LOCUS       NM_133352               6144 bp    mRNA    linear   ROD 18-JUN-2024
DEFINITION  Mus musculus transmembrane 9 superfamily member 3 (Tm9sf3), mRNA.
ACCESSION   NM_133352 XM_917631 XM_925063
VERSION     NM_133352.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6144)
  AUTHORS   Zhao,R., Liao,W., Tan,D., Huang,H., Hu,C. and Chen,M.
  TITLE     Comparative analysis of the expression patterns of TM9SF family
            members in mice
  JOURNAL   Gene Expr Patterns 52, 119366 (2024)
   PUBMED   38719197
REFERENCE   2  (bases 1 to 6144)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 6144)
  AUTHORS   Bailey,P.J., Klos,J.M., Andersson,E., Karlen,M., Kallstrom,M.,
            Ponjavic,J., Muhr,J., Lenhard,B., Sandelin,A. and Ericson,J.
  TITLE     A global genomic transcriptional code associated with CNS-expressed
            genes
  JOURNAL   Exp Cell Res 312 (16), 3108-3119 (2006)
   PUBMED   16919269
REFERENCE   4  (bases 1 to 6144)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   5  (bases 1 to 6144)
  AUTHORS   Mu,X., Zhao,S., Pershad,R., Hsieh,T.F., Scarpa,A., Wang,S.W.,
            White,R.A., Beremand,P.D., Thomas,T.L., Gan,L. and Klein,W.H.
  TITLE     Gene expression in the developing mouse retina by EST sequencing
            and microarray analysis
  JOURNAL   Nucleic Acids Res 29 (24), 4983-4993 (2001)
   PUBMED   11812828
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CA529050.1, AF269151.1 and AC133099.3.
            
            On Jan 6, 2006 this sequence version replaced NM_133352.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660817.287291.1,
                                           SRR1660815.141214.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164137, SAMN01164143
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-358               CA529050.1         1-358
            359-2477            AF269151.1         291-2409
            2478-6144           AC133099.3         59938-63604         c
FEATURES             Location/Qualifiers
     source          1..6144
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 34.54 cM"
     gene            1..6144
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /note="transmembrane 9 superfamily member 3"
                     /db_xref="GeneID:107358"
                     /db_xref="MGI:MGI:1914262"
     exon            1..246
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     exon            247..442
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     exon            443..565
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     exon            566..726
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     exon            727..804
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     exon            805..936
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     exon            937..1103
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..1198
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1199..1329
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1330..1469
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1470..1538
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1539..1685
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1686..1769
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1770..1846
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1847..6144
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2487..2492
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /note="hexamer: ATTAAA"
     polyA_site      2514
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /note="major polyA site"
     regulatory      3175..3180
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /note="hexamer: AATAAA"
     polyA_site      3190
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /note="major polyA site"
     polyA_site      3194
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /note="major polyA site"
     regulatory      3281..3286
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /note="hexamer: TATAAA"
     polyA_site      3300
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
     regulatory      6118..6123
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
                     /note="hexamer: AATAAA"
     polyA_site      6144
                     /gene="Tm9sf3"
                     /gene_synonym="1810073M23Rik; 2810031D16Rik; mKIAA4036;
                     Smbp"
ORIGIN      
        1 cgggggcggc gcggagcggg cggtgacggc ggcggaggca gcggctgtgc ccgggccccg
       61 tgcgtctgtc cgcgcccggt ggatgtgaat cggcggcggc ggcggaggag gagtcggtgg
      121 gccggcgccc ggcctgtggg agcgcggagg atgaggccgc tgccgggcgc tcctggcgtg
      181 gcggcggccg ccgcgttgtt gttgctgctg ctgccccggg ctcggtctga cgagcacgaa
      241 cacacgtatc aagataaaga agaagttgtt ttatggatga atactgttgg gccctaccac
      301 aatcgccaag aaacatataa atacttttca cttccattct gtgtggggtc aaaaaaaagt
      361 atcagtcatt accatgaaac tttgggagaa gcacttcaag gagttgaatt agaatttagt
      421 ggcctggaca ttaaatttaa agatgatgtg atgccaggca cttactgtga aattgactta
      481 gataaagaga agagagatgc gtttgtgtat gctatcaaga atcactattg gtatcagatg
      541 tacatagatg acttaccaat atggggtatt gttggtgaag cagatgaaaa tggggaagat
      601 tactatcttt ggacctacaa aaaacttgaa ataggcttta atggaaatcg aattgttgat
      661 gttaatctaa ctagtgaagg aaaggtcaag ctggttccaa atactaaaat acagatgtca
      721 tattcggtaa aatggaaaaa atcggatgta aaatttgaag atcgattcga taaatatctt
      781 gatccatcct tttttcagca taggattcac tggttttcaa tttttaattc cttcatgatg
      841 gtgatcttct tagtgggatt agtttcaatg attttaatga gaactttaag gaaagattat
      901 gcccgataca gtaaagaaga agaaatggat gacatggaca gagacctagg agacgagtat
      961 ggctggaagc aggtgcatgg agatgtgttc agaccgtcaa gtcaccctct gatcttctcc
     1021 tccctcattg gctctggatg tcagatattt gctgtgtctc tcattgttat tattgttgcc
     1081 atgatagagg acttatatac agagaggggg tcaatgctca gcacagccat atttgtctat
     1141 gctgctacat cgccagtgaa cgggtacttt ggaggaagtc tgtatgctag acaaggagga
     1201 aggagatgga taaagcagat gtttatcggg gcattcctta tcccagctat ggtgtgtggc
     1261 actgcattct tcatcaactt tatagccatt tattaccatg cctctagagc cattcctttt
     1321 ggaacaatgg tggccgtttg ttgcatctgt ttctttgtta tccttcctct aaatctcgtt
     1381 ggtacaatac tgggtcgaaa tctgtcgggt cagcccaact tcccttgtcg tgtcaatgcc
     1441 gtgcctcgtc ccatcccgga gaaaaaatgg tttatggagc ctgcagttat tgtttgcctg
     1501 ggaggaattt taccttttgg atcaatcttt attgaaatgt acttcatctt cacgtccttc
     1561 tgggcatata agatctacta tgtctatggc ttcatgatgc tggtgctggt catcctgtgc
     1621 attgtgactg tctgtgtgac cattgtctgc acatacttcc tgctaaacgc agaggattac
     1681 aggtggcagt ggacgagttt cctgtctgcg gcgtcgaccg cgatctacgt ttacatgtac
     1741 tccttttact actacttctt caaaaccaag atgtatggct tatttcaaac atcattttac
     1801 tttggctaca tggcggtgtt tagcacagcc ttggggataa tgtgtggagc aatcggttac
     1861 atgggaacaa gtgcctttgt tcgaaaaatc tatactaatg tgaaaattga ctagatatct
     1921 gagacaacat ggaacttcgg atcagtttct ctttcatgag ggtggaactt gcacagaaaa
     1981 gaagaataat cgcaagaaga gatttgggct taacactggg tactttgtgg gtctcttttg
     2041 tggatggctt caagtaacat ctatttccat tgatcctagg ttcttactga ctgctttctc
     2101 cagctgttca cagcagatgc ttggatttta tgcagtaggc tttactacag tacatggcta
     2161 atcttcccca aactagctca ttaaagatga aatagaccag ctctcttcag tgaagaggac
     2221 aaatagttta tttaaagcat ttgttccaat aaaataacta gagggaaact tggatgctaa
     2281 aattccataa gtagaaaaat cttcctggca cttggtgttt ctatgttatt gaaaaatgat
     2341 gttccagaaa gattactttt tcttttattt ttactgccat tgttgatgtg ttgtgggaca
     2401 tttttatata ttgaacctgg gttctttttt gatctgtttt ggtcgtccct ccattcaact
     2461 gcatcttttt tttttttaaa aacaaaatta aaagctattc aattctgcat ggaatatatc
     2521 tgctgtcatc ttaatcttag tttggatcaa cctcatttat ttatcttaaa attaaccagc
     2581 tttctcagtt ccatccaaag aagatacagt atgaaagtag aggtgcactc tctataatac
     2641 aatctactgt acagttagca agcgaagtgt taaatggaga agatgcttgt ttttattaaa
     2701 catttggaga tttagataat ttacatttta actgaatgtc taaagtgatt atcttcccct
     2761 ccctccccca agttaatctt ccatctttgt ttttgggttt caatgaaggc tttacataag
     2821 aaattattaa acaaaacaag gggggcaata aatgtatata acattaataa tgtcgcgtag
     2881 gtgtaggttc ctggatgcat ttggatgtac agactgactg ggggactgta ttgcgatgat
     2941 gattggtgta gaaacgtatg ggtctgggtg gccttttaca tcttgcctac cattgcatga
     3001 aacattgggg tttcttcaaa atgtgtgtgt catacttctt ttgggagggg gttgttttct
     3061 tcttttatga aactcctact ggagctcaat ttgtaattta gaaacattta attttgttaa
     3121 tcctgtctgg gacatttagg taacatctaa agcattattg ctttagaatg ttcaaataaa
     3181 atttcctgac caaattgttt tgtgacagta gatgtgttta taatttgaag atacctgctc
     3241 agaaggccat attatagaat gtcattttta aaaaataaaa tataaagcat actttcgaaa
     3301 tacaaaggac actcattaca acccccaaac tcagatccag gtatgatagt ttatgcctat
     3361 aatcccagca ccagggaagc taaggtggaa ggttgtttga gtttggaact gggctagaga
     3421 gtgagttatt gctcactctg agttctgcgc tactctgggg gactctgttt caaggggaaa
     3481 aaaagaacag agtctgactg cttggctacg tacagtataa gtatttcctt tctgtgacat
     3541 tgtgacatac aatttaaaca ctcattgggc tgctgtgctg tgtaaagaaa gagggactgc
     3601 agtgtagctc ctttagtggt gagacatgaa ggctgtggca atctcaagaa atcattttaa
     3661 tttgtacata tattttcagg ttctgcccac actgtgaggt ttttctagaa tcactgagtt
     3721 tctgatttag tagtttgttc tgtagatccc caaagctgtg ctgtgtattg gtggttttag
     3781 aaagactcag ctcatgagct gtgttaaacc ttaacatgag actcatatat tcagggttac
     3841 atgagttact tttataaatc gatgaccccc cacccccacc ctcacgtctt actctgaggt
     3901 gtgtgacatc tttagtgtgt gagatttgga ttcctaacct taagtgagct gtaaacaatg
     3961 tgaatggagc tctggccagt cacctttaac ccagcagctt gggttcagtg tcacctacgg
     4021 attatttctc tttctcgcct gcccttagga tcttaagcta aagggcactg tttatttcat
     4081 gaaaccttta aacatgtcaa aatgtttagt ataagaacac ttagtctaca tgctggggtg
     4141 cctagcttac acagagcctg ggttcagtcc ttcacactgt ataaactggg cgagacagag
     4201 catgtttgca gtcctagcat tcagcaggta gagacaggaa gatgagaagt gcaaagtagt
     4261 ctcggctagg tagtgtcagg actatcctgt gctctatgac attctatctc taaaaatgaa
     4321 gcaacacttt ttctgtttaa tgagtattat gagttggaca gcaaattttt gtcttaataa
     4381 aatgtttttc gtaatcatgc aggtcaagtg tagggttgtc agagaacatg gcgctcttgg
     4441 gtgcacctgt ttgttctgct aggtttaggt tgagctctgg agttgtttga agtctgcgat
     4501 gaaaaataat ttttaaaagt attaagaaca ctaaaatgga ttagaattat cttaaaagat
     4561 cctttataaa atgacttgta ttgattggtt tataacttca cacaggggtg acataaatgt
     4621 atatcttgaa aaagatatag gtcacaggtg gcttaactct ccctagttct cagtagaata
     4681 gttcaaacaa tattacttat gttaattaga aggggctttt gtactccatt aatgctgtat
     4741 ttagtttact aatagctgct cagtttgtca gctgatagtc tgaatactat caaaaactaa
     4801 gaacatagtt gaagcatgct tcctgaaaat taactacatt agaaactgac atccttatac
     4861 tggtctccca agtacaaaag taggaagaag ccgttaggag ctggctagag agactctcga
     4921 gtgtgctggt gtgctgtgta ggctcccggg ccacagtggc tgtggagaag cccaggccct
     4981 tagaagaatc actgtatttg ccacctgtac ctcacggctg ctatgcttgc gtgtttccac
     5041 tgacgatggg gcctctttct aaaggcagtt gctgcaaatt ccagttcttc caaaagtcac
     5101 ttgatttaag ggttatccac aagttgtgct tattttgata tagcatttgt ttcctaaatg
     5161 tttactaatc actttatgcc aaatgtcttg cagatgttat ttttaaactt aactgaattt
     5221 ttacaaatat aaaaaggaaa aagtatatta gtgtaatttg tttaggaata gctacatacc
     5281 gaagggcttc tatacatgaa ttctaggggc aaaagccttt tgtagaaacc tgcacactgc
     5341 attccatctg ggttttaagt tcagatgtga acatttttta gtgcttcttt ttcttttact
     5401 taatgaacat gtgatatgag tagtgatgtg caaaagcaca gacgttcatg ttttctatca
     5461 tgtaaaatcc tgtagttaag ctgtatatta gcagtgaagg tgttagagag atgagatgat
     5521 ggtttgaaag tgtgttgaag actagactag atttgcagaa agagtaggac agaagagcgg
     5581 cgcacacctg cagatgttct gcaagccttg cggtccagat gagcatgccg gaaggtttcc
     5641 tcatgtagcg ttcccactgg agctgtgtgc gcggtgtgca aaggcgaaaa gatatgtcat
     5701 agttgccata aaagaggctg attgtgaaat tctggtggac taggcaaggt acagtttatg
     5761 gttatcccca tcatcagctt aggtcacttg aacatgtgta agtggtataa gtaggagcta
     5821 aatgccagga ggaaaaaggt tctcgaagaa cagcagagtt ttcctgtaaa accagtctca
     5881 tttgggcttc tcatctgtgc tcaccttgaa cctacaaacc tccatggaca gtcagcaggt
     5941 gggaagacat ggtgtttgcc catatcactt ccattttgta tacactctgg atttgtgtag
     6001 gctgtattcc agttggcttt ttagtaatag aaatccctca tatgatgtat cagatacaat
     6061 tgaggttcta atctagtctg ttaatttatc tgaaattgga ttttttttta aaaaagtaat
     6121 aaaaaattaa atacttccct tgga
//
