LOCUS       XM_006501237            2546 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus TRAF-interacting protein with
            forkhead-associated domain (Tifa), transcript variant X2, mRNA.
ACCESSION   XM_006501237
VERSION     XM_006501237.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006501237.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2546
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..2546
                     /gene="Tifa"
                     /gene_synonym="T2bp"
                     /note="TRAF-interacting protein with forkhead-associated
                     domain; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 ESTs, 97 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 16 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:211550"
                     /db_xref="MGI:MGI:2182965"
     CDS             734..1288
                     /gene="Tifa"
                     /gene_synonym="T2bp"
                     /codon_start=1
                     /product="TRAF-interacting protein with FHA
                     domain-containing protein A isoform X2"
                     /protein_id="XP_006501300.1"
                     /db_xref="GeneID:211550"
                     /db_xref="MGI:MGI:2182965"
                     /translation="MSTFEDADTEETVTCLQMTIYHPGQQSGIFKSIRFCSKEKFPSI
                     EVVKFGRNSNMCQYTFQDKQVSRIQFVLQPFKQFNSSVLSFEIKNMSKKTSLMVDNQE
                     LGYLNKMDLPYKCMLRFGEYQFLLQKEDGESVESFETQFIMSSRPLLQENNWPTQNPI
                     PEDGMYSSYFTHRSSPSEMDENEL"
ORIGIN      
        1 tattgcctgg gtttatttgg cacaatcact tggcaatgtc ttatcttgta cctgctttga
       61 tacagctcaa tcgaaagaag attccgtggc tgtctcttct tccaagaagg aataataaac
      121 gttgatcatt aaccaacgaa attacatccc ttactggaat ctgcctcact taaatgtact
      181 taagtccttt cccagccgag gcttcccagc agaattgggg ggggggggga ggccctccag
      241 tagactgaca acagtgcaga agccacatca ttttattgtc ccagaaaaag acctacctcc
      301 cctgacatta aggacagagt ccagacaaat aaacagtttc catggaaaga ctgtgggaat
      361 tgctattcag gttcccaagc agaggggacg acggaacgga caactagaac atccttggca
      421 acttctacag tcactctggt tctcttcgct ctgctctcca tcgctcttct ccctaaatag
      481 aagccctctc ctacctctct ccacagctgc cttctgtatt tccatcccaa cctccttgaa
      541 cttcggaaat tagtgtccgg gtatccagtc ggtcctctga aagaccctca cgaggctgtt
      601 gcccctgtca ccactcagca ctaggtgttg ggcgaagaaa ggttggttag ccggaagtga
      661 caggagagga gacaaggctc aggagtcctg atctagctgt ggccactgga agactctcag
      721 gccggggagc gtcatgtcca cctttgaaga cgctgataca gaggagacgg tcacttgtct
      781 ccagatgacc atttaccatc ctggccaaca aagtgggata tttaaatcaa taaggttttg
      841 cagcaaagag aagtttcctt ccattgaagt ggtgaaattt ggacgcaatt ccaacatgtg
      901 ccagtatacg tttcaggaca aacaggtgtc ccgaattcag tttgttttac agccgtttaa
      961 acagttcaac agctccgttc tctcgtttga aataaaaaac atgagcaaga aaaccagttt
     1021 gatggtagac aaccaggagc tcggctacct caataaaatg gacctgcctt acaagtgtat
     1081 gctcaggttc ggagagtatc agttcctgtt gcagaaggaa gacggagagt cggtggaatc
     1141 ttttgagact caatttatca tgtcttcaag acctctcttg caagaaaaca actggccaac
     1201 acagaatccc ataccagagg atgggatgta ttcttcatac ttcacccaca gaagttctcc
     1261 ttcagaaatg gatgaaaacg aactgtgaag agggtccaac tggagacaca ttgaaggatg
     1321 aggacacatg ggtcggatgt caagagacat cctacttccg agtttgtgag tgtagcgtag
     1381 cgcggctgtc ctcatgctga ctttcgtttt ggtaatagca tttggaagtc tctagactgt
     1441 gttaatcatc aacttagtca actgagtttc ggctctacaa agaattaagt gtacatctgt
     1501 aagggttggt gcatcagaca cgtcttctgg gtaatgaggt cacccttgtt gcttttctgc
     1561 atgatgttac ccccatgctt tgtcttggtg gcagccatct cttggcccgg tcacatcatt
     1621 tcgtagcagc ctttgttttt caggtttaga gctcgggcag attgctcact ggtgtctgtg
     1681 gcgtgctagc gcttgtagaa ctagagtcct ggaataagtt ctagagtgct gagtcactga
     1741 gtcaccatgg cttccttatg gaaagacttg ggaaatagct ccttgatttt ctttctgtgg
     1801 aacggtagtg tcgctttcct atatgtagga cctacaacaa acatttaaag aacactgaga
     1861 tgaagatggt tttcttacaa tattgaaagt gaattttatg tatctcacag atttaaaaat
     1921 ggcagaaatc aaaactttta acagcctctt tgcacatgat aaagccggag cccagttcct
     1981 tagttgcttc tttggaactt cttaaaggaa aacatgtatt cttaaaggaa aacatctatt
     2041 cttaggctgc cctatagaag tcagtacctg tgaatattta tattaaatgc ttaattattt
     2101 ctaaaatttt agtttcacat aaagttgtat ttatttaaaa gattctcatt cacttcattt
     2161 tggctagatt aagatgaatg ttagtgaaca ttatgtaaaa gaggatgaaa gccattaagt
     2221 taagataaat tctagcatta ctagtaagta aggcaccctg tatagcttcc tctgtaaatg
     2281 aaatttaatg ctgtaacagg tacaggattt tgggtagggg aggaggtcag gtgggggaag
     2341 ttagccacat tcatattttg tttttgtttt tgtttttgtt tttgtttttg ttttccaaca
     2401 atagcttgct ttgaagctca ggctggcttg gaactcttga tcctcataca tcggccccct
     2461 gaatgctgtg cctagcttaa tgtaactgta tttctgcaac agccctttga aattatttct
     2521 aataaactgt ttggcctagt accatg
//
