LOCUS       NM_001362045            2139 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus tigger transposable element derived 3 (Tigd3),
            transcript variant 2, mRNA.
ACCESSION   NM_001362045 XM_006531776
VERSION     NM_001362045.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2139)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2139)
  AUTHORS   VanBuren,V., Piao,Y., Dudekula,D.B., Qian,Y., Carter,M.G.,
            Martin,P.R., Stagg,C.A., Bassey,U.C., Aiba,K., Hamatani,T.,
            Kargul,G.J., Luo,A.G., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Assembly, verification, and initial annotation of the NIA mouse
            7.4K cDNA clone set
  JOURNAL   Genome Res 12 (12), 1999-2003 (2002)
   PUBMED   12466305
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC142098.2.
            
            On Mar 31, 2018 this sequence version replaced XM_006531776.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC053500.2, CA532046.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-159               AC142098.2         179259-179417       c
            160-2139            AC142098.2         176427-178406       c
FEATURES             Location/Qualifiers
     source          1..2139
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 4.34 cM"
     gene            1..2139
                     /gene="Tigd3"
                     /note="tigger transposable element derived 3"
                     /db_xref="GeneID:332359"
                     /db_xref="MGI:MGI:2681860"
     exon            1..159
                     /gene="Tigd3"
                     /inference="alignment:Splign:2.1.0"
     exon            160..2139
                     /gene="Tigd3"
                     /inference="alignment:Splign:2.1.0"
     CDS             177..1589
                     /gene="Tigd3"
                     /note="tigger transposable element derived 3 homolog"
                     /codon_start=1
                     /product="tigger transposable element-derived protein 3"
                     /protein_id="NP_001348974.1"
                     /db_xref="CCDS:CCDS29483.1"
                     /db_xref="GeneID:332359"
                     /db_xref="MGI:MGI:2681860"
                     /translation="MELNTKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQ
                     ISRICKNKEKLLADWCSGTANHERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPML
                     LHKAKELADIMGQDFVPSIGWLVRWKRRNNVGFGTRQVLVPLFPPEAPPAVLPSQAQP
                     PLSLKDFSPEDVFGCAEVPLLYRAVPGRVFECDRLQVLLCANSRGTEKRRVFVGGLQA
                     APRCFFGVSSEALPTSYHPDLAIPWSEWLAQFDQDMGQQGRQVALLLASGVVEEWASL
                     PGLHHVRLLPLSASSTTPSLPGSVILAFKAHYRHRLLSKLAAMQSGKEGTSLAEARAS
                     ITVLDALHMVAAAWAKVPRQLILSSFVQEGLAPGKTPLSLDKDTEMSPVPSGLSQEEF
                     SHFVDLEDEDPGPRVCKEETGTEDSGREEDGFEPLPTKADALQALCTLRRWLECNSAS
                     PELFEKFYDCEVEVEQLCCL"
     regulatory      2115..2120
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tigd3"
                     /note="hexamer: AATAAA"
     polyA_site      2135
                     /gene="Tigd3"
                     /note="major polyA site"
ORIGIN      
        1 gacccgggtg agggctgtgc gcgctctgcg cgcgcccgct ccagagcagc ctctcggcgc
       61 gctctgtcct cgggtcgcgg cgcccgtcac tctctggttc tgctgaggcc caggaacctg
      121 gctggggcag ggactggagg cgcgggacgg cgcctggagc agcttcccag ggagtcatgg
      181 agctgaacac caagaagaag cttcacgccc tgtccctggc tgagaagatc caggtgctgg
      241 aactcttgga tgagtctaag atgtcccagt cagaggtggc ccggcgcttc caggtctcac
      301 agccccagat ctcacggatc tgcaagaata aggagaagct gttggcagac tggtgcagtg
      361 gcacagccaa ccacgagcgg aagcggaagc gtgaatccaa atacagtggg atcgatgagg
      421 ctctactgtg ctggtaccac attgcccgag ccaaggcctg ggatgtaacg gggcccatgt
      481 tgctccacaa ggccaaggaa ctggccgata tcatgggcca ggatttcgtg cctagcattg
      541 gctggctggt ccgctggaaa cgtcgaaaca atgtgggctt tgggactcgc caggtccttg
      601 tccctctgtt ccctcctgaa gctcctcctg cagttctccc atctcaggcc cagccacctc
      661 tttctcttaa agacttctca ccagaagatg tttttggctg tgctgaagta cccttgttgt
      721 atcgcgcggt gcctggcaga gtgtttgaat gtgatcggtt gcaagtactg ttatgtgcca
      781 acagcagagg cacagaaaag cgaagggtat ttgtgggtgg gctccaggcg gccccaagat
      841 gcttctttgg ggtgagcagt gaggcactgc ctacctctta tcaccctgac ctagccattc
      901 cctggtcaga gtggctggca cagtttgacc aggacatggg acagcagggc cgacaggtag
      961 ccttgctact ggcttctgga gtggtagagg aatgggccag ccttcctgga ctccatcacg
     1021 ttcgactcct gcctctctct gcctccagca ccactccttc cctgcctggc tctgtgattt
     1081 tggcctttaa ggcccattac cgtcaccgtc tactgagcaa actggctgcc atgcagagtg
     1141 ggaaagaggg cacctccctg gcggaggcca gggctagcat cacagttttg gatgctctgc
     1201 acatggtggc cgcagcttgg gccaaggtac ctcgccagct cattttgagc agctttgttc
     1261 aagaagggct cgctccgggc aaaacaccac tgtccctgga caaagacact gagatgtcac
     1321 cagtccctag tgggctgagc caagaggagt tttctcactt tgtggacctg gaggatgagg
     1381 acccagggcc tagagtgtgc aaagaggaga cgggtactga agacagtggg agggaagaag
     1441 atggctttga gcccctgccc accaaagccg atgccctgca ggcactgtgc accctgagga
     1501 ggtggcttga atgcaacagt gcctctccag aactctttga gaaattctat gactgtgagg
     1561 tggaggtgga gcagctctgc tgtctgtgag gaggcatagc tgcctattag tctccctctc
     1621 ctgtttccca tggaaacgcc tctccagaga cagactggct ctttcctgtg gaaatagtat
     1681 gtggagggtg tagaagggaa ggaagttgga acacaaagtc taaggtcaga gtaaaagttg
     1741 ttcaggccta gagtttctac ggatggggcc tcaagagtgg aaagctgggc tgtgtagctt
     1801 ctaggccctg gagaaacttc tagagctttg tggagagtta gtctaaatag ggtagaacct
     1861 agaaaggtgg accgacttcc tttttttgtt ttttgttttt tttttttctt tgagacaggg
     1921 tttctctgtg tagccctggc tttcctggaa ctcactttgt agaccaggct ggccttgaac
     1981 tcagaaaccc gcctgcctct gcctcccaag tgctgggatt aaaggtgtgc accaccatcg
     2041 cacagcatgg acagacttcc taacagtggc cccattcctt gaatttttgt gtcaaaacca
     2101 attctgcttc aggaaataaa gtttttagcc acaaagtca
//
