LOCUS       XM_036166018            4001 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus cytotoxic granule-associated RNA binding
            protein 1 (Tia1), transcript variant X9, mRNA.
ACCESSION   XM_036166018
VERSION     XM_036166018.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000072.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4001
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="6"
     gene            1..4001
                     /gene="Tia1"
                     /gene_synonym="2310050N03Rik; mTIA-1; TIA-1"
                     /note="cytotoxic granule-associated RNA binding protein 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 mRNAs, 13 ESTs, 3057 long SRA reads, 2
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 38 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:21841"
                     /db_xref="MGI:MGI:107914"
     CDS             831..1571
                     /gene="Tia1"
                     /gene_synonym="2310050N03Rik; mTIA-1; TIA-1"
                     /codon_start=1
                     /product="cytotoxic granule associated RNA binding protein
                     TIA1 isoform X5"
                     /protein_id="XP_036021911.1"
                     /db_xref="GeneID:21841"
                     /db_xref="MGI:MGI:107914"
                     /translation="MATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR
                     KPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIME
                     IRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
                     GYPPTYGQWGQWYGNAQQIGQYVPNGWQVPAYGVYGQPWSQQGFNQTQSSAPWMGPNY
                     SVPPPQGQNGSMLPSQPAGYRVAGYETQ"
ORIGIN      
        1 tgccggctcc taggcgtccg gctcgccgcc atcttggatc ggggtttcat tgttcgcggt
       61 aggccgggcc tttttttgtg taatcgctgc caaagaagaa agcgaagtag cctccggtca
      121 agcgaggagg ccggctcttc cgcagccata gcccgcctca aggatttggg aggtagcgaa
      181 gggcagggag ctggaccctg aggtgccgcc gcgaccgcag cagccatgga ggacgagatg
      241 cccaagactc tatacgtcgg taacctttct cgagatgtga cagaagctct catcctccag
      301 ctctttagcc agattggacc ttgtaaaaac tgcaaaatga ttatggatac agcaggaaat
      361 gacccatact gttttgtgga gttccatgag caccgtcatg cagctgcagc cctggctgcc
      421 atgaatgggc ggaagataat gggtaaggaa gtgaaagtga attgggcaac aacccctagc
      481 agtcaaaaga aggatacgag cagtagtacc gttgtcagca cacagcgttc acaagtctga
      541 gttcacttgc acatggattc acataaactg aatggtgtaa tgtctgggca accaaaactg
      601 ttggcttttg agaaaactgt caaatacttt aacatcaaac tgttgcaatg caagatcatt
      661 tccatgtgtt tgttggtgac ctcagtccag aaatcacaac cgaagacatc aaagcagcgt
      721 ttgcaccatt tggaagaatt tcagtgtctc tgaagaatgg acagaattgc cctggctaac
      781 tacaagctac ggttcacagt ggataaatag atgcccgtgt ggtaaaagac atggctaccg
      841 ggaagtctaa gggatatggc tttgtctcct ttttcaacaa atgggatgca gaaaatgcca
      901 ttcagcagat gggtggccag tggcttggtg gaagacaaat cagaactaac tgggcaaccc
      961 gaaagcctcc agctccaaag agtacatatg agtcgaacac caaacagctg tcatatgatg
     1021 aggttgtgag tcagtctagt cccaacaact gcactgtgta ctgtggaggg gtgacgtcag
     1081 gactgacaga acaactaatg cgtcagactt tttctccatt tggacaaata atggaaattc
     1141 gagtcttccc agataaagga tactcatttg ttcggttcag ttcccatgaa agtgcagcac
     1201 atgcgattgt ttctgttaat ggtactacca ttgaagggca tgtggtgaaa tgttattggg
     1261 gcaaagagac tcttgatatg ataaaccctg tgcaacagca aaatcaaatt ggatatccac
     1321 caacatatgg ccagtggggc cagtggtatg gaaatgcaca acagattggc cagtatgtgc
     1381 ctaacggttg gcaagtacct gcctatggag tgtatggcca gccatggagc cagcaggggt
     1441 tcaatcagac ccagtcttct gcaccgtgga tgggacccaa ttacagtgtg ccaccacctc
     1501 aagggcagaa tggcagcatg ttgcctagtc agcctgctgg gtatcgagtg gccgggtatg
     1561 aaacccagtg aaaacagact acagaacgga agccagtggc ttgaagccac agggagggta
     1621 ggaaaactgt tgtttacgta aagatttatc aaatcagtca gtacaaatgc cagatacaat
     1681 gtatttattt aaaagattca tttttttaat catgaaatta cttttcatcc acattgtttt
     1741 aaaaaggaac acgatggtgg atgtttgcca atttttgcct tcattatctt ttttgataaa
     1801 gtttctcaga tccttgtttc aaagacaaat gcagggatta ctgccacttt tttaaaaata
     1861 agaggcagaa aattgcacaa tgttgaactt ttctccacta aaatcgtgtg cagttttagt
     1921 ttgcattcct gataggattt aaaacatgta atatagatgt aaaaaaaaaa aaaaaaagcc
     1981 aaacttgtgc aaagtctaga agttctctat gactttcagt atgcacacag ttgtcttagg
     2041 tttaaagagt aatagacgtt tcgtgaacta taccatctcc actattatcc ctttggaatt
     2101 tttaaatgta aattattagt ttatatcatt ttatatccac attttttcac aaatttgtcc
     2161 tgccttatga aatatctgta aaatattctt aaatgaaaaa aaatgatgtt cacttagatt
     2221 gaaaactttt ctcagatgga ccgataattg cattcatctt gtttttataa gagaaggtgc
     2281 ctcaaggatt ccctgttgga tttgtttaaa aggacttttt atcttctgtg ataacctttg
     2341 ccatgtacca ggaactagga aaacaagaaa cttgttctaa agagatctgc aatgtgataa
     2401 gtcctcgccg catcagtctc gtgcgtcagc atttatgttt acacgcattg ttgtctaaga
     2461 tacttcagca agtcatgttg tgcagttagc aaactttgta tgtcatttcc tcctacaggt
     2521 gtcatgaaga gttgacgtaa gacagatttt acatttgcat gtgaatatca catacatact
     2581 ttggtagtct ttgatacaaa ctcatctgct cttctttttc aagcattttg agacacaaag
     2641 ttgtatgtaa aggaatatat taattagatt ttttttagtt agatttactt taaaaagtaa
     2701 atccacttta atgtgtacaa atgatagctg tgaaactgta gagtttttct ctgtcaggct
     2761 tgggattcac taagaactcc aaaactagcc tgaaggacca gccgggcaaa acatttttta
     2821 aatattcaga ggccaaaata tgagcaaaca aataaaaaaa ctcttaaaag tcctacctcc
     2881 ttaaacagcc ttcaaggcaa agcccctgcg cacaggcatg gctttggtct tggtccctgg
     2941 tctcttggag cccccatagt actattgagg tttactcttc actggcgttg ttctagcctt
     3001 ggggttccta atatatttca gagtctcttg gtttggtgtg gttttagtga tgaccacacc
     3061 ttctcctcac agtagagagg aaggagccct gtgcactgtg ggtttgaggc ctgcagagag
     3121 ctcccagcat tttacttggg cctatggaat tggaagcatt tcctggcctg tatctttcag
     3181 gtaggagcac acaactctaa cctgttttct aagccagtcc ccttgtacaa cagagcccag
     3241 gaagacagtc tcaaatgtgt gcttctctgg agctcaattc tatgcagttg tgctaatgtt
     3301 tcattaagtc actgtgtatt tttaagtact aaaacattga aatttgcttt atggaagatg
     3361 aataaatttt ttaaatactt ggaattttat ttctttgtaa acttctacag atcaggacag
     3421 acaataaaag cagcttaaat aaaatactaa aaacaaaaag acaaaaccca cacaccagga
     3481 tgctatcttt aagtttttct ggatttgtct ctattttagc atccttagta tatgtctttg
     3541 tttaagaatt ttacttcctt tgtaacttta ggctgcagga tcttttgggc acaagtaatt
     3601 tattgtgtgc aaaagtgtag tttctctctt cttttgactc tttcaagtac taaggacttt
     3661 tattagtagc atattcttat tgcacagatc ttaaaattca tgttgatttg ctgttaagaa
     3721 ggtggtggtg ctgtgttcct gatgaaagac tgacatatca ggaacatagc tgttgttagt
     3781 ttaaataaat catttaagtc atttctcaac ctaaaaaact tcatcctggt ataagtatca
     3841 ggtaaggaaa tgaaggtttt taaagtgaac ttccttgcaa tatgcattca ggttttattc
     3901 tctggtactg taaagaacct gagtgactct cagtgggtca tggagccagt attctttatc
     3961 ctgactgttt ggatattaaa attcctttat gttttatatg a
//
