagcgccac gcttagacta gctgtgttac tctgttatga
      241 tgccgtctcg taccaacctg gcaactggac tccccagcag taaagtcaaa tattcaaggc
      301 ttgccagcac agacgatggc tacattgacc ttcagtttaa aaaaagccct cctaagatcc
      361 cttataaggc cattgccctt gctaccgtgc tgtttttgat tggcaccttt ctcataatca
      421 taggctctct cctgctgtcg ggctacatca gcaaaggggg ggcagaccga gccgttcctg
      481 tcctcatcat aggcattttg gtgttcctac cgggatttta ccatttgcgc atcgcctatt
      541 atgcatccaa gggctaccgg ggttactcct acgatgacat tccagacttt gatgactagc
      601 cttcgcctca gccttgagaa gagtcgcaca cagtgcaacc actttaagac atcaagcaag
      661 aactctggct aagggctgaa gaagtctaca atttgcagat gtttagcaaa acaatggcca
      721 gattgtatga gtccttctcc aaaacgctcc tgctttataa ttagctaatt aggacatggt
      781 atgttttcat ctcctggccc tggctaaact tgacaagttt ttccacatga gtgtgcatca
      841 tgtaagagtt gtgaagctaa ctgtctggga aggcagcctg ttctatagtg gaaggtgtta
      901 ccctccttag agctgaacct ttcttttgtc ttccattgtc tgcttggttt tgtagcataa
      961 tgggaaatgt attgtctagt ttcttattac taagtaattt atttttaaaa ttacctatct
     1021 tatctctcac cctctcctct accattatat cctagtaaaa ttaaagtatc tgtcttacct
     1081 tcatatgctc ctccaccttc atatcccagt aaaaccaaat atctgtagat ccatctctaa
     1141 ttggcttttt ttacattgac agcaacctgg aatttttaaa ccatgaagct gggtattatg
     1201 atcccagtac ttgggaggca gagccaggtg gatctctatg agttcaaggc cagcctggtc
     1261 tacatagagt tttacgacaa ctagggctac ctagtgagac cctgtctcaa gaaaagggaa
     1321 acttcctctg gtttctccat agtttgccta ctacaaaact caggtgaatc tgtcctttgt
     1381 aggtcaagag attgtgtgaa tcatacctca aggactagac tttggctgtt tcttcgtaaa
     1441 actgtagata agtgtactta gagtttatag ccctactgct ggctggtact atgatatcat
     1501 tctgctaaag attacaagac ttggccaaga tccctgaaaa tgtattaagt caaatctggt
     1561 tctcagctta taaaaagtga caattttttc taaaaaaaaa aaaaaa
//
