LOCUS       XM_036166017            4512 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus cytotoxic granule-associated RNA binding
            protein 1 (Tia1), transcript variant X8, mRNA.
ACCESSION   XM_036166017
VERSION     XM_036166017.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000072.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4512
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="6"
     gene            1..4512
                     /gene="Tia1"
                     /gene_synonym="2310050N03Rik; mTIA-1; TIA-1"
                     /note="cytotoxic granule-associated RNA binding protein 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 10 mRNAs, 19 ESTs, 3189 long SRA reads, 2
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 39 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:21841"
                     /db_xref="MGI:MGI:107914"
     CDS             1342..2082
                     /gene="Tia1"
                     /gene_synonym="2310050N03Rik; mTIA-1; TIA-1"
                     /codon_start=1
                     /product="cytotoxic granule associated RNA binding protein
                     TIA1 isoform X5"
                     /protein_id="XP_036021910.1"
                     /db_xref="GeneID:21841"
                     /db_xref="MGI:MGI:107914"
                     /translation="MATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR
                     KPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIME
                     IRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
                     GYPPTYGQWGQWYGNAQQIGQYVPNGWQVPAYGVYGQPWSQQGFNQTQSSAPWMGPNY
                     SVPPPQGQNGSMLPSQPAGYRVAGYETQ"
ORIGIN      
        1 tgccggctcc taggcgtccg gctcgccgcc atcttggatc ggggtttcat tgttcgcggt
       61 aggccgggcc tttttttgtg taatcgctgc caaagaagaa agcgaagtag cctccggtca
      121 agcgaggagg ccggctcttc cgcagccata gcccgcctca aggatttggg aggtagcgaa
      181 gggcagggag ctggaccctg aggtgccgcc gcgaccgcag cagccatgga ggacgagatg
      241 cccaagactc tatacgtcgg taacctttct cgagatgtga cagaagctct catcctccag
      301 ctctttagcc agattggacc ttgtaaaaac tgcaaaatga ttatggatac agcaggaaat
      361 gacccatact gttttgtgga gttccatgag caccgtcatg cagctgcagc cctggctgcc
      421 atgaatgggc ggaagataat gggtaaggaa gtgaaagtga attgggcaac aacccctagc
      481 agtcaaaaga aggatacgag cagtagtacc gttgtcagca cacagcgttc acaagtctga
      541 gttcacttgc acatggattc acataaactg aatggtgtaa tgtctgggca accaaaactg
      601 ttggcttttg agaaaactgt caaatacttt aacatcaaac tgttgcaatg caaggtattt
      661 ctttgattgt tcttcacaaa ataatggcta aaccaagtat ttcatgtagc tagcttcagt
      721 aagttgcctt aaataaggca aatctagtct tcataactct cagtacaact agttaattgt
      781 aatttataaa gcctagatgt agtaataaaa tgagtaacat taaataatta ctgttagaat
      841 aactaagttt tacttttttt ttttacagaa ctgaaagttt ttatgttagt agtttgtttc
      901 ctagaccctt ataattattg taataactgt aaatagacag tgactaccag cttctggtag
      961 ctatcagtcc ttttagaaga ctactgtgtt gttaactttg atttgttatg tttaagattg
     1021 ataggatttt atagcgagga tagtatttta tttataccta attatatagt ctgtgcatta
     1081 ttttaagaat actttattgg gtcagttgtc gtatttaagt tctgaagttg tatttttctt
     1141 ttcactcccc tccttccttt gtaagatcat ttccatgtgt ttgttggtga cctcagtcca
     1201 gaaatcacaa ccgaagacat caaagcagcg tttgcaccat ttggaagaat ttcagtgtct
     1261 ctgaagaatg gacagaattg ccctggctaa ctacaagcta cggttcacag tggataaata
     1321 gatgcccgtg tggtaaaaga catggctacc gggaagtcta agggatatgg ctttgtctcc
     1381 tttttcaaca aatgggatgc agaaaatgcc attcagcaga tgggtggcca gtggcttggt
     1441 ggaagacaaa tcagaactaa ctgggcaacc cgaaagcctc cagctccaaa gagtacatat
     1501 gagtcgaaca ccaaacagct gtcatatgat gaggttgtga gtcagtctag tcccaacaac
     1561 tgcactgtgt actgtggagg ggtgacgtca ggactgacag aacaactaat gcgtcagact
     1621 ttttctccat ttggacaaat aatggaaatt cgagtcttcc cagataaagg atactcattt
     1681 gttcggttca gttcccatga aagtgcagca catgcgattg tttctgttaa tggtactacc
     1741 attgaagggc atgtggtgaa atgttattgg ggcaaagaga ctcttgatat gataaaccct
     1801 gtgcaacagc aaaatcaaat tggatatcca ccaacatatg gccagtgggg ccagtggtat
     1861 ggaaatgcac aacagattgg ccagtatgtg cctaacggtt ggcaagtacc tgcctatgga
     1921 gtgtatggcc agccatggag ccagcagggg ttcaatcaga cccagtcttc tgcaccgtgg
     1981 atgggaccca attacagtgt gccaccacct caagggcaga atggcagcat gttgcctagt
     2041 cagcctgctg ggtatcgagt ggccgggtat gaaacccagt gaaaacagac tacagaacgg
     2101 aagccagtgg cttgaagcca cagggagggt aggaaaactg ttgtttacgt aaagatttat
     2161 caaatcagtc agtacaaatg ccagatacaa tgtatttatt taaaagattc atttttttaa
     2221 tcatgaaatt acttttcatc cacattgttt taaaaaggaa cacgatggtg gatgtttgcc
     2281 aatttttgcc ttcattatct tttttgataa agtttctcag atccttgttt caaagacaaa
     2341 tgcagggatt actgccactt ttttaaaaat aagaggcaga aaattgcaca atgttgaact
     2401 tttctccact aaaatcgtgt gcagttttag tttgcattcc tgataggatt taaaacatgt
     2461 aatatagatg taaaaaaaaa aaaaaaaagc caaacttgtg caaagtctag aagttctcta
     2521 tgactttcag tatgcacaca gttgtcttag gtttaaagag taatagacgt ttcgtgaact
     2581 ataccatctc cactattatc cctttggaat ttttaaatgt aaattattag tttatatcat
     2641 tttatatcca cattttttca caaatttgtc ctgccttatg aaatatctgt aaaatattct
     2701 taaatgaaaa aaaatgatgt tcacttagat tgaaaacttt tctcagatgg accgataatt
     2761 gcattcatct tgtttttata agagaaggtg cctcaaggat tccctgttgg atttgtttaa
     2821 aaggactttt tatcttctgt gataaccttt gccatgtacc aggaactagg aaaacaagaa
     2881 acttgttcta aagagatctg caatgtgata agtcctcgcc gcatcagtct cgtgcgtcag
     2941 catttatgtt tacacgcatt gttgtctaag atacttcagc aagtcatgtt gtgcagttag
     3001 caaactttgt atgtcatttc ctcctacagg tgtcatgaag agttgacgta agacagattt
     3061 tacatttgca tgtgaatatc acatacatac tttggtagtc tttgatacaa actcatctgc
     3121 tcttcttttt caagcatttt gagacacaaa gttgtatgta aaggaatata ttaattagat
     3181 tttttttagt tagatttact ttaaaaagta aatccacttt aatgtgtaca aatgatagct
     3241 gtgaaactgt agagtttttc tctgtcaggc ttgggattca ctaagaactc caaaactagc
     3301 ctgaaggacc agccgggcaa aacatttttt aaatattcag aggccaaaat atgagcaaac
     3361 aaataaaaaa actcttaaaa gtcctacctc cttaaacagc cttcaaggca aagcccctgc
     3421 gcacaggcat ggctttggtc ttggtccctg gtctcttgga gcccccatag tactattgag
     3481 gtttactctt cactggcgtt gttctagcct tggggttcct aatatatttc agagtctctt
     3541 ggtttggtgt ggttttagtg atgaccacac cttctcctca cagtagagag gaaggagccc
     3601 tgtgcactgt gggtttgagg cctgcagaga gctcccagca ttttacttgg gcctatggaa
     3661 ttggaagcat ttcctggcct gtatctttca ggtaggagca cacaactcta acctgttttc
     3721 taagccagtc cccttgtaca acagagccca ggaagacagt ctcaaatgtg tgcttctctg
     3781 gagctcaatt ctatgcagtt gtgctaatgt ttcattaagt cactgtgtat ttttaagtac
     3841 taaaacattg aaatttgctt tatggaagat gaataaattt tttaaatact tggaatttta
     3901 tttctttgta aacttctaca gatcaggaca gacaataaaa gcagcttaaa taaaatacta
     3961 aaaacaaaaa gacaaaaccc acacaccagg atgctatctt taagtttttc tggatttgtc
     4021 tctattttag catccttagt atatgtcttt gtttaagaat tttacttcct ttgtaacttt
     4081 aggctgcagg atcttttggg cacaagtaat ttattgtgtg caaaagtgta gtttctctct
     4141 tcttttgact ctttcaagta ctaaggactt ttattagtag catattctta ttgcacagat
     4201 cttaaaattc atgttgattt gctgttaaga aggtggtggt gctgtgttcc tgatgaaaga
     4261 ctgacatatc aggaacatag ctgttgttag tttaaataaa tcatttaagt catttctcaa
     4321 cctaaaaaac ttcatcctgg tataagtatc aggtaaggaa atgaaggttt ttaaagtgaa
     4381 cttccttgca atatgcattc aggttttatt ctctggtact gtaaagaacc tgagtgactc
     4441 tcagtgggtc atggagccag tattctttat cctgactgtt tggatattaa aattccttta
     4501 tgttttatat ga
//
