LOCUS       NM_001416072            1598 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus transmembrane protein 106C (Tmem106c), transcript
            variant 10, mRNA.
ACCESSION   NM_001416072
VERSION     NM_001416072.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC158787.14.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422590.468828.1,
                                           SRR13422586.220145.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-275               AC158787.14        197028-197302
            276-466             AC158787.14        197639-197829
            467-530             AC158787.14        199046-199109
            531-690             AC158787.14        199736-199895
            691-831             AC158787.14        199986-200126
            832-855             AC158787.14        200876-200899
            856-909             AC158787.14        201408-201461
            910-1598            AC158787.14        202386-203074
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 53.96 cM"
     gene            1..1598
                     /gene="Tmem106c"
                     /gene_synonym="D15Ertd405e"
                     /note="transmembrane protein 106C"
                     /db_xref="GeneID:380967"
                     /db_xref="MGI:MGI:1196384"
     exon            1..275
                     /gene="Tmem106c"
                     /gene_synonym="D15Ertd405e"
                     /inference="alignment:Splign:2.1.0"
     exon            276..466
                     /gene="Tmem106c"
                     /gene_synonym="D15Ertd405e"
                     /inference="alignment:Splign:2.1.0"
     CDS             286..1098
                     /gene="Tmem106c"
                     /gene_synonym="D15Ertd405e"
                     /note="isoform 2 is encoded by transcript variant 10"
                     /codon_start=1
                     /product="transmembrane protein 106C isoform 2"
                     /protein_id="NP_001403001.1"
                     /db_xref="GeneID:380967"
                     /db_xref="MGI:MGI:1196384"
                     /translation="MGSQHSSALTFCQRKKDDNPEDLLADRDQEEAIAQFPYVEFTGR
                     NSITCHTCQGAGYIPAEQVNELVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVFF
                     FLFPHSVLVDDNGIKVTKVTFNEQDSLVVLDVTATLKIRNSNFYPVAVTNLFSQVQYM
                     KAVVGSYTTTNVSLIAPRSEHLVNFTVKAELLLHTPCHPGTQHCDLHEDFCEDFIHWP
                     HIPEHLGDTALCGLWGEFHSCSEPVLGSSGATPVEGSLTSVPMAGPFTTWYK"
     exon            467..530
                     /gene="Tmem106c"
                     /gene_synonym="D15Ertd405e"
                     /inference="alignment:Splign:2.1.0"
     exon            531..690
                     /gene="Tmem106c"
                     /gene_synonym="D15Ertd405e"
                     /inference="alignment:Splign:2.1.0"
     exon            691..831
                     /gene="Tmem106c"
                     /gene_synonym="D15Ertd405e"
                     /inference="alignment:Splign:2.1.0"
     exon            832..855
                     /gene="Tmem106c"
                     /gene_synonym="D15Ertd405e"
                     /inference="alignment:Splign:2.1.0"
     exon            856..909
                     /gene="Tmem106c"
                     /gene_synonym="D15Ertd405e"
                     /inference="alignment:Splign:2.1.0"
     exon            910..1598
                     /gene="Tmem106c"
                     /gene_synonym="D15Ertd405e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1577..1582
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem106c"
                     /gene_synonym="D15Ertd405e"
                     /note="hexamer: AATAAA"
     polyA_site      1598
                     /gene="Tmem106c"
                     /gene_synonym="D15Ertd405e"
                     /note="major polyA site"
ORIGIN      
        1 ggttctgcgc gtgcgcacgg gcggaggcgc gccgaggact cgctggagcg ggcaggtgga
       61 gggaggagtg gtcccgggag taactgccag cagttggtgc gccacaggtc cgggggcgcc
      121 cgcgttcccg agcctcggag gcctgaacgc gttcggaacg tggctttttt tgtgcggggg
      181 cgtgacctga gcccgcctcc tcggctggga gtggaggaga atggggatcg ctgaggcctt
      241 taattaatct ggtgcctgtt gtttgtgtgc ccgaggagat gacacatggg gtctcagcac
      301 tcctctgccc tcacattttg tcagcgaaag aaggatgaca acccggagga cttgctggct
      361 gatagagatc aggaggaagc catcgctcag ttcccctatg tggagttcac tgggagaaat
      421 agcatcacct gtcacacctg ccaaggagca ggctacatcc cagcagagca agtcaatgag
      481 ttggtggctt tgatccccca cagtgaccag aggctgcgtc ctcagagaac aaaacagtat
      541 gtcctcctgt cggtcctgct gtgtctcctg gcatctggcc tggtgttctt ctttctgttt
      601 ccacactcgg tcctcgtgga cgataacggc atcaaagtga caaaagtcac gtttaatgaa
      661 caggactccc ttgtggtcct tgatgtcacg gccaccctga agatcaggaa ctccaacttc
      721 tatcctgtgg cggtcaccaa cctgttcagc caggtccagt acatgaaggc tgtggtcggc
      781 tcgtacacaa ccacgaatgt ctcactcatt gcccctagga gtgagcacct ggtgaatttt
      841 accgtgaagg ctgagcttct actgcacact ccctgccatc cgggtacaca acattgtgat
      901 cttcatgagg acttctgtga agatttcata cattggccac atatcccaga gcaccttgga
      961 gacacagcac tatgtggatt gtggggtgaa ttccacagct gctcagagcc tgttcttggt
     1021 tcctcggggg ccacacctgt agaaggaagc ctaacatctg tccctatggc tggcccattt
     1081 accacatggt ataagtagag gaggaagaag aaacccgcag aaagcatcct cccacactta
     1141 ggggaaagcc gccccttcca acgaaaccac tgtccagtgc ctagtctgtg cctagcaaat
     1201 agttagcact caactacagg ttgaagaatt ggattcagat attctggctg ctcttgagtc
     1261 attataagtt gagatgaacc agggttccag gttttcagac cagagtaaca tgaaggtagg
     1321 ttgctagtgc agctgcagac gtatgggtgt ggtgtccagg acacccaccc gtgaggagcc
     1381 ctcagcggct gcctctgcat ctgttcccta atacctcccc ctcccgcctc accccacccc
     1441 cgctttttgg aaagtttttg gcgtttcttt tccttcccca tacaaagtga ttacagtttc
     1501 ccccgcaagg gtctatcgaa gggcttgacg gacctttgat ccactggctg gatatagatt
     1561 gggaatttga tagaaaaata aaccctgctt ttgattga
//
