LOCUS       NM_026325                848 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus transmembrane protein 179B (Tmem179b), transcript
            variant 1, mRNA.
ACCESSION   NM_026325
VERSION     NM_026325.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 848)
  AUTHORS   Floyd,J.A., Gold,D.A., Concepcion,D., Poon,T.H., Wang,X.,
            Keithley,E., Chen,D., Ward,E.J., Chinn,S.B., Friedman,R.A.,
            Yu,H.T., Moriwaki,K., Shiroishi,T. and Hamilton,B.A.
  TITLE     A natural allele of Nxf1 suppresses retrovirus insertional
            mutations
  JOURNAL   Nat Genet 35 (3), 221-228 (2003)
   PUBMED   14517553
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC116961.1 and AC025794.9.
            
            On Sep 9, 2009 this sequence version replaced NM_026325.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC116961.1, AK007906.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164143
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-749               BC116961.1         1-749
            750-848             AC025794.9         235293-235391       c
FEATURES             Location/Qualifiers
     source          1..848
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 5.55 cM"
     gene            1..848
                     /gene="Tmem179b"
                     /gene_synonym="0610031L02Rik; 1500003K22Rik;
                     1810059G22Rik"
                     /note="transmembrane protein 179B"
                     /db_xref="GeneID:67706"
                     /db_xref="MGI:MGI:1914956"
     exon            1..133
                     /gene="Tmem179b"
                     /gene_synonym="0610031L02Rik; 1500003K22Rik;
                     1810059G22Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..697
                     /gene="Tmem179b"
                     /gene_synonym="0610031L02Rik; 1500003K22Rik;
                     1810059G22Rik"
                     /codon_start=1
                     /product="transmembrane protein 179B precursor"
                     /protein_id="NP_080601.2"
                     /db_xref="CCDS:CCDS29545.1"
                     /db_xref="GeneID:67706"
                     /db_xref="MGI:MGI:1914956"
                     /translation="MALPWLQRVELLLFTAAFLCGALAAATLTRTQGSFGGNCPLYGV
                     AALNGSSLALLGPSAPSLCYFVAGASGILALYCLLLLFFWVYSSCIEDSHRGSIGLRI
                     ALAISATAIFLILVSACILRFGTNSFCNSIISLNLTISCSEAQKTSWTPSGTAVQFYS
                     NLHTAETSSWVNLILWCLALLLQAMQCKFKATSYQPQERGDQEWSSETDALVGHHQSH
                     S"
     exon            134..321
                     /gene="Tmem179b"
                     /gene_synonym="0610031L02Rik; 1500003K22Rik;
                     1810059G22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            322..456
                     /gene="Tmem179b"
                     /gene_synonym="0610031L02Rik; 1500003K22Rik;
                     1810059G22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            457..535
                     /gene="Tmem179b"
                     /gene_synonym="0610031L02Rik; 1500003K22Rik;
                     1810059G22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            536..848
                     /gene="Tmem179b"
                     /gene_synonym="0610031L02Rik; 1500003K22Rik;
                     1810059G22Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      824..829
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem179b"
                     /gene_synonym="0610031L02Rik; 1500003K22Rik;
                     1810059G22Rik"
                     /note="hexamer: AATATA"
     polyA_site      842
                     /gene="Tmem179b"
                     /gene_synonym="0610031L02Rik; 1500003K22Rik;
                     1810059G22Rik"
                     /note="major polyA site"
ORIGIN      
        1 gggcttgggt ggttgtcttc ctggtagcct gggcgccatg gcgctgccct ggttgcagcg
       61 agttgagctc ttgctcttca ctgccgcctt cctgtgcggg gctttggcgg ccgcgacgct
      121 gacccggacc cagggctcct ttggtggtaa ctgtcccttg tatggtgtgg ctgcactcaa
      181 tggctcctct ctggccttgt taggtccctc agccccttcc ctctgctact tcgtggctgg
      241 ggcttcaggc atcttggcac tctactgcct tctgcttctc ttcttctggg tctacagcag
      301 ctgcatcgaa gactcccaca gaggttctat agggctccga attgctttgg ccatctcagc
      361 tacagccatc ttcctgatct tagtgtctgc ctgtatactt cgatttggca ccaattcttt
      421 ctgcaattcc atcatctcct tgaaccttac aattagctgc tctgaagccc agaaaacctc
      481 atggacacct tcaggaactg ctgtgcagtt ttactccaac ctacatactg ctgaaacctc
      541 ttcttgggtg aatctgatat tgtggtgtct ggctttgctg ctccaggcca tgcagtgcaa
      601 gtttaaagcc acatcatacc agccccaaga gaggggtgac caagagtgga gctctgagac
      661 agatgctctt gttgggcacc accagtctca ctcctgaaga atactcaagt gctttctaca
      721 accagaacct ccatgcccca gtgcttttaa tcctcttgtc tctgtacagc cctgtttata
      781 ttagaaacct cagttttctc cttaaacttt tttgtaccaa aataatatat tacttttctt
      841 catcatgg
//
