LOCUS       NM_080556               3062 bp    mRNA    linear   ROD 18-JUN-2024
DEFINITION  Mus musculus transmembrane 9 superfamily member 2 (Tm9sf2), mRNA.
ACCESSION   NM_080556
VERSION     NM_080556.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3062)
  AUTHORS   Zhao,R., Liao,W., Tan,D., Huang,H., Hu,C. and Chen,M.
  TITLE     Comparative analysis of the expression patterns of TM9SF family
            members in mice
  JOURNAL   Gene Expr Patterns 52, 119366 (2024)
   PUBMED   38719197
REFERENCE   2  (bases 1 to 3062)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 3062)
  AUTHORS   Sansom,S.N., Griffiths,D.S., Faedo,A., Kleinjan,D.J., Ruan,Y.,
            Smith,J., van Heyningen,V., Rubenstein,J.L. and Livesey,F.J.
  TITLE     The level of the transcription factor Pax6 is essential for
            controlling the balance between neural stem cell self-renewal and
            neurogenesis
  JOURNAL   PLoS Genet 5 (6), e1000511 (2009)
   PUBMED   19521500
REFERENCE   4  (bases 1 to 3062)
  AUTHORS   Orelio,C. and Dzierzak,E.
  TITLE     Identification of 2 novel genes developmentally regulated in the
            mouse aorta-gonad-mesonephros region
  JOURNAL   Blood 101 (6), 2246-2249 (2003)
   PUBMED   12433684
REFERENCE   5  (bases 1 to 3062)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB619330.1, AK048012.1 and AV028818.2.
            
            On May 18, 2008 this sequence version replaced NM_080556.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK075720.1, SRR1660811.127491.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-82                BB619330.1         2-83
            83-2771             AK048012.1         2-2690
            2772-3062           AV028818.2         359-649
FEATURES             Location/Qualifiers
     source          1..3062
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 65.86 cM"
     gene            1..3062
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /note="transmembrane 9 superfamily member 2"
                     /db_xref="GeneID:68059"
                     /db_xref="MGI:MGI:1915309"
     exon            1..354
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     CDS             187..2175
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /codon_start=1
                     /product="transmembrane 9 superfamily member 2 precursor"
                     /protein_id="NP_542123.3"
                     /db_xref="CCDS:CCDS27345.1"
                     /db_xref="GeneID:68059"
                     /db_xref="MGI:MGI:1915309"
                     /translation="MSSRPPASPPAQGSRLLLLSLLLLGTVPGPRPGSAFYLPGLAPV
                     NFCAEEKSNECKADIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSENLGQVLFGE
                     RIEPSPYKFTFNKKETCKLVCTKTYNTEKAEDKQKLDFLKKSMLLNYQHHWIVDNMPV
                     TWCYEVEDSQKFCNPGFPIGCYITDKGHAKDACVISSEFHERDTFYIFNHVDIKIYYH
                     VVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPAMDISNKASGEIKIAYTYSISFEE
                     EKNIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQ
                     MDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSP
                     ANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFI
                     MNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPR
                     QIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVI
                     TCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTIL
                     YFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD"
     exon            355..422
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            423..516
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            517..644
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            645..774
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            775..899
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            900..1011
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            1012..1091
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            1092..1200
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1333
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            1334..1453
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            1454..1511
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            1512..1671
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            1672..1823
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            1824..1935
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            1936..2107
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     exon            2108..3062
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2772..2777
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /note="hexamer: AATAAA"
     polyA_site      2792
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /note="major polyA site"
     regulatory      3039..3044
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
                     /note="hexamer: ATTAAA"
     polyA_site      3057
                     /gene="Tm9sf2"
                     /gene_synonym="1500001N15Rik; D14Ertd64e; P76"
ORIGIN      
        1 atgctccgtg gaggcccgct tcggtttctg tcgcggggcc cgcggtgtct cctagcgtaa
       61 ccggaactag ccgttgcggg ccggccttct ctgcgctcgg gccttgaggt gatctccgag
      121 cgccccggac ccctccttcc tcgccgtccc cctcggctcg gccgctcgcc tctcacagcc
      181 gccggcatga gctccaggcc gccagcgtcg ccgccagcgc aaggctccag gttgctgctg
      241 ctgtcgctgc tcctgctagg gacggtccca ggcccgcgcc cgggaagcgc cttctacctg
      301 cccggcctgg cgccggtcaa cttctgcgcc gaagagaaga gcaacgagtg caaggctgat
      361 atagaattgt ttgttaaccg gcttgattcg gtggaatctg ttcttcctta tgaatataca
      421 gcgtttgact tttgccaagc gtcagaagga aaacgcccat ctgaaaatct tggtcaggta
      481 ttattcgggg aaagaattga accctcaccg tataagttta cgtttaataa gaaggaaacc
      541 tgtaagctcg tttgtacgaa aacatacaat acagagaagg ctgaagacaa acaaaagtta
      601 gacttcctga aaaaaagcat gctactgaac tatcagcatc actggattgt ggataatatg
      661 cctgtcacgt ggtgctatga ggttgaagac agtcagaagt tctgtaatcc tggatttccc
      721 attggctgtt acattacaga taaaggccat gcaaaggatg cctgtgttat cagttcagaa
      781 ttccacgaga gagacacttt ctacatcttc aatcatgttg acatcaagat atattatcat
      841 gttgttgaaa ctgggtctat gggagcaaga ttagtggctg ctaaacttga accaaaaagc
      901 ttcaagcata cccacataga taaaccagac tgctctggac ctgccatgga tataagcaac
      961 aaggcttcag gagagatcaa aattgcctat acttattcta ttagttttga ggaagagaaa
     1021 aacatcagat gggcgtctag gtgggactat attctggagt ctatgcctca cacccatatt
     1081 cagtggttta gcataatgaa ctccttggtt attgtcctct tcttatctgg aatggtagct
     1141 atgattatgt tacgcacgct acataaagat attgccagat ataaccagat ggactctacg
     1201 gaagatgccc aggaagaatt tggctggaaa ctagttcatg gggatatatt ccgtcctcca
     1261 agaaagggga tgctgctgtc tgtcttccta ggatctggaa cacagatttt aattatgact
     1321 tttgtaactc tgttttttgc atgtctggga ttcttgtccc ctgccaatcg aggagccctg
     1381 atgacatgtg ctgtggtctt gtgggtgcta ctgggcacac ctgctggcta tgttgctgcc
     1441 agattctaca aatcctttgg tggtgaaaag tggaaaacaa atgttttatt gacatcattt
     1501 ctttgtcctg ggattgtgtt tgctgacttc tttatcatga atctaatcct ctggggagaa
     1561 ggctcttcag cagccattcc ttttggcact ctggttgcca tcttggccct ctggttctgc
     1621 atatctgtgc ctttgacgtt tattggtgca tactttggct ttaagaagaa tgccattgaa
     1681 cacccagttc gaaccaatca gatccctcgt cagattcctg agcagtcgtt ctacacaaag
     1741 cctttgcctg gcatcatcat ggggggcatt ttgccttttg gctgcatctt tatacagctt
     1801 ttcttcattc tgaatagcat ttggtcccac cagatgtatt acatgtttgg tttcctgttt
     1861 ctggtgttta tcattttggt tattacctgt tccgaagcaa ctatacttct ttgctacttt
     1921 cacctatgtg cagaggatta ccattggcag tggcgttcct tccttaccag cggcttcaca
     1981 gctgtttact tcctgatata cgccatacac tacttcttct ccaaactgca gatcacgggg
     2041 acagcaagta caatcctgta cttcggttat actatgataa tggttttgat cttcttcctt
     2101 tttacaggaa caattggctt ctttgcatgc ttttggtttg ttaccaaaat atacagtgtg
     2161 gtgaaagtgg actgaagaag cccagtgtgt ccagttaaaa cagaaataaa ctaaatcttc
     2221 atccacaaag acctgttttg tgactacctt gagttttctc agacttattg gcctagtaat
     2281 ccttcagaaa caacatactt ccaagtccac ctctcccatg cacctgcacc tacaagatgt
     2341 gtttcaacac taaagcattt gtattgtgat tggattaagt atatattcag ttgttctcag
     2401 tgaagagcag atttaaatat tatgtgcatt tgtaaatacg atagctataa acttttcaat
     2461 acttctaatg gcagattata ggaggccata atactgatga aagactggac agttgattgt
     2521 aaataggatt ttctagactc ggtaggtgga aagaattatt tttctttgaa ggaaataact
     2581 ttttatcatg gtaattttga aggatgattc ctatgacatg ttcattgggg ggaatgtggc
     2641 ttttaaaaat cttgtattgg ttataattgt tcatatcttc ttacttttct gtgttgactt
     2701 cattattccc atggtattgg ccttttaaac tatgtgcctc tgagtctttg aatttataaa
     2761 tttgttatct taataaatat tgtaaaaatg tcttcattgt atcactccct gcatattgaa
     2821 gaaaactctg tgaatacaaa tgtgttggcc actatactat tttattggat gatattgaat
     2881 actgtggata cacactttct gtttccactt aagtgaaact gtcgggcttt gtcaagtctg
     2941 aattttcact ctgaaggaat gataaaaatt gtagtcatgc ctgtctggtc agataaatga
     3001 cacatttaga acttaaatgc aggccttata ttgttactat taaaaattta cactgtagac
     3061 tt
//
