LOCUS       NM_001355678            6549 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus TLC domain containing 4 (Tlcd4), transcript variant 1,
            mRNA.
ACCESSION   NM_001355678 XM_006502477
VERSION     NM_001355678.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6549)
  AUTHORS   Kagami,Y. and Furuichi,T.
  TITLE     Investigation of differentially expressed genes during the
            development of mouse cerebellum
  JOURNAL   Brain Res Gene Expr Patterns 1 (1), 39-59 (2001)
   PUBMED   15018818
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC110195.14.
            
            On May 15, 2019 this sequence version replaced NM_001355678.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK147601.1, SRR10223970.5776.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164140, SAMN01164143
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-468               AC110195.14        150982-151449       c
            469-563             AC110195.14        123952-124046       c
            564-768             AC110195.14        123325-123529       c
            769-858             AC110195.14        119516-119605       c
            859-917             AC110195.14        117130-117188       c
            918-1012            AC110195.14        116592-116686       c
            1013-1086           AC110195.14        99580-99653         c
            1087-6549           AC110195.14        90290-95752         c
FEATURES             Location/Qualifiers
     source          1..6549
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 52.94 cM"
     gene            1..6549
                     /gene="Tlcd4"
                     /gene_synonym="4930577M16Rik; C730036B01Rik; Tmem56"
                     /note="TLC domain containing 4"
                     /db_xref="GeneID:99887"
                     /db_xref="MGI:MGI:1923195"
     exon            1..468
                     /gene="Tlcd4"
                     /gene_synonym="4930577M16Rik; C730036B01Rik; Tmem56"
                     /inference="alignment:Splign:2.1.0"
     exon            469..563
                     /gene="Tlcd4"
                     /gene_synonym="4930577M16Rik; C730036B01Rik; Tmem56"
                     /inference="alignment:Splign:2.1.0"
     exon            564..768
                     /gene="Tlcd4"
                     /gene_synonym="4930577M16Rik; C730036B01Rik; Tmem56"
                     /inference="alignment:Splign:2.1.0"
     exon            769..858
                     /gene="Tlcd4"
                     /gene_synonym="4930577M16Rik; C730036B01Rik; Tmem56"
                     /inference="alignment:Splign:2.1.0"
     exon            859..917
                     /gene="Tlcd4"
                     /gene_synonym="4930577M16Rik; C730036B01Rik; Tmem56"
                     /inference="alignment:Splign:2.1.0"
     exon            918..1012
                     /gene="Tlcd4"
                     /gene_synonym="4930577M16Rik; C730036B01Rik; Tmem56"
                     /inference="alignment:Splign:2.1.0"
     exon            1013..1086
                     /gene="Tlcd4"
                     /gene_synonym="4930577M16Rik; C730036B01Rik; Tmem56"
                     /inference="alignment:Splign:2.1.0"
     exon            1087..6549
                     /gene="Tlcd4"
                     /gene_synonym="4930577M16Rik; C730036B01Rik; Tmem56"
                     /inference="alignment:Splign:2.1.0"
     regulatory      6522..6527
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tlcd4"
                     /gene_synonym="4930577M16Rik; C730036B01Rik; Tmem56"
                     /note="hexamer: AATAAA"
     polyA_site      6527
                     /gene="Tlcd4"
                     /gene_synonym="4930577M16Rik; C730036B01Rik; Tmem56"
     polyA_site      6549
                     /gene="Tlcd4"
                     /gene_synonym="4930577M16Rik; C730036B01Rik; Tmem56"
                     /note="major polyA site"
ORIGIN      
        1 gacttgctgg gaaagcccgc gcaccgcaca ctgcacccgg gcagaggtgt gagctctcag
       61 ggttccttcg cagcccaccg cctaagctcg cggcttcgag ctcccgccgc gatccaagtc
      121 ccagcgccgg gaggtgggcc ccacgcgcgg cctccgggcc ccgcccactc tggcctgggg
      181 tcggagccgc ggcgagcgcc agcccagtcc gagcggccgc ggccccttta aggagccgct
      241 ctgcggtaac ccgagcccgc agtccgggcg ggcgcggcgg cagcggcggc gcgagcctcg
      301 gcgacagctc ctccgggctc ccccggcttt ccgcgagcat ctcgcgcgtg gctccggccg
      361 gcgcagcctt cgggccaggc tggatgacca ggcgcctgtg agccccgctg cgctctcccg
      421 gccccgcgta gccgccgccc gcgggagtcg tcccgggacc cggcacaggc aatggtctat
      481 gactttggct taaatgattc ttagacatta tccgaccaac tctttcaatt tatagatgag
      541 aaaactgagt caaagagaaa caggctgaag gactatggag gcgagtacca aggcggccgt
      601 cggcagtggg gctatggagg cgagcaccaa ggcggtcatc tgcactgttt gcagcagctt
      661 tgttgttttc cagattcttt tccattttgt cagttactgg ttttcagcaa gagtttcttc
      721 aggttataac agtcttagca tcgacaagaa gattgaatgg aactcaaggg tagtatccac
      781 gtgccactct ttgttagttg ggatttttgg cttatacctc ttcttcttcg atgaggccac
      841 tataactgat ccgctctggg gtgatccaac gtatgtgaac ataaatattg caactgcttc
      901 aggctacctc atttctgatt tattgattat actttttaat tggaaagtga tcggcgacaa
      961 attttttata attcaccatt gcgcaggact aactgcatac tactttgtat tgacaactgg
     1021 agcgcttgcc tacattgcca atttccgcct gcttgccgag ctttccagcc cctttgtaaa
     1081 ccagaggtgg ttctttgaag ccctgaagta ccccaagttt tccaaagcca atgtcatcaa
     1141 tggaattctt atgacggtgg tctttttcat cgtgcggatc atttcgatac ctccgatgta
     1201 tttcttcctt tactccgtgt acggaacaga accctacata aggttcggat ttgtaatcca
     1261 gtctgtctgg atcgttactt gtgttatttt agacgtgatg aatatcatgt ggatgatcaa
     1321 aatcacgaaa ggatgcatca aagtcatctc cctcatcaga caagagaaag ccaaggatag
     1381 ccttcagaac gggaaactcg actaaaggca tgcttcatcg gacaccttgc ttccataagc
     1441 catcttcatt cctctttgtc ccggccgaca cgatgagctc ctgcgccgct ctgttaggca
     1501 cggttgttac tcatggtttc agtgttcttt cctcttttct ttaatcttta gacaagagaa
     1561 aataaaattt agtcttcatc ccaggatttc ttctttcctt caatattttt aagcatggat
     1621 ggaaactgaa aggtttaaac aaaagttgta agtggagtgg ggaaactttt ctgaattcgt
     1681 cagtgttcat ggggattatt ctctgcagga aaatggctgg tgattcggtg gcctttgtac
     1741 accacccatt ttattttgct gaaggactga gaacggcttt tcagtctgcg agcagctccg
     1801 ttggctgtgc tccggtcttt tccaacatca gagcctgtgt agggtttcct ttctaagttg
     1861 ccagcacgtc ccttccccag gccatcagaa ctgacatggt ttcatggggg tatgcagtca
     1921 tctgttacgc tacgatagag cacttctcat gttgatccta tcatatttga aaatatttta
     1981 tgcattttta agatttcagc tgcttcgttt ctctctgtag tgctttatcc aattatattt
     2041 tgaaaatctt atagtcaggc aaggtttaag acccatcttg tggaccacat gaatgccgat
     2101 agtgaggact cccgggaacg tgcctcatca cgctgccttc gcctgcttcc gggtactttc
     2161 cccataaaga tcatatttct tcttgcaaag ttttccaagt tccaaacctg acaccagaac
     2221 accagtcttg tctagaatgt gcgcgctggg catgctcctg aaatcggcct cattttggtg
     2281 agactaaaac tacagacaag tcagagtttg tgctttactt agagatttta ctcaggcttg
     2341 cttagtttgt ctttgccttt ttgttttctt aaagagcaga aggaaggaag gtgacttacc
     2401 ccaagtattc tgattatcaa aactgtcatt cattgtgaaa aaaaaatcgt gtgtgtgtgc
     2461 gcgtgtagtg gggtgttttt cctttgattc ttgcaatcca aatatagaat tatatattta
     2521 gctattattg cctttattta tttttttctg aagtacttga ctttaatgat tgttcttaag
     2581 atatagactt aatccaatta gtggtgaata cttgaattta actgaactta aaccaaaaga
     2641 tctaatccat ttagagtatc agactgaagg agaacgtttg gctctttcat tattcatctt
     2701 aggctgatga actaatggaa tgtcatcaaa acatttaatg taatgtagtt tgatttaatt
     2761 gtctagtaca gatagagtct ggcaagttct ggtatgttta aagatgggaa ttgaaattcc
     2821 agtccaatga taaaaatcaa gtcgattgtc ttgttcttgg tgtatttact tttgaaagat
     2881 aaagtcatga aaaagatagg gctttgtctt taaagcagct aatgccacat ttgtaatggc
     2941 ttgctaagtt tagtgctgtc tccatcatag gcaactcagg tgtgcactgg ttgtgtaaaa
     3001 gtgaaggtat agggatgcaa atgattttat attgttcatg gctcttttac aagaaaatgg
     3061 gctttttttt tttaatggag agaagacatt tatattataa aactattttg gaaatccact
     3121 aagaaaagaa taaatcttga ggtaaatatg tttgtctctt tggctagtac tacagttctg
     3181 aacgcagatt ttaaactcgc cattaaaatg atggcagtgt atggttatga gtctctgtga
     3241 aggcgataat tgcttcatgc tgaaagggtc atttgtattt cgttgctttt atcattactc
     3301 gatataacca ataagtatgt tcggaatatc aaacattaaa cccagatttg ccattgtagc
     3361 ccttattatc tgcagcttcc agacttccac tctcctcatc ctttatagaa gggaactgtg
     3421 ttggaaatgt cctgcaaact gccactgcaa gccagccctc ccctggggct gtattttgct
     3481 gttttgtgat cacatttatc aacctaaaat acaaataaag acagaacata gtatttacta
     3541 aaacaatgaa attttcattt attgaatgac aaatttttgc tagatatttt agatataagt
     3601 attttggcta cattgattaa tttaagtgag tctattaggc attctgatat ttaacaagtc
     3661 ttaaaatatt tatagaaaat aaaagcaaat tggtataaat ttttaagcaa ttctattttt
     3721 ctagagaaga ttagtgacaa tctgaatatg tagtattcta gaaaataaac tttaaaaaaa
     3781 aaaagcaaaa ctcaactagt agcatgcaag actgtgggcc ctgcacttga tggtatgtta
     3841 tgtgctagac ttgaggtatt tggagcttgg gttcatagaa tttgcattct tgtgtctaaa
     3901 atcatttgga ggattctttg catttttttt taaattcaaa atggagttac atatgcatgc
     3961 aaagaaatta actcaaggta ccctggtgtg ttggcttttc aaacttgaaa tgggtatttt
     4021 ctattttgtt ttgtttgttt cctgttgttt cgtggaccag ttatgtgtcc agaggaattt
     4081 tggtaggttt taccatctct gagagtcacc ctgctttatt ttggataaac tgggtgcata
     4141 ggtttggaaa gttgcctaat ttataggtat ttggatgaaa ttcttccata aattttaata
     4201 atttgcttaa gtccaagttt ctgttcaagt gtcagatgtg taaattgctt cctctgaagc
     4261 cttgggcatt tagagacaag ttctttgtga ggtttctgcc taactcctgg aggcatttct
     4321 taggcatttg gaaatgtagt ttgtcatgag tgaatgcaca aaggaagaag ccccatcctt
     4381 acacacattt ctttgctttc attgttaaga aaaaatcaac atgtcccaca agactccatt
     4441 aacatatctg gatacgttta ttcctgcatt gctgttagct ccaactatgt taatatgaat
     4501 cttaacgatt ggtctgtgtg tattcattgc cttgctttaa gaactttagc agtctgtgca
     4561 gttgaaaagc ccacatagtt atgggcatca gtaatgtttc atagaaggtt atgtatcttg
     4621 tgttttggat ttcatcaaaa ggaaacattg tattctgtta gattggcaga gtgtttttcc
     4681 gcaggtgtga gccagcacac tagtgagaat cttcctgtat gaagagtctc tgaatgtgca
     4741 cacacacctc ccagccttaa ccacacctgg ctcatgccaa agctaccgaa agctaagcct
     4801 gatgcagaac tctgatgacg tgtgcagaaa tgagaaaatc ctccaggacc cggagtggga
     4861 ggagatagca agactgcttt tcctttcaga gatgctatct cttcctttat tgatcctttt
     4921 ctagctgagc ttgcctggct tgctcatcgc taatgcccca cagacttcag tatccccttt
     4981 ccatatgcca gggcctttct aatgtctctt tctcagacac caccactcat ctggatgcgt
     5041 cttaatttct tgtggcaagt ttcagagttt acaaacaggt ttcctcacgc acacaagcat
     5101 tgtaggaggt ataaataaag atctgacaaa ccacagttta ttaagaggct acaggaagcc
     5161 agtcagtgta taataatacc tgtttacaac atgaaacaaa ggtaattatg gttttattaa
     5221 gaaacatctg taagctcttt ctttaaccgg tttagcaata agagttttat aaagtgtttc
     5281 agctacggat ttattgtagg tgtgttaatt ttaataaatg ttctttatag accctatggc
     5341 agtattgagg atgcaaaaca gttttgatga cagcagggtc tggcttgtgg tgaattgttt
     5401 tagagtcttc aacgttaaac aatttccgtg gtactattta agacttccta gctaatgagt
     5461 tatttagtgt ttctcggagt acaacagcca gggacttgag cctctggttc ctttgtggtc
     5521 cagacttcag ctcccatcca ctagatagac tgtgtcatac tttgttttct attgcagtgg
     5581 tcagcttcga aagatgggtt tgtttgcatt gaaacattca aatgtatcca ctctgaagag
     5641 cagttttgat atcaggtcct acacaggacc aaacacaaag ctgcttctcc atctcagatt
     5701 cataagctct atacctctgc ctggaaatct gttagtcacc atctgtcctt tcctttgcat
     5761 ttttatgtaa ttctgcagtt ggtgtgtgtt ataataattt gctccttttt ggtgaatgga
     5821 acctaaaatt acggctgtaa ataaaatgtg ctctgtaatt ttgtttgttg cttgattggt
     5881 ttctgtggaa ttacatctgc tttttactta tggaattttt gtgtagatta tattcttaaa
     5941 agtaggataa actatgaagt ttttgagtta tttgaatttg taataacatt tcaacataga
     6001 tctaatttgc aaaagctact ttaaacctgc agtacatata tcagctatag tgagatgtac
     6061 gatttttctc tgatactata acatataata ttgtcaaaat atgcttaata atttatttcc
     6121 ataagactga agagttttat ttacaaaaca taagaccaca taatttatat ataaatcagt
     6181 gttactaagg tatatcagta attaaagtac aacctaggct cttcgatttg gtttctggtt
     6241 atgctttgtt tgaagggatg tcttttcagt actttcatta aacttttgaa atgtttgtat
     6301 actttgtatg tgtgccattt tgaagtttat gcaagttcta agcaataacc tgcatgttgg
     6361 acctggtcag catcctttgt catgacagtt tcctttaagt attaagaatg acacagatca
     6421 atattgtata actctcccct ctcccagtga acaccttggg agtttcctct gttaaaacac
     6481 tactataatg tggtgcaaaa ctttgtattt tgtgaaagaa aaataaagtc acgcttattt
     6541 agtgcaaaa
//
