LOCUS       NM_001360063            2525 bp    mRNA    linear   ROD 18-JUN-2024
DEFINITION  Mus musculus transmembrane 9 superfamily member 1 (Tm9sf1),
            transcript variant 2, mRNA.
ACCESSION   NM_001360063 XM_017316217
VERSION     NM_001360063.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2525)
  AUTHORS   Zhao,R., Liao,W., Tan,D., Huang,H., Hu,C. and Chen,M.
  TITLE     Comparative analysis of the expression patterns of TM9SF family
            members in mice
  JOURNAL   Gene Expr Patterns 52, 119366 (2024)
   PUBMED   38719197
REFERENCE   2  (bases 1 to 2525)
  AUTHORS   Hald,J., Galbo,T., Rescan,C., Radzikowski,L., Sprinkel,A.E.,
            Heimberg,H., Ahnfelt-Ronne,J., Jensen,J., Scharfmann,R.,
            Gradwohl,G., Kaestner,K.H., Stoeckert,C. Jr., Jensen,J.N. and
            Madsen,O.D.
  TITLE     Pancreatic islet and progenitor cell surface markers with cell
            sorting potential
  JOURNAL   Diabetologia 55 (1), 154-165 (2012)
   PUBMED   21947380
REFERENCE   3  (bases 1 to 2525)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB610966.1, BY767651.1, AK004754.2 and BE996262.1.
            
            On Jan 26, 2018 this sequence version replaced XM_017316217.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC017617.1, AK090065.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164143
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-205               BB610966.1         2-206
            206-206             BY767651.1         197-197
            207-804             BB610966.1         207-804
            805-2507            AK004754.2         816-2518
            2508-2525           BE996262.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..2525
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 28.19 cM"
     gene            1..2525
                     /gene="Tm9sf1"
                     /gene_synonym="1200014D02Rik; MP70"
                     /note="transmembrane 9 superfamily member 1"
                     /db_xref="GeneID:74140"
                     /db_xref="MGI:MGI:1921390"
     exon            1..778
                     /gene="Tm9sf1"
                     /gene_synonym="1200014D02Rik; MP70"
                     /inference="alignment:Splign:2.1.0"
     CDS             434..2254
                     /gene="Tm9sf1"
                     /gene_synonym="1200014D02Rik; MP70"
                     /codon_start=1
                     /product="transmembrane 9 superfamily member 1 precursor"
                     /protein_id="NP_001346992.1"
                     /db_xref="CCDS:CCDS27122.1"
                     /db_xref="GeneID:74140"
                     /db_xref="MGI:MGI:1921390"
                     /translation="MTVLGYPRSWSCHCLPVLILLLGIGHGPWVEGVTHYKPGDPVIL
                     YVNKVGPYHNPQETYHYYQLPVCCPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVE
                     KRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFLPHSHKIGLW
                     THLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRSDELLGLTHTYSVRWSETSVEHRSD
                     RRRGDDGGFFPRTLEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETSS
                     GGSSDDFDQGDNGWKIIHTDVFRFPPYRGLLCAVLGVGAQFLALGTGIIVMALLGMFN
                     VHRHGAINSAAILLYALTCCISGYVSSHFYRQIGGERWVWNIILTSSLFSVPFFLTWS
                     VVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNI
                     AREIPPQPWYKSTVIHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAIL
                     LSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQT
                     VEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD"
     exon            779..1400
                     /gene="Tm9sf1"
                     /gene_synonym="1200014D02Rik; MP70"
                     /inference="alignment:Splign:2.1.0"
     exon            1401..1586
                     /gene="Tm9sf1"
                     /gene_synonym="1200014D02Rik; MP70"
                     /inference="alignment:Splign:2.1.0"
     exon            1587..1860
                     /gene="Tm9sf1"
                     /gene_synonym="1200014D02Rik; MP70"
                     /inference="alignment:Splign:2.1.0"
     exon            1861..2508
                     /gene="Tm9sf1"
                     /gene_synonym="1200014D02Rik; MP70"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2485..2490
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tm9sf1"
                     /gene_synonym="1200014D02Rik; MP70"
                     /note="hexamer: AATAAA"
     polyA_site      2508
                     /gene="Tm9sf1"
                     /gene_synonym="1200014D02Rik; MP70"
                     /note="major polyA site"
ORIGIN      
        1 aggtcctccg caagcctacc gctccggcgc cgctgtctgg aagaccgggg cagaagccca
       61 agggcagcta cggggccccg tgaggccact ggcgcctctt tggccagccg gtacctcgca
      121 gtgaggaccc tggagctgcg gcgagtgccc cttccgtagc agcgagcccg ccgggcgttg
      181 ctatagaaac gggttggcac gcgcagcccc gggctgggga ggcctagagg cgtgaaccct
      241 aggttgggag tactattgag tgcacgccag gccccgtctt tgggatagat aagttctgtg
      301 gtgtggggat cgggaggccg aagggaggag gtggagccaa tgggcacttg agagaccaga
      361 accgggtcat catgatttga ttcctagttt ctgtaaccac gggattcccc caacaggttc
      421 tgctgcctta aggatgacag tcctagggta ccctcgaagt tggagctgcc attgtttgcc
      481 agtcctgata ctgttgctgg gcataggcca tgggccatgg gtggaaggtg tcacacacta
      541 caagcccggc gaccctgtca ttctatatgt caacaaagtg ggaccctacc ataaccctca
      601 ggaaacttac cactactatc agcttccagt ctgctgtcct gagaagatcc gccacaaaag
      661 tcttagtttg ggtgaagttc tggatgggga ccgaatggcc gaatctttgt acgagatccg
      721 ctttcgggag aatgtggaga agagaattct gtgtcacatg cagctcagtt ctgcacaggt
      781 ggagcagctg cgccaggcca ttgaggaatt gtattacttt gagtttgtgg tcgatgattt
      841 gccaatccgt ggttttgtgg gctacatgga agagagtggc ttcctgccac atagccacaa
      901 gataggcctc tggacacatt tggacttcca cctagaattc catggagatc gaattatatt
      961 tgccaatgtt tcggtgcggg acgtcaagcc ccacagcttg gatgggctgc ggtctgatga
     1021 attgctgggc cttactcaca cttacagtgt gcgctggtct gagacgtcag tggagcatcg
     1081 gagtgacagg cgccgaggtg atgatggagg cttctttcct cgaaccctgg aaatccattg
     1141 gttgtccatc atcaactcca tggtgcttgt gtttttactg gtgggttttg tggctgttat
     1201 tctaatgcgt gtgcttcgaa atgacctggc tcggtacaac ctagacgaag agacgagctc
     1261 tggcggctct agtgacgact ttgaccaggg cgataatggc tggaaaatta tccatacaga
     1321 tgtcttccgc ttccctccat accgtggtct gctctgtgct gtgcttggtg tgggcgccca
     1381 gttcctggcc cttggcactg gcattattgt catggcgttg cttggcatgt tcaacgtgca
     1441 ccgtcacggg gccattaact cagcagcgat cttgttgtat gccctgacct gctgcatctc
     1501 tggctacgtg tcgagccact tctaccggca aattggaggc gagcgttggg tgtggaacat
     1561 cattctcacc agcagcctct tctctgtgcc tttcttcctg acttggagtg tggtgaactc
     1621 agtgcattgg gccaacggtt caacacaggc gctgccggcc acaaccatcc tgctgctgct
     1681 gacagtctgg ctgctggtag gctttcctct cactgtcatt ggcggcatct ttgggaagaa
     1741 caacgctagt ccctttgatg caccttgtcg cacaaagaat atcgcccggg agatcccacc
     1801 ccagccctgg tacaagtcta ctgtcatcca catgactgtt ggtggcttcc tgcctttcag
     1861 cgccatctcc gtggagctgt actacatctt tgccacagtc tggggtcgag agcagtacac
     1921 tctgtacggc atcctcttct ttgtcttcgc catcctgctg agtgtggggg cctgcatctc
     1981 cattgcgctc acctacttcc agctgtctgg ggaagactac cgctggtggt ggcgatccgt
     2041 gctgagcgtc ggctccaccg gcctcttcat cttcctctac tcagttttct actatgcccg
     2101 gcgctctaac atgtcagggg cagtacagac agtagagttc tttggctact ctttactgac
     2161 tggctatgtc ttcttcctca tgctgggtac catctccttt ttttcctctt taaagttcat
     2221 ccgttatatc tatgttaacc tcaagatgga ctgagttcta agccacagaa ctctggctct
     2281 ttcctgcttt catcatgccc cattgatttc acttgatagc ttctcttctg accgaattgt
     2341 gtgatggcat tgtcgccttc cttccctctt tagagaggac ctggaaatta aaaatctcta
     2401 ttatataagg aatatatata tttgaacttt ttaagttgcc ttacgttttg gtcctgattt
     2461 tttttttctt tttacaatta ttaaaataaa atttattaag aaaaaggaaa aaaaaaaaaa
     2521 aaaaa
//
