LOCUS       NM_025453               1510 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus transmembrane 4 L six family member 20 (Tm4sf20),
            transcript variant 1, mRNA.
ACCESSION   NM_025453
VERSION     NM_025453.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Anderson,K.R., Singer,R.A., Balderes,D.A., Hernandez-Lagunas,L.,
            Johnson,C.W., Artinger,K.B. and Sussel,L.
  TITLE     The L6 domain tetraspanin Tm4sf4 regulates endocrine pancreas
            differentiation and directed cell migration
  JOURNAL   Development 138 (15), 3213-3224 (2011)
   PUBMED   21750032
REFERENCE   3  (bases 1 to 1510)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
REFERENCE   4  (bases 1 to 1510)
  AUTHORS   Quina,L.A., Wang,S., Ng,L. and Turner,E.E.
  TITLE     Brn3a and Nurr1 mediate a gene regulatory pathway for habenula
            development
  JOURNAL   J Neurosci 29 (45), 14309-14322 (2009)
   PUBMED   19906978
REFERENCE   5  (bases 1 to 1510)
  AUTHORS   Brunskill,E.W., Aronow,B.J., Georgas,K., Rumballe,B.,
            Valerius,M.T., Aronow,J., Kaimal,V., Jegga,A.G., Yu,J.,
            Grimmond,S., McMahon,A.P., Patterson,L.T., Little,M.H. and
            Potter,S.S.
  TITLE     Atlas of gene expression in the developing kidney at microanatomic
            resolution
  JOURNAL   Dev Cell 15 (5), 781-791 (2008)
   PUBMED   19000842
  REMARK    Erratum:[Dev Cell. 2009 Mar;16(3):482. Yu, Jing [added]]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK017209.1, AK017195.1, AK007532.1 and AV378190.1.
            
            On Jan 31, 2019 this sequence version replaced NM_025453.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK017195.1, AK007532.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849377,
                                           SAMN00849378 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-543               AK017209.1         5-547
            544-1475            AK017195.1         540-1471
            1476-1508           AK007532.1         1473-1505
            1509-1510           AV378190.1         206-207
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 42.48 cM"
     gene            1..1510
                     /gene="Tm4sf20"
                     /gene_synonym="1810018L02Rik"
                     /note="transmembrane 4 L six family member 20"
                     /db_xref="GeneID:66261"
                     /db_xref="MGI:MGI:1913511"
     exon            1..227
                     /gene="Tm4sf20"
                     /gene_synonym="1810018L02Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..725
                     /gene="Tm4sf20"
                     /gene_synonym="1810018L02Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     transmembrane 4 L6 family member 20"
                     /codon_start=1
                     /product="transmembrane 4 L6 family member 20 isoform 1"
                     /protein_id="NP_079729.1"
                     /db_xref="CCDS:CCDS15099.1"
                     /db_xref="GeneID:66261"
                     /db_xref="MGI:MGI:1913511"
                     /translation="MTCCEGWTSCNGFSLLILILLGVVINCIPLGISLVEADSTSQNP
                     ISCYEWWFPGIIGAGLMAIPATTMSLAARKRACCNNKTGMFLSSLFSVITVVGAVYCM
                     LVSLQALLEGPLICNTQANSTVTCEFSLKNLSKFDPESFNLLWFFNGTCVSPTDFKNP
                     TINNMVSNWKIPNSNSEEDRHRIFHFSVFMSLLLVGILELLFGLSQILIGFLGCLCGV
                     SQRRSQIV"
     exon            228..293
                     /gene="Tm4sf20"
                     /gene_synonym="1810018L02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            294..445
                     /gene="Tm4sf20"
                     /gene_synonym="1810018L02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            446..1510
                     /gene="Tm4sf20"
                     /gene_synonym="1810018L02Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcccagcca ccctgaggag gtttctaact gaaccaggaa aaccatgacg tgctgtgaag
       61 ggtggacatc ctgcaatggc ttcagcctgc tcattctgat cctgctagga gtggttatca
      121 attgtatacc cctgggaatc agcttagtgg aggcagactc gacttctcaa aaccccatct
      181 cctgctatga gtggtggttt ccaggaatta taggagcagg tctgatggcc atcccagcaa
      241 caacaatgtc cttggcagca agaaaaagag cgtgctgcaa caataagact gggatgtttc
      301 tttcatcact cttcagtgtg atcacagttg ttggtgctgt gtattgcatg ttggtatcac
      361 tccaggctct cttggaagga cctctaattt gtaatactca ggccaacagt actgtcactt
      421 gtgaattttc attgaaaaac ttaagtaaat ttgatcctga atccttcaat ctgctgtggt
      481 tcttcaatgg cacttgtgtt tctcctactg attttaaaaa ccccaccatc aataacatgg
      541 tcagtaactg gaaaataccc aactccaact ctgaagaaga cagacacagg attttccact
      601 tctcagtatt tatgagtctc ctgcttgttg gaatcctgga gctcctgttt gggctcagtc
      661 agatactcat tggtttcctt ggctgtctgt gtggcgtctc tcagcgacgg agtcaaattg
      721 tataaagggc aataaactag aatatcagta ctttgaataa tttgaaaatt gcatttaaaa
      781 tatatacttt tgtaagttca ataatgaagc atcttctaga acacagagtc attttagtgc
      841 aaacagatgt ttttagaatc atctctgaag caactttcaa aaaaaaaatt aacctatcaa
      901 gctgggcagg gctggtacag gccttcgatc ccagcactca ggagcagagg ctggaggatt
      961 cagagtttga ggcctgccta gtttacaaat gccaagacag ccaggactat acagagaagc
     1021 taaagcagag gactggcatg aactcgcact agcgcgtcct gtatgtgcag tgcacctcca
     1081 ctccgggggg agaagttacc agtgggtgac acaggggaga agcataggaa agcttttagg
     1141 tttctttttt cctatgtatg ccaaaagaac aattgtccac ctcatggtta cagaagtatg
     1201 tgtcttagtt ttaagaaata tatattatgt gttttgggag gaagaccatg ttttaaaaat
     1261 actttaccct caaagccaaa gtgatggaaa aatgctgtgt ttaactgaca ggcacatggc
     1321 aattcatcat actctatttt tttatgtttg tatctcttca tgatatctgc taagactttg
     1381 gggaaaaaaa atcagccttt tagaagctgg tttttatgta tgctgatctt taaaagatag
     1441 gtaacaaaat gtatttattg tattaaaatg ttatgaaata gaaaaaacta aaaatctaca
     1501 attttctgaa
//
