LOCUS       NM_001081145            3007 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus tigger transposable element derived 2 (Tigd2), mRNA.
ACCESSION   NM_001081145 XM_144820
VERSION     NM_001081145.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC124704.4.
            
            On Feb 6, 2007 this sequence version replaced XM_144820.6.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK019456.1, SRR1660819.155012.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-312               AC124704.4         66474-66785
            313-3007            AC124704.4         66943-69637
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 28.29 cM"
     gene            1..3007
                     /gene="Tigd2"
                     /gene_synonym="3632410O17Rik"
                     /note="tigger transposable element derived 2"
                     /db_xref="GeneID:68140"
                     /db_xref="MGI:MGI:1915390"
     exon            1..312
                     /gene="Tigd2"
                     /gene_synonym="3632410O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            313..3007
                     /gene="Tigd2"
                     /gene_synonym="3632410O17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             1124..2701
                     /gene="Tigd2"
                     /gene_synonym="3632410O17Rik"
                     /note="tigger transposable element derived 2 homolog"
                     /codon_start=1
                     /product="tigger transposable element-derived protein 2"
                     /protein_id="NP_001074614.1"
                     /db_xref="CCDS:CCDS39500.1"
                     /db_xref="GeneID:68140"
                     /db_xref="MGI:MGI:1915390"
                     /translation="MLGKRKRVVLTIKDKLDIIKKLEEGNSFKKLSVLYGIGESTVRD
                     IKKNKERIINYANSSDPTSGVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTIC
                     AKQARFFFDALGMEGDFNASSGWLTRFKQRHGIPKAAGKGTKLKGDETAASEFCGNFQ
                     EFVERENLLPEQIYGADQTGLFWKCLPTRTLAFDTDQSTCEYRTSRERIIIMCCANAT
                     GSHKLNLCVVGKAKRPRAFKGTDLSNLPVTYFSQKSAWIEPSVLKQWFEKCFVPQVQK
                     HLKSKGLREKAVLLLDFPAAHPAEELLSSDDGRIIVKYLPPNVTSLIQPMSQGVLTTV
                     KRYYRAGLIQKYMDEGNDPKTFWKNLTVLDAIYEASRAWNQIRSNTITRAWKKLFPGN
                     EENPSVSIDEGAILAANLATVLQNTEDCEHVNIENIEQWFDSRSSGSNCQVLADIVGA
                     ADRAKVTEQKPSRKTRKAELNPEKHISHKAALEWTENLLDYLEQQDDMLLSDKLVLRR
                     LRTIIRRKQRIQNKSHL"
     regulatory      2986..2991
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tigd2"
                     /gene_synonym="3632410O17Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3007
                     /gene="Tigd2"
                     /gene_synonym="3632410O17Rik"
                     /note="major polyA site"
ORIGIN      
        1 aacacgttcc tgcgggggcg cgcgcgcgca cctaatcccc tgccttccgg ctcggccgcg
       61 cagctccgtt gcgcgctcgc tctgcggtgg ctggcggggt cgacttcgct ggggacttcc
      121 tctgctggct ctgcgttctg gccggtcagg cggagcgatg cccgcaccct gcttcccggc
      181 gtcccgcgcg cctggtgacc agtcgctcgc tgtagggctg cggccgtgac cctctgcctc
      241 cgactttcac ccagcgtccg gctcggagct tgctggccgg cggtctcgga gaggccctgg
      301 tagtgtcagg aggtttcaaa ggctcgagta cctctaccac cccagcagct acttctgtgg
      361 tcatggagat cttcttgcac caggattact gtatggtctt cacccagcct accaccccct
      421 agttgcagcc ttgggtcctg atttccacca atgaagtttt ttatcctttc ttgaatcatg
      481 tgacatcact tgtccgctgt ttccctttca gttgccatta gcaataagtt ctttttggtt
      541 taaagtactg agttgtttgc ctgtccactt acattctaag aggtgagaca gctcacctct
      601 gctcgctgtg actttcatag gtactcatca agagtccttg ccttgaagag agcgttcact
      661 cacttggctg tctgacacag acatcaacag tcaggctgtg aggcttcctg ctccgtgttt
      721 ctgtctgtta agtgtgcaag cccgagtaaa actgttttct tgaacgtagc ataagaaaaa
      781 aagaaaaaga aaaaaagacc catggtaatg gcaaaaattg atcatcatga gaatgtttta
      841 gaaacctcgg taggacaata ttgattcaac ttagagcttt cagtaaggct gcaatttaat
      901 gaaaagagca aggaggaaga agagaaacaa gggttatctg gagctattcg ttgtcatagg
      961 aacaggttaa gttctaaaat gcaaagggaa aaactcggac tttcgttgaa aattgttata
     1021 acatccaagt cttagggaac agctgaggac tcttaagcct ccattttctg gtctctttgt
     1081 gttcaaatct aagttgttaa ttgtctaaaa taattagact aaaatgttgg ggaaacgtaa
     1141 acgtgtggtc ctgacaatta aagacaaact tgacattatt aagaagcttg aagaaggcaa
     1201 ctccttcaaa aaactttctg tcctgtatgg aattggtgaa tccacagttc gtgacattaa
     1261 aaaaaacaaa gagagaatta taaactatgc caacagttca gacccaacta gtggggtgtc
     1321 caagcgtaaa tccatgaagt cgtcaacgta tgaggagctt gacagagtga tgatagaatg
     1381 gtttaatcaa cagaaaacag atggcattcc agtgtctgga acgatctgtg caaagcaggc
     1441 taggttcttc ttcgatgcat tgggcatgga gggtgatttt aatgcctctt ctggctggct
     1501 tactaggttt aagcagcgcc acggtattcc aaaggctgca gggaaaggca caaaattaaa
     1561 aggggatgaa actgctgcca gtgaattttg tggtaacttt caggaatttg tggaaagaga
     1621 aaatctccta ccagaacaga tttatggtgc tgaccaaact ggattgttct ggaaatgtct
     1681 accaacgagg acattggctt ttgacacgga ccagagtact tgtgaatata ggacaagcag
     1741 agaaagaatc attattatgt gttgtgcaaa tgccacaggt tcacacaagc ttaatctctg
     1801 tgttgtgggg aaagcaaaaa gaccccgtgc attcaaaggt actgaccttt caaacctccc
     1861 tgtcacttac ttcagtcaaa aaagtgcatg gatcgagcca tctgttctca aacagtggtt
     1921 tgaaaagtgc tttgtgccac aggtgcagaa gcatctgaaa tccaaagggc ttcgagaaaa
     1981 agcagtacta cttttggatt ttcctgcagc acatccagct gaagaactgc tgagctcaga
     2041 tgatggcaga ataattgtga aatatttgcc accaaacgtc acaagtctaa ttcaacctat
     2101 gagccaggga gttctaacca cagtcaaaag atattaccga gcaggactta tccagaagta
     2161 catggatgaa ggaaatgacc caaaaacatt ttggaagaat ttgactgtgt tggatgcaat
     2221 ttatgaggca tcaagagcct ggaaccagat aagatcaaac accataacca gagcgtggaa
     2281 aaaacttttc cctggcaatg aggaaaaccc gagtgtgagc atcgatgaag gagccatttt
     2341 agcagctaat ttagcaacgg ttttgcagaa tactgaagac tgtgaacatg ttaacattga
     2401 aaatattgag cagtggtttg actctcggag tagtggctca aactgtcagg tgttagctga
     2461 cattgtaggt gctgcagacc gggcgaaggt cactgagcaa aaaccttcta ggaaaactag
     2521 gaaagcagaa ctgaatccag agaagcatat tagtcataaa gctgcacttg aatggactga
     2581 aaacttgctg gattatctag aacaacaaga tgacatgcta ctctctgata agctggtatt
     2641 gcggaggctt cggaccatta taagaagaaa acagagaata caaaataaaa gtcatctata
     2701 atactccctt ctgttgctat gtattttcat ctttgtgact tctatctgca gtggaattta
     2761 tctaaagcca aataaatgtt acagatgatt aggattagat gatgttttgg attacttaaa
     2821 ttacacctct ttaatgttgg ctctgattga gcaatgacat ggaattcatt tgtcagtgtc
     2881 taaactgttt tatactaatt agatcatagt atactggagg ctgagatatg ttgtgtactg
     2941 aatttcaaca tgtctagtga tgggcaatgc acactgtagg ctctcaataa atcttgctca
     3001 aattgaa
//
