LOCUS       NM_001033393            4583 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus transmembrane protein 104 (Tmem104), mRNA.
ACCESSION   NM_001033393 XM_112560 XM_903125 XM_903126 XM_903127 XM_915152
            XM_923600 XM_923603 XM_923607
VERSION     NM_001033393.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4583)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4583)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   3  (bases 1 to 4583)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Kitamura,H., Nakagawa,T., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of FLJ
            genes: the complete nucleotide sequences of 110 mouse
            FLJ-homologous cDnas identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (2), 127-135 (2004)
   PUBMED   15449545
REFERENCE   4  (bases 1 to 4583)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY091433.1, AK171457.1, AL603828.9 and BE948925.1.
            
            On Dec 17, 2009 this sequence version replaced NM_001033393.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK155041.1, AK171457.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-112               BY091433.1         2-113
            113-910             AK171457.1         75-872
            911-4179            AL603828.9         44286-47554
            4180-4583           BE948925.1         1-404               c
FEATURES             Location/Qualifiers
     source          1..4583
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 80.69 cM"
     gene            1..4583
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /note="transmembrane protein 104"
                     /db_xref="GeneID:320534"
                     /db_xref="MGI:MGI:2444222"
     exon            1..112
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /inference="alignment:Splign:2.1.0"
     exon            113..225
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /inference="alignment:Splign:2.1.0"
     CDS             181..1671
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /codon_start=1
                     /product="transmembrane protein 104"
                     /protein_id="NP_001028565.1"
                     /db_xref="CCDS:CCDS25623.1"
                     /db_xref="GeneID:320534"
                     /db_xref="MGI:MGI:2444222"
                     /translation="MAGEITETGELYSPYVGLVYMFNLIVGTGALTMPKAFATAGWLV
                     SLVLLVFVGFMSFVTTTFAMEAMAAANAQLRWKRMETHKEEDDEDSSTASDSDLLSQD
                     NYERAEKRPILSVQRRSSANLFEITDRVEMGQMASMFFNKVGVNLFYFCIITYLYGDL
                     AIYAAAVPVSLMQVTCSVSGNDSCGVDTDARYNDTDLCWGPLRRVDVYRIYLAIFTVL
                     LGPFTFFDVQKTKYLQILTSMMRWIAFAIMIVLALVRIGKGQGEGHPPLANFLGVQNL
                     FGVCVYSFMCQHSLPSLITPISSKRHITRLLFLDYALILAFYGLLSFTAIFCFRGDSL
                     MDMYTLNFARCDVVGLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYP
                     WVVDRVVFPTITLVPPILVAFCTHDLESLVAITGAYAGTGIQYVIPAFLVYLCRKDTQ
                     LTFGYGTVNKHRSPFRHTFWVAFVLLWAFSCFFFVTAYIVLKETQL"
     exon            226..347
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /inference="alignment:Splign:2.1.0"
     exon            348..429
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /inference="alignment:Splign:2.1.0"
     exon            430..526
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /inference="alignment:Splign:2.1.0"
     exon            527..607
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /inference="alignment:Splign:2.1.0"
     exon            608..707
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /inference="alignment:Splign:2.1.0"
     exon            708..816
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /inference="alignment:Splign:2.1.0"
     exon            817..910
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /inference="alignment:Splign:2.1.0"
     exon            911..4566
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3288..3293
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /note="hexamer: ATTAAA"
     polyA_site      3307
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
     regulatory      4546..4551
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /note="hexamer: AATAAA"
     polyA_site      4565
                     /gene="Tmem104"
                     /gene_synonym="C630005D06Rik; mFLJ00021"
                     /note="major polyA site"
ORIGIN      
        1 gggaagcgtg cgcgtgcgcg tagcgggcgc tggtgcgggg ccgctggtgc cgggtggcag
       61 ctgcagagct ggaggcggtg gccactgtgc ctggaagcta gctgtgctgc aggagctgcg
      121 gctgctgctg ccactgcata gaagtaacct cttgggccag cccttcctca ctctctggag
      181 atggcaggcg agatcacaga gaccggagag ctctattctc cttatgtcgg gctggtgtac
      241 atgtttaacc tcatcgtggg cacaggtgcg ctcaccatgc ccaaggcctt tgccaccgcc
      301 gggtggctcg tcagcctcgt tctgctggta ttcgtaggct tcatgagctt tgtgacaacc
      361 acctttgcga tggaagccat ggctgcagcc aatgcccagc tccgctggaa gaggatggag
      421 acccacaagg aagaggatga cgaagactcg tccacagcct cagacagtga cctcctcagc
      481 caagacaact acgagagggc agagaaacgc cccatcctgt ctgtgcagag acgctcatct
      541 gccaaccttt ttgaaatcac agaccgggtg gaaatgggac agatggcttc catgttcttc
      601 aataaagtgg gggtcaactt gttctatttc tgcatcatta cttacctgta tggagacctc
      661 gccatctacg cggccgcggt gcccgtgtcc ctcatgcagg tgacctgcag cgtctctgga
      721 aatgactctt gcggcgtgga tacagacgcc agatacaacg acactgatct gtgctggggc
      781 cccctgcgcc gggtggatgt ctaccgaatc tatctggcca tcttcaccgt ccttcttggc
      841 ccgttcacct tctttgatgt ccagaagact aagtacctgc agatcttgac ctctatgatg
      901 agatggatcg cctttgccat catgattgtg ctggccctgg tgcgcatcgg gaaaggacaa
      961 ggagaggggc acccgcccct agccaacttc ttgggggtcc agaacctgtt tggggtgtgt
     1021 gtctactcgt tcatgtgcca acactccctg ccgtccctca tcactcccat ctcctccaag
     1081 cgccacatca cgcggctgct gttcctggac tacgcactga tcctggcctt ctacggcctc
     1141 ctctccttca cggctatctt ctgcttccgt ggggacagcc tcatggacat gtacaccctc
     1201 aacttcgcga ggtgtgacgt cgtgggcctt gctgcagtcc ggttctttct gggcctcttc
     1261 cctgtgttca ccatcagcac caacttcccc atcatcgcgg tgaccctgcg caacaactgg
     1321 aagacgctct tccaccgtga aggtggcacc tacccatggg tggtagaccg agtggtgttc
     1381 cccacgatca ccctggtgcc tcccattctg gtggccttct gcacccatga cctggagtcc
     1441 ctggtggcca ttacaggagc ctatgcgggc accggcatcc agtacgtcat ccctgccttc
     1501 ctggtgtacc tctgccgcaa ggacacccag ctgacctttg gctatggaac tgtcaacaag
     1561 cataggtccc cgttccgcca caccttctgg gtggcctttg tgctgctgtg ggctttctcc
     1621 tgcttcttct ttgtcacggc ctacatcgtc ctcaaggaga cccagctctg atagcagatg
     1681 tgtctgacaa caggaggcag aaacagccca gctccagcct ccctgcatca aagcaggatt
     1741 tagctgccac ccgggtctac gtgagcatgc taggctgggg ctctcggaga aggccttcta
     1801 cgtctccagc tgctgacttc tccccaccca ggacgtcacc atgcaggaca gctctcctgc
     1861 acgggaacat ggctgtcaca cacattcctc cactcctgcc actggaggct ggctccctcc
     1921 tccgcagtgg aggagacagt gctgaccctg ctgctattta tattagaccc cgtgccccct
     1981 accgcatcct caaccatcca ctagcagtgg ctgcctcctc aaaggtgaat tccagtccct
     2041 ggctctccta acctgacctg cttggaaggg caaggccctc ttccctgcca atcctgacag
     2101 ttgctaagtt gtttttaccc cctatgggtg gcccagccag ctctagtgac aaggacagga
     2161 agtgctaatt ggcaccaggg tctctaggca agagcctgcg agagtgtctg gctctggcaa
     2221 cagcagacag atgaagcatc cttccccagg gtttagagcc ctttgcttgg gtccctgaga
     2281 ggagtcctat gtcccctggc ttctcctttg gagcccaggg accccctgaa ttgcggggta
     2341 ccacttgaaa agctgccctc atcaccccca cacacacaca cactcacaca cccattgtag
     2401 ctgaccaccc tggacttaca acagggagag cacagagtga ctctctgcaa aaggtcaggc
     2461 tggtgtcagg cagcccagct tgcagccagg ctgcattgca acactaaggt ggtgcccttt
     2521 ggagcctggt catgggtgct cagtggccac cctctccagg tccctggcta ccgtggagct
     2581 ggagggggtg cataccacca ttcctgtgga aggaggccgg gctcccagct gcctcctgtt
     2641 gggtcacgcc tgcgcgcact aggcccgatg ccttggaatg atgagtgagt gatgaactgc
     2701 attttcgatg tgccttctgc tttgagcacc agtgatccct cctgaccctg acttgcccca
     2761 gccctgggcc tagtcccgcc tctcctggac agaactgcct ctggggtgga gggtcctaga
     2821 cccctgcccc ctccctcttg atttcagtgc cttgctccac cctcgtgagg gaacttgcgc
     2881 cagccacctc ttccctttct acatcttgcc cgccatattt aaagctcgaa ctctgctgtg
     2941 ttgttggatg tcccaggacc caggaggctg tgcagaacct gccaagaatg tgggacccac
     3001 tggcagcacc tgccacctct ggtcccagca tccctgcccc tacgcatctc cagatggagg
     3061 tgggccaggc tgcagcttct tacagctgtc ccacatcaat agttccagcc acacggaaga
     3121 cagacgtccc tatgctggtc tgccagtgca gcatcttccc aggaagccct gtcccacagt
     3181 gcgccaagta aggaaagcaa tacagtagca ggcgcaggag taagggacag ctgcccatca
     3241 tccctgcccc gccccgcccc cgtctcaggc tgtttgctga gaactcaatt aaaacatctg
     3301 tacttaacct tctccctctt gcttaaggac aaagcaaatt aaatcttccc actgcaacac
     3361 acacacctca ccccaccccc aggctccaaa ctgaattttg gtggaaaatt tattagcatc
     3421 ataaagccca agttgattta tgtgacaatc tggagccaca cacagcggct gctgcgctcc
     3481 ccacccccaa gttaagttag ggaagcccca gcctgggcag gaggagggac gggctggcca
     3541 catcactgat gccaagccaa cctccccact gtctggtttc tgtgctcctt catctccacc
     3601 tattgtctga cctgctagaa gccacatgag gtcttatcac accaggcctc tgtcactggt
     3661 agccaggagt gttgggcaca gagaggagag gactgggggt gggggtagca tttgtgggta
     3721 tcatttgttg tcaccccctc ccacacacac acaggcatcg agcacactaa atatttgtat
     3781 atcacctggg taaggtgata cgttaggtca tggcatctgc atagaggccc tggggttcgt
     3841 ggtccagagg acagcaagga gcccacccag cctggcccca gatccgagtc tctgaaactc
     3901 agccattgtc actgccatct ttctgccttg ccccggaccc gtcccgaggg cagggcaggt
     3961 caaggtggga acgatcattc tctagagctc cagacccagc tgagcatcca cacggtgcca
     4021 ggagctctgg ctgtgcctca cctgaggctg gtagatgggg cagatggcag gtgtcaggct
     4081 gtgaggcact gcggagcggt aaaaagtggc attgggcacc aggccaggcc caaagccaca
     4141 cagctgtcct caccacatgg ggccaagagc ctcagcaaca ggcagtggct gtctcttggg
     4201 gctccagctg aagagaagta gctggtggtt ccagacccag gggcagagga aggctgccgg
     4261 tctaaggagt aaagtgccaa gcaagtgaag tgcaggggct gctgaaagct gactgtgaca
     4321 gccaggtggc ggcaagccct gtcaaccttc ctcctggggg gcggggggtg ggggagtgga
     4381 tggatatgct gtgtgcctgg tacattgtga ggaccaaact gtcataaccc ccataccccg
     4441 tggcctctaa gcagcaagca tctataaccc tccctcttgt ggggacctcc agatcgtagg
     4501 tcgtggaaac taaaggactg agcttatccc agcaccaaag tccttaataa agctgctatt
     4561 acccacaaaa aaaaaaaaaa aaa
//
