LOCUS       NM_001358814            3520 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus transmembrane protein 200A (Tmem200a), transcript
            variant 2, mRNA.
ACCESSION   NM_001358814 XM_006512919
VERSION     NM_001358814.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3520)
  AUTHORS   Qu,F., Li,W., Xu,J., Zhang,R., Ke,J., Ren,X., Meng,X., Qin,L.,
            Zhang,J., Lu,F., Zhou,X., Luo,X., Zhang,Z., Wang,M., Wu,G., Pei,D.,
            Chen,J., Cui,G., Suo,S. and Peng,G.
  TITLE     Three-dimensional molecular architecture of mouse organogenesis
  JOURNAL   Nat Commun 14 (1), 4599 (2023)
   PUBMED   37524711
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3520)
  AUTHORS   Boyle,M.P., Bernard,A., Thompson,C.L., Ng,L., Boe,A., Mortrud,M.,
            Hawrylycz,M.J., Jones,A.R., Hevner,R.F. and Lein,E.S.
  TITLE     Cell-type-specific consequences of Reelin deficiency in the mouse
            neocortex, hippocampus, and amygdala
  JOURNAL   J Comp Neurol 519 (11), 2061-2089 (2011)
   PUBMED   21491433
REFERENCE   3  (bases 1 to 3520)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK048673.1 and AI482494.1.
            
            On Dec 9, 2017 this sequence version replaced XM_006512919.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK048673.1, FO714195.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3357              AK048673.1         1-3357
            3358-3520           AI482494.1         1-163               c
FEATURES             Location/Qualifiers
     source          1..3520
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 13.03 cM"
     gene            1..3520
                     /gene="Tmem200a"
                     /gene_synonym="C030003D03Rik"
                     /note="transmembrane protein 200A"
                     /db_xref="GeneID:77220"
                     /db_xref="MGI:MGI:1924470"
     exon            1..128
                     /gene="Tmem200a"
                     /gene_synonym="C030003D03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            129..310
                     /gene="Tmem200a"
                     /gene_synonym="C030003D03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            311..3514
                     /gene="Tmem200a"
                     /gene_synonym="C030003D03Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             327..1802
                     /gene="Tmem200a"
                     /gene_synonym="C030003D03Rik"
                     /codon_start=1
                     /product="transmembrane protein 200A"
                     /protein_id="NP_001345743.1"
                     /db_xref="CCDS:CCDS23755.1"
                     /db_xref="GeneID:77220"
                     /db_xref="MGI:MGI:1924470"
                     /translation="MIATGGVITGLAALKRQDSARSQQHINLSPLPATQDQKPVRRRP
                     RADVVVVRGKIRLYSPSGFFLILGVLVSIIGIAMAVLGYWPQKEHFIDAETTLSTNET
                     QVVRNQGGVVVRFFEQHLHSDKMKMLGPFTMGIGIFIFICANAILHENRDKETKIIHM
                     RDIYSTVIDIHTLRLKEQKQANGLYAGLLGDTEVKQNGSPCASRLAATTLASFSGMRN
                     SFRVDSSVEEDELMLTESKSLGHLMPPLLSDSAVSVFGLYPPPAKATDDKASSSKKCD
                     TKSIVSSSISAFTLPVIKLNNCVIDEPSIDSITEVADNLKTRSRNLSMDSLVVPLPSS
                     GESFQPAVTLLPRNNSVGESLSSQYKSSVALGPGTGQLLSPGAARRQFGSNTSLHLLS
                     SHSKSLDLDRGPSTLTVHAEQRKHPSWPRLDRSNSKGYMRLENKEDPMDRLLVPQTAI
                     KKDFTNKEKLLMISRSHNNLSFEHDEFLSNNLKRGTSETRF"
     regulatory      3429..3434
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem200a"
                     /gene_synonym="C030003D03Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3449
                     /gene="Tmem200a"
                     /gene_synonym="C030003D03Rik"
                     /note="major polyA site"
     regulatory      3489..3494
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem200a"
                     /gene_synonym="C030003D03Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3514
                     /gene="Tmem200a"
                     /gene_synonym="C030003D03Rik"
                     /note="major polyA site"
ORIGIN      
        1 agttcttatt gagacaggag gggcaggtat ctcccgttct ggaactcgcg tccgacggtg
       61 atgagaagcg agtgggtgtg tccgcttccg cccgctggcc ttcagatgaa gcagatcgcc
      121 tggaagcgcc ggagccccac ggggatgggg agtgagaccg tggctgcccg cagctgccca
      181 gattcctcct gacgcccccg accccgccgc ctccctcgct ggtccccgga ggcgcacgct
      241 gtcgcgacag ctgtgagagc gaagagcccg gagaggccac cggagccccg agaccaggcg
      301 ctcaggacag agcacaagag gaaactatga tagccactgg tggggtcatc accggcctgg
      361 cggccttgaa gcggcaggac tctgccaggt ctcagcaaca cattaacctc agcccactgc
      421 ctgctaccca ggatcagaaa cccgtcagac ggcgcccacg agcagatgtt gtggtggtcc
      481 gtgggaaaat ccgactttat tctccatctg gctttttcct cattctggga gtgctggtgt
      541 ccatcatagg aatcgccatg gcagtccttg gatattggcc ccagaaggag cacttcattg
      601 acgcagagac cacgctgtcc accaatgaga cccaagtggt tcggaaccag ggcggtgtgg
      661 tggtgcgctt ctttgagcag catctacatt ccgataagat gaagatgctt ggcccgttca
      721 ccatgggcat cggcatcttc attttcatct gcgccaatgc cattcttcat gagaaccgcg
      781 acaaagaaac caaaatcatc cacatgaggg atatctactc cacagtcatc gacatccaca
      841 ctctgagact caaggagcag aagcaggcaa atggcctata cgcaggcttg ctgggagaca
      901 cagaagtgaa gcagaacggc agcccctgtg catccaggct ggctgccacc accttggcct
      961 ccttctcagg gatgcggaac agctttcggg tggacagctc tgtggaggag gatgaactga
     1021 tgttgactga aagtaagagc ctggggcacc tcatgccccc gttgctatct gacagtgcag
     1081 tctctgtctt tggcctttat ccacctccag ccaaggccac cgatgacaag gccagcagct
     1141 ccaagaagtg tgacaccaaa tcgattgtgt cgtcatccat cagtgctttc acgctacctg
     1201 tgatcaagct taataactgt gtcattgacg agcccagtat agacagcatc actgaggtcg
     1261 cagacaacct caaaactagg tccaggaatc tttccatgga ttccctcgtg gtcccactgc
     1321 cgagctctgg tgagtccttt cagcctgctg tcacgttact cccaaggaac aattccgttg
     1381 gggagtccct atctagtcaa tacaagtcct ctgtggctct gggccccggg actggacagc
     1441 tcttgtctcc gggagctgca agaagacagt ttggctccaa cacatccttg catttgctct
     1501 cttctcactc caaatcccta gacttagaca gaggtccttc cacactcacc gtgcacgcag
     1561 aacaaaggaa gcacccgagc tggccccggt tggatcggag caacagcaaa gggtatatga
     1621 gactggagaa caaagaggac ccgatggatc ggttgctcgt tccccaaaca gcaatcaaaa
     1681 aagattttac caataaagag aaacttctca tgatctcaag atctcataac aacttgagtt
     1741 ttgaacatga tgagtttttg agtaacaact tgaagcgagg aacttctgag acaaggtttt
     1801 agtgtttatt tttaccactg accattttcc ttggaggtat atactacttt agccagtgtt
     1861 tgcctcctta aagcattggt tgcaagcctt ttaaactcaa atgtcagcgt gttagaaatg
     1921 gctggttaac tctgtaatga agatggctgt atgtatgggt tccttttccc tgcagatctg
     1981 taggttatca cgtgagattt ttgttttctc actctctgaa agcatggttt cttttgttga
     2041 catagatgca aaatacctgc attcatatta agaacttggc tttactttca aatcctatta
     2101 tcaatgatca tcttcataga gggaagtagc cagtacagaa agtgcggggt accaaagtgt
     2161 ggacaagaag tgttaaactc aggtctaata ctcaatagac ataaatgaga gagagtgcag
     2221 tcttaagatg ggattttctg aattgcttta ttcaagattg cttacattac ttaatgggag
     2281 aactcatttc tgttacatct gttgtgaatc atattctgaa ctctttatgg gcagtatgta
     2341 tatatatatt acacatcagt tttgctaggg tgatatttta atggaaaaaa aaaacatggt
     2401 ggagaagtcc atggtttaga gataaatagc aaaaagcaac tagctgtaac tttagagcct
     2461 cagaatcaaa cattttctct gcaaagtgat gtgaaaagtg agtgagctac tgtagtttgt
     2521 agactttctg tcctgacatg cgcagagaga acgccaccta aggagcaaag atactattat
     2581 ttgcatctaa catctagtca cttgctgttg tccagaattc acttaccccc atccttattt
     2641 tgttccaaaa tactattatt attatcatta tcactagtta atctaagaaa taatcagcta
     2701 acctcagcat ttcttcgtat ctccacatgc caccagcttg gaggttaaaa tgaatttatc
     2761 gcttgataaa ctgccttgtg atttaccctg tgctggaaag ccttccacta actccaaaga
     2821 ctctctcctg gtgggacaag ttttgagggt tgtggttatc aaatatctta aattgtcaaa
     2881 gatactaaat actaaagtga atgtttccat tagacatctt tctcatttcc atgaaggtaa
     2941 catggtttta acagttgttt aatggggtcc tggaagagtg tctcagcagt taagagagag
     3001 cattggctgt tcttggagag aattctgatt ttgttccctg cacccacgtg gtggctcaca
     3061 gtcatctgta actccggttt caggggatct aacactctct tctggcctct gtgagcacca
     3121 ggcatgcata tggtgcactt acacacacac acaggcactt atacgcgaaa ataaaaatct
     3181 ttattttcaa aagtctaatg gaatactcag gaaattttgc tggtttttcc caaagcctaa
     3241 acatttgtga acattcctat tgcagtcact agaaggaaca gaaaggacac atttgtaaga
     3301 atagcatcct agaatcccaa cctgtgttta cacagacatc ttccttctgg agaggcaccc
     3361 tgcttcgtag aagctcaagc ctgtgtgtta taatagacta agctcaatat tttactataa
     3421 aaacatttaa taaatgtctg ttactcctag aaatgtgtgt tcttcatacc tttgctatca
     3481 tttttttaaa taaaatgtac atttctgttt taaaaaaaaa
//
