LOCUS       NM_178646               4851 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus tigger transposable element derived 5 (Tigd5), mRNA.
ACCESSION   NM_178646
VERSION     NM_178646.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4851)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   2  (bases 1 to 4851)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4851)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   4  (bases 1 to 4851)
  AUTHORS   Willnow,T., Antignac,C., Brandli,A., Christensen,E., Cox,R.,
            Davidson,D., Davies,J., Devuyst,O., Eichele,G., Hastie,N.,
            Verroust,P., Schedl,A. and Meij,I.
  TITLE     The European renal genome project: an integrated approach towards
            understanding the genetics of kidney development and disease
  JOURNAL   Organogenesis 2 (2), 42-47 (2005)
   PUBMED   19521566
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC099838.1 and AK036241.1.
            
            On Oct 24, 2009 this sequence version replaced NM_178646.3.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC099838.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4056              BC099838.1         1-4056
            4057-4252           AK036241.1         4032-4227
            4253-4851           BC099838.1         4251-4849
FEATURES             Location/Qualifiers
     source          1..4851
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 35.07 cM"
     gene            1..4851
                     /gene="Tigd5"
                     /note="tigger transposable element derived 5"
                     /db_xref="GeneID:105734"
                     /db_xref="MGI:MGI:2145902"
     exon            1..4801
                     /gene="Tigd5"
                     /inference="alignment:Splign:2.1.0"
     CDS             57..1985
                     /gene="Tigd5"
                     /codon_start=1
                     /product="tigger transposable element derived 5"
                     /protein_id="NP_848761.2"
                     /db_xref="CCDS:CCDS79379.1"
                     /db_xref="GeneID:105734"
                     /db_xref="MGI:MGI:2145902"
                     /translation="MYPASPPAGPALHPVPHRARLPQPRCLAEPPRSPAPGPGSTARP
                     PPPPAPGPRPRVAVKMTFRKAYSIKDKLQAIERVKGGERQASVCRDFGVPGGTLRGWL
                     KDEPKLRWFLDQLGGEVGTQRKKMRLANEEEIDRAVYSWFLTLRQHGVPLSGPVIQAQ
                     AEAFARQIYGPECTFKASHGWFWRWQKRHGISSQRIYGEAESPVAGPAPVKEEPAQSP
                     GAVLVPDGAPATLPHSEGGYGDEQIYNANVTGLYWRLLPEQASTPGTGDSKEPGGCSR
                     RWRSDRVTVLLAANLTGSHKLKPLVIGQLPDPPSLRHHNQDKFPASYRYSPDAWLSRP
                     LLRGWFFEEFVPGVKRYLRRSCLQQKAVLLVAHPPCPSWATSMPPLEESEETPRQCQP
                     ELLGSPEELQTPDGAVRVLFLSKGTSRAHIPAPLEHGVVAAFKHLYKRELLRLAVSCA
                     SGSPLDFMRSFVLKDMLYLAGLSWDLVQAGSIERCWLLGLRAAFEPGQQPAHQVEETA
                     EHSRVLSDLTHLAALAYKRLAPEEVAQWLHLDDDGGLPEGCREEVAPAAPPSPASLPS
                     SIGAGEEEEEATEQGGVLVPTAGEAVWGLETALRWLESQDPREVGPLRLVQLRSLITM
                     ARRLGGIGPSAVTSDDGV"
     regulatory      2128..2133
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tigd5"
                     /note="hexamer: AGTAAA"
     polyA_site      2149
                     /gene="Tigd5"
                     /note="major polyA site"
     regulatory      2400..2405
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tigd5"
                     /note="hexamer: ATTAAA"
     polyA_site      2435
                     /gene="Tigd5"
                     /note="major polyA site"
ORIGIN      
        1 gcggcccgcg cggggtgtca ggctcgcttt cccgggtggt ccctggcgcc gacgccatgt
       61 accccgcgag ccctccggcc ggcccagccc tgcacccggt cccgcatcgc gctcgtcttc
      121 cccagccacg gtgccttgct gagccgccgc gatcgccggc gcccggcccg ggttccacgg
      181 cgcgcccgcc gccgccccca gcgcccgggc cgcggccccg ggtggccgtg aagatgactt
      241 tccgcaaggc ctactcaatc aaagacaagc tgcaagccat cgagcgcgtc aagggcggtg
      301 agcggcaggc cagcgtgtgc cgcgacttcg gcgtgccagg cggcactctg cgcggctggc
      361 tcaaggacga gcccaagctg cgctggtttt tggaccagct gggtggagaa gtgggcacgc
      421 agcgcaagaa gatgcgtctg gccaacgagg aggagatcga ccgcgccgtc tactcgtggt
      481 tcctcacctt gcgccagcac ggtgtgccgc tatccgggcc agttatccaa gcgcaggctg
      541 aggcctttgc tcgccagatc tacggccccg agtgtacctt caaggctagc cacggctggt
      601 tctggcgctg gcagaagcgc catggcatct ctagccagcg catctatggt gaggctgagt
      661 ccccggtcgc aggccccgcg cctgtcaaag aggagccggc gcagtcacca ggcgcagttc
      721 tcgtacctga cggcgcgcca gccactctac cccactccga gggcggctat ggcgacgagc
      781 agatctacaa tgctaacgtt actggtctct attggaggtt acttccggag caggcctcaa
      841 ctccgggcac tggggactcc aaagagcctg gtgggtgcag ccgacgctgg cgcagtgacc
      901 gagtgacagt actgctggcc gccaacctga cgggcagcca caagctgaaa ccactagtca
      961 tcgggcagct accggaccca cccagcctgc gtcaccacaa ccaggacaag ttcccggcct
     1021 cctaccgcta cagtccggat gcctggctca gtcgcccgct tcttcggggc tggttcttcg
     1081 aggaatttgt ccctggcgtc aagcgctacc tgcgccgaag ctgcctgcaa cagaaggctg
     1141 tgctgctggt ggcccatcca ccctgtccga gttgggccac tagcatgcct cccctggagg
     1201 agagcgagga gactcccagg cagtgccagc ctgagctcct tgggtcccca gaggaacttc
     1261 aaacacctga tggtgcagtt cgagtgctct tcttatccaa gggcaccagc cgagcacaca
     1321 tccctgcacc gttggagcac ggcgtggtgg cagccttcaa gcatttgtac aaacgcgagc
     1381 tcctgcggct tgctgtgtct tgtgccagtg gctcccctct ggacttcatg agaagcttcg
     1441 ttctcaagga catgctgtac ctggctggcc tctcttggga cttggtccag gcaggcagca
     1501 tagagcgctg ctggctgctg ggtctgcgag cagcctttga gcctgggcag cagccagctc
     1561 accaggtaga ggagactgcc gaacacagca gggtgctcag tgacctcaca catctggcag
     1621 ctctggctta caagcgcctg gcacctgaag aggtggccca gtggctacac ctggatgatg
     1681 atggaggcct tccggaaggc tgcagagaag aggtggcccc cgctgctcct ccatccccag
     1741 ctagcctgcc ctctagcatc ggggctggag aggaggagga ggaggccacc gaacaaggag
     1801 gagtgttggt acctactgct ggggaagctg tctggggact agagacagct ctgaggtggc
     1861 tagagagcca ggatcccaga gaagtggggc cgctgaggct tgtgcagcta cgttctctca
     1921 ttaccatggc acggaggctt gggggtattg ggccctcagc tgtaacttct gatgatggtg
     1981 tgtgactacc ttggcccagt ggtctttttc ctgcctcact gggagagagg gggcacatac
     2041 agtctgccat cttccacctt ttctccccgg tagtccactg tatgggtccg gggatgcaag
     2101 cccagcccag tttggaggag ttctataagt aaaggatgta ctgccccaat ccacagggtc
     2161 tggggaagtg gctatgttct tccctgggta ggcacatgtg ggcacataag cacagcccct
     2221 actggagaac agttgactgt acttccactc tggcccctat ggggctcaca cacacacaca
     2281 cacacctacc tgcctccgag tgcactgcct gaggctgctg ctgtttcatc tgcttccctg
     2341 gtgctacctg gtctcatctc agtggggaag catttggttc ttggttttgt tttaaaaaca
     2401 ttaaacctgt ttggaaagat gctcttcctg gggaacccat gagtgctgac tgacagggtg
     2461 aggtggtctc tggggctctc ttgcccttgc tctgataact caggtcctta tggtgctgga
     2521 tcaaagccca ggctaggctc catccagtcc ctggtgagcc cggtgcctgg tgaggttttg
     2581 gatgcagcag agagtatagc aaattctgtt ctacttggat ttttagtccc tcccactccc
     2641 cagccccctt taagtactcc attctggata ggtcttctat tcatgaggtt agcaagtgtt
     2701 tggatcaatg ggcaggacaa accacaaagc actttgttta gctccagggc agtctgatct
     2761 acctggaaac atgccctagc ctttgcaacc atctgggaac tctgcagtgc cttagagtca
     2821 acctctagcc ccatgggctc ttcctgcacc agccttctcc aggaactatg gctggatagc
     2881 ccaggttgaa ggagaaaagg ctcaaaggaa tgtccacatt ttgtatctgc tgctctgccc
     2941 agctgtggat tcagatgact gctggccgtc tggagctaag gcacctgcgt cttaaggagg
     3001 ggcactgtgt ctttgcagga attccatcca gagcctttgt cccggtcctc cttgtcttta
     3061 tgtctcctac tctgagcctt gcaaacatga agtggagaag ggatgtaaca gcttggcaat
     3121 gggcaaagcc ttgagtgacg tatccaaaag tgatttccac ctaggcccaa gaatatagtt
     3181 ccttggagcc acgactacat cccagtcaaa aatctgcata aatatcaaaa gctgagggaa
     3241 agcatagagc aacagaactg gagctcaggt agcaggctcc atctatgcac actaaggacc
     3301 atctgaccac ctaagtaccc agcctcccca aagatgacct agaaaacctt gggcaatcgt
     3361 ggctggtggg ggtctccagc actagctact tggctgggtt ttcaaaagtc taatgtgttt
     3421 ataccagcag cctccatatc agccagatac ccaggttagg aactaccatc cagctttgac
     3481 agacctgctt tcaaatctgc agagagccag atctgggcct tggaggtaca ctcaaggctg
     3541 ggtagcttct agtagctgct cttcagccta ggttacatgt actgttcttt tgaagaggtt
     3601 ccgatctggc ctgggctcag gtagactgga gttggcagag actagggctc aggagtaaga
     3661 cccctctcac cagcctctct aaaagcccct tttacttggg cccaggaggt tatgacctca
     3721 tattgctgct gccttataaa caagcaagta cggcctggct gagtgacagg gttcctgtca
     3781 ggtttgtgtt cgtgtactac cattaacggg gctagggaga tgcccatgag gctcaaaggt
     3841 gtcatctcag gctagggatg tagtgcagtg gtaggatgtc tgcctaggat gccaaaggcc
     3901 ctaggttcaa acaactgcac tgtaaaaaga agagaaaagt acacttagaa acattctggt
     3961 gttctttaca tgctctaggc gggggttcag atagctgcgt cctggttgtg gaggaggcta
     4021 ctttgcccag gttgtccagc agggagtcct atagctctga ggcttacagt gccgaacagc
     4081 ccagtgcaca gaggcctcag cccccatggc agttcacctt tctgtactca gtatctgatg
     4141 gagcttcaca gggctcatgg cccccccagg agagaacctt acactctcac tgtatatgta
     4201 tttatgtatg tatgtatata tatatatata tatatatata tatatatata tacactcacc
     4261 cattggtggt gtaccgcgct ccctgtgggc aggcactgag ctgcatgaac taatgaggtt
     4321 gaaactgtag ttcccttctt cagcagccat tgccacctgc tgtgtaccag gcctcactca
     4381 ggaatcccag ttcacttgcc cccagagctc ggcctgttcc ccaaagtgtg gtgatccttt
     4441 ggcttgggaa gtacaggcag ccttttctgc taggttctac cttggattca taaacagact
     4501 gtctggagaa agcacccagc ccagaaagat ggggagtgtg ggtttgttgg tgccaccagc
     4561 agtgggacac tgagcccttt acactaccta gttaggattg cctgtgggaa gcccagccgt
     4621 gacctggccc acaacttagc ctcttctgaa tgcatccaca agagcatctt gacgccagca
     4681 gctgtcctcc agaggcttgt gggcttcctg tcctattgta gggccctctc tctgccactc
     4741 agccctgctc acagctgaat tcacctggcc cgtgtaataa aggtgaaaca ggttgacgtc
     4801 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//
