LOCUS       NM_028138               1856 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus THUMP domain containing 2 (Thumpd2), mRNA.
ACCESSION   NM_028138 XM_898870 XM_918052
VERSION     NM_028138.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1856)
  AUTHORS   Saul,M.C., Stevenson,S.A., Zhao,C., Driessen,T.M., Eisinger,B.E.
            and Gammie,S.C.
  TITLE     Genomic variants in an inbred mouse model predict mania-like
            behaviors
  JOURNAL   PLoS One 13 (5), e0197624 (2018)
   PUBMED   29768498
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY133372.1, AK012806.1 and AC165966.3.
            
            On or before Jul 23, 2009 this sequence version replaced
            XM_918052.2, XM_898870.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK012806.1, SRR13422603.312334.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-18                BY133372.1         1-18
            19-1851             AK012806.1         2-1834
            1852-1856           AC165966.3         122251-122255       c
FEATURES             Location/Qualifiers
     source          1..1856
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 51.04 cM"
     gene            1..1856
                     /gene="Thumpd2"
                     /gene_synonym="2810025A12Rik"
                     /note="THUMP domain containing 2"
                     /db_xref="GeneID:72167"
                     /db_xref="MGI:MGI:1919417"
     exon            1..151
                     /gene="Thumpd2"
                     /gene_synonym="2810025A12Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             26..1612
                     /gene="Thumpd2"
                     /gene_synonym="2810025A12Rik"
                     /codon_start=1
                     /product="THUMP domain-containing protein 2"
                     /protein_id="NP_082414.1"
                     /db_xref="CCDS:CCDS50190.1"
                     /db_xref="GeneID:72167"
                     /db_xref="MGI:MGI:1919417"
                     /translation="MAVAQADPGSDPAGGARFFCTAGRGLEPFLMREVRARLEATQVE
                     YISGKVFFTTCSDLPSMKKLKSAERLFVLIKKQLPIAVSSLHKGKILNEMQRFVNDDP
                     GSWLEAISLWKKLLEHDPKREKVSQRDANPLKRKAGENETIIAKKLKVEEKQEVAKDH
                     GESQEDKLLQGSPEQGEAVTRTELQDHRLNSTTEKAADAQDQEDLTFRVSCRCTGNVR
                     KVITGQEAGRVIGLALMRQFGWKADLRNPNIEIFMHLSDAYSVVGIPLLRMPLASRTY
                     IQTAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYMGADMSDAQ
                     LLGACDNLKAAGLTDRIELLKSSVTDLPLPSQSTDVIISDIPFGKKFKLGKDIKSILQ
                     EMERVLRVGGAMVLLLSEDHHRHLTDCGGSSIPLTSKGHIAEPEMKTLSNPDRTGAPD
                     TASPSQRASSVQCLGRMRPCGSLVPVESFKVSLGKTDAFICKYKKAQASGLSSAECHE
                     PGAHTEMAAMQESPSLQDSL"
     exon            152..287
                     /gene="Thumpd2"
                     /gene_synonym="2810025A12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            288..697
                     /gene="Thumpd2"
                     /gene_synonym="2810025A12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            698..775
                     /gene="Thumpd2"
                     /gene_synonym="2810025A12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            776..828
                     /gene="Thumpd2"
                     /gene_synonym="2810025A12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            829..916
                     /gene="Thumpd2"
                     /gene_synonym="2810025A12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            917..988
                     /gene="Thumpd2"
                     /gene_synonym="2810025A12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            989..1103
                     /gene="Thumpd2"
                     /gene_synonym="2810025A12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..1212
                     /gene="Thumpd2"
                     /gene_synonym="2810025A12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1213..1856
                     /gene="Thumpd2"
                     /gene_synonym="2810025A12Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1825..1830
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Thumpd2"
                     /gene_synonym="2810025A12Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1853
                     /gene="Thumpd2"
                     /gene_synonym="2810025A12Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggtctcgggg tcgcgcctga gcgccatggc tgtagcccag gcagacccgg gttctgaccc
       61 cgctggcggc gcccggttct tctgcaccgc gggccgcggc ctggagccgt tcttgatgcg
      121 ggaggtgcgc gcgcggctgg aagccacgca ggttgaatac atttcaggaa aagtgttttt
      181 caccacctgt tcagatttgc cctctatgaa gaagttgaag tcagcggaaa gactgtttgt
      241 gttgattaag aagcagcttc ccattgcagt ctcttctctg cacaaaggaa aaatacttaa
      301 tgagatgcaa agatttgtaa atgatgatcc aggaagttgg ctggaggcca tttcactttg
      361 gaaaaaactt ctcgaacatg acccaaaaag agaaaaagtt tctcaaaggg atgctaaccc
      421 actaaaacgg aaagcgggag aaaatgaaac tatcattgct aagaaattaa aagtggagga
      481 gaaacaagag gttgccaagg atcacggaga aagccaggag gacaaacttc tgcaaggctc
      541 cccggagcaa ggagaagctg tcactagaac agagctgcaa gaccatagac tcaatagtac
      601 cacagagaag gcagctgatg ctcaggacca ggaggacttg accttcaggg tttcctgccg
      661 ctgcaccggg aatgtcagaa aggtcatcac gggacaggag gcaggaagag tgattggact
      721 tgctctcatg aggcagtttg gatggaaagc tgacttgagg aatccaaata tagagatctt
      781 catgcacctg agtgatgctt actccgtggt ggggattcct ctgctcagaa tgcccttggc
      841 cagcagaact tacatccaga cagctgggct gcggtcaacc atagcgtggg ccatggcgtc
      901 cattgcagaa attaaggctg gagcactggt tttagatccg atgtgtggcc ttgggactat
      961 acttgtggaa gcagccgaag agtggccaga tgtattttac atgggtgctg atatgagtga
     1021 cgcacagtta cttggcgcat gtgacaatct gaaggctgca ggccttacag acaggattga
     1081 gttacttaaa agctctgtta cagatttacc actgccatca caaagtacgg atgttattat
     1141 ttctgacatt ccatttggga aaaaatttaa gttaggaaaa gacatcaaaa gcattctaca
     1201 agaaatggaa agagtgctgc gtgttggtgg ggccatggtc ttgttgctca gtgaagatca
     1261 ccaccggcat cttacagact gtggaggcag cagcatcccc ctgacttcca agggtcacat
     1321 cgctgagcct gagatgaaga cgctttcgaa tcctgacaga actggtgcac ccgacacagc
     1381 atcaccttca caaagagcaa gtagcgtgca gtgtctgggc aggatgcggc cctgtggctc
     1441 attggtacca gtggaatcct tcaaagttag ccttggaaaa acagatgcat ttatatgtaa
     1501 gtataagaag gcacaagctt cgggactgtc ctcagctgaa tgccatgagc caggtgcaca
     1561 caccgagatg gcagccatgc aagaatcccc ttctctccag gattccttat agccccggag
     1621 ctccaagaac acagcctgta tgggtggatg tggccaaaaa cactcttgtc aaataaggct
     1681 tcctgccttg gactctccag tatccagttc ttgacagaga acagctggtt aagattttga
     1741 aaagacttga tgtaaaaaac tacttcttcc caaaagtcta actattagaa atgaggaaac
     1801 ctttatgggt aacttttttt atatattaaa cttgattttt gttttttaac ctataa
//
