LOCUS       NM_001025435            2043 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus T cell immunoglobulin and mucin domain containing 6
            (Timd6), mRNA.
ACCESSION   NM_001025435 XM_356544
VERSION     NM_001025435.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            AL669948.8.
            
            On Jul 22, 2009 this sequence version replaced NM_001025435.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC052651.1, AK140690.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-183               AL669948.8         147403-147585
            184-241             AL669948.8         150462-150519
            242-580             AL669948.8         153040-153378
            581-670             AL669948.8         160258-160347
            671-707             AL669948.8         162090-162126
            708-2043            AL669948.8         163787-165122
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 28.0 cM"
     gene            1..2043
                     /gene="Timd6"
                     /note="T cell immunoglobulin and mucin domain containing
                     6"
                     /db_xref="GeneID:407814"
                     /db_xref="MGI:MGI:3039605"
     exon            1..183
                     /gene="Timd6"
                     /inference="alignment:Splign:2.1.0"
     exon            184..241
                     /gene="Timd6"
                     /inference="alignment:Splign:2.1.0"
     CDS             193..771
                     /gene="Timd6"
                     /note="hepatitis A virus cellular receptor 1-like family
                     member"
                     /codon_start=1
                     /product="uncharacterized protein LOC407814 precursor"
                     /protein_id="NP_001020606.2"
                     /db_xref="CCDS:CCDS24580.1"
                     /db_xref="GeneID:407814"
                     /db_xref="MGI:MGI:3039605"
                     /translation="MVLPQVLLSTFLLLLPAASGAFQEVHGTGGDPVTLPCSYPESRI
                     LSFVCWGRGECASDTCGQTLVWTDGHRVNYRTSNRYQINSQLLQGNASLTIEYAYESD
                     SGLYCCRVEMKGWDGVQTLTTSLQIQPGSSSARTKGLAIGLSIFFLLLVLVGTLVITN
                     YILMKKRPESPSLVALCVSKIRTLLNKEVASP"
     exon            242..580
                     /gene="Timd6"
                     /inference="alignment:Splign:2.1.0"
     exon            581..670
                     /gene="Timd6"
                     /inference="alignment:Splign:2.1.0"
     exon            671..707
                     /gene="Timd6"
                     /inference="alignment:Splign:2.1.0"
     exon            708..2043
                     /gene="Timd6"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1998..2003
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Timd6"
                     /note="hexamer: AATAAA"
     polyA_site      2037
                     /gene="Timd6"
                     /note="major polyA site"
ORIGIN      
        1 gtgggtgaat tgaagaactg gagagactca gttttcaaca actcaaggga aggtgtggac
       61 aggagataag gatggaattc tgggagagct gagtctttat ccatcagctg ctcggcaaga
      121 gtccatcagc agcagaggat tagaaggaga gactaacaag aagttgtggc tttctcctaa
      181 ctggtcaacg tcatggtgct ccctcaagtc ctcctttcga cattcctact ccttctccca
      241 gctgcttcag gagcgttcca ggaagtccat ggaacaggag gtgaccctgt gacgcttcca
      301 tgctcttatc ctgaatctcg tatactctca tttgtgtgct ggggccgagg cgaatgcgct
      361 tctgatacat gtggacaaac attggtctgg actgatggac accgagtcaa ctatcggaca
      421 agcaaccgct accagataaa ctcgcagctt cttcaaggaa atgcatcctt gacaatcgag
      481 tacgcctatg agagcgacag cggtctctac tgctgtcgag tggaaatgaa gggatgggat
      541 ggcgtgcaga cactgaccac ctcactgcag attcaaccag gaagcagttc agccaggact
      601 aaaggccttg ctattggact ctccattttc tttctgcttc tggttcttgt gggcacatta
      661 gttatcacaa attacatcct tatgaaaaag aggccagaat ctccaagctt ggtagcatta
      721 tgtgtttcta agatcagaac tttactaaat aaagaggttg cttcaccatg agcacaagat
      781 gacgtctaca atattgaaga cagtcctcat atcaaagctt aagtttcagg agaagacctc
      841 tacggcatat caccagtctg gacgcccctg aagtgtcaag actatttccc gtcagttcat
      901 cttgaattcc cactttgcag ctgcagtgga gaggatggac ctctagctgt ctcttctcac
      961 actcactgtt gacatgatgc tgtctctcca cactatagat ccttctttca aacacgaaca
     1021 ctttaacatt ttgggtgtcc tttaggcccc aaaactcttt tatctgtgaa agacaattat
     1081 tggtaacttc tatcctggtt actaaaacca tccagcaaag aggaatagga ctttaaagta
     1141 aaactaaaat aaaacaaatg tggggagggt ggggattaat ttggaagtac ttcgtggttg
     1201 tgtcttgttt atttaattgg tggatgccat gcagaaagag ctgcagtggg caagtgagct
     1261 ccctagagat ggccccctgt cctgctcagc tctgatagga gcactgtggt gaggccacaa
     1321 agacttcgtc ccaggatggc ttcctgctac tgatgtactt tcccagattt gtcattgcca
     1381 tactcctcac ttatgtggct tggtgtgaat ggagaccaaa gatctccact gtctatagcc
     1441 tggtgtagtt acttcctgag tgatagctca ccctattggg catatttcct gcagatcatc
     1501 atgaaaatga actttcatga attaatgctg tttagatgaa ttaatgactg tacagaattc
     1561 cttgattcaa atcattttag gaagaaaatt taaggagata attttagctg ctttgccagg
     1621 aagatgtgat aaagttagaa tcaagaatag catgtgcccc cttctcatag aatagtaagt
     1681 aaatatatat ataaggaata caataagctt ttataaattg caataagaag agaaataggc
     1741 ttggaacaaa tttgtgatca aggaaaaaca ctcattctag gtcagatcca aggatgaagc
     1801 cacaggtgag caccatgata aagtgaggcc atgggaaact gttgctttga acttaaactg
     1861 agcttataga atgaaatact gctttgaatt tactatgagc atccttctgt aattcccttt
     1921 ttatgtaaca ttttatctgt gaggtaattt tataaagaac ttttgtctaa gaaggtataa
     1981 agaggctgaa agaaaaaaat aaagtgtggt tattggggct ctgctccatc catcaaatgt
     2041 gta
//
