LOCUS       XM_011244745            5978 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus thyroid hormone receptor beta (Thrb),
            transcript variant X18, mRNA.
ACCESSION   XM_011244745
VERSION     XM_011244745.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000080.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Oct 2, 2023 this sequence was replaced by
            NM_001424663.1.
            
            On Sep 21, 2020 this sequence version replaced XM_011244745.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5978
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="14"
     gene            1..5978
                     /gene="Thrb"
                     /gene_synonym="c-erbAbeta; Nr1a2; T3Rbeta; T3R[b]; Thrb1;
                     Thrb2"
                     /note="thyroid hormone receptor beta; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 1370 long SRA reads, 11 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 22 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:21834"
                     /db_xref="MGI:MGI:98743"
     CDS             262..1554
                     /gene="Thrb"
                     /gene_synonym="c-erbAbeta; Nr1a2; T3Rbeta; T3R[b]; Thrb1;
                     Thrb2"
                     /codon_start=1
                     /product="thyroid hormone receptor beta isoform X2"
                     /protein_id="XP_011243047.1"
                     /db_xref="GeneID:21834"
                     /db_xref="MGI:MGI:98743"
                     /translation="MSEACLHRKSHVERRGALKNEQTSPHLIQATWTSSIFHLDPDDV
                     NDQSISSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRR
                     TIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKL
                     IEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPED
                     IGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKG
                     CCMEIMSLRAAVRYDPDSETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNL
                     DDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLM
                     KVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED"
ORIGIN      
        1 ggcgggatta actttgcatg gctaatacga gcaccagagc tgaggccacc ggctgctcgg
       61 ccgcagctcg ccagcacgcc gccttggggc gccacctcca ggctccagcg ctctgatccg
      121 tgttttccct ctcgtccatc agaggacctg catggtacta agttccgcat atgacttaat
      181 gaataagaag aaaatggcct tccagcctgg gacaaacaga agccccgtcc agaccgaggc
      241 caggactgga agctggtagg aatgtctgaa gcctgcctgc acaggaagag ccacgtggag
      301 aggcgtggtg cactgaagaa tgagcagact tccccacacc ttatccaggc cacttggaca
      361 agctctatat tccacctgga tcctgacgat gtgaacgatc agagcatctc aagtgcccag
      421 actttccaga ctgaagagaa gaaatgtaaa gggtatatcc ccagctattt agacaaagat
      481 gagctctgtg tagtgtgtgg ggacaaagcc acagggtacc actatcgctg catcacctgt
      541 gaaggctgca agggcttctt tagaagaacc attcagaaaa gtctccatcc atcttattcc
      601 tgtaaatatg aaggaaagtg catcatagac aaagtcaccc gcaaccagtg ccaggaatgt
      661 cgctttaaga aatgcatcta tgttggcatg gcaacagact tggtgctgga tgacagcaag
      721 aggctagcca agcggaagct tatagaggag aaccgtgaga agaggcggcg ggaagagcta
      781 cagaaatcaa ttgggcacaa gccagaaccc acggatgagg agtgggagct catcaagaca
      841 gtcactgagg cccacgtggc caccaatgcc cagggcagcc actggaagca gaagcggaaa
      901 ttcctgccag aagacattgg acaagcaccc atcgtgaatg ccccagaagg tggcaaggtt
      961 gacctggaag ccttcagtca ttttacaaaa atcatcacac cagcaattac cagagtggtg
     1021 gattttgcca aaaagttgcc catgttttgt gagctgccat gtgaagacca gatcatcctc
     1081 ctcaaaggct gctgcatgga gatcatgtcc cttcgagctg ctgtgcgcta tgacccagac
     1141 agcgagactc taactttgaa tggggaaatg gcagtgacac gaggccagct gaaaaatggg
     1201 ggccttgggg tggtttcaga tgccatcttt gacctgggca tgtctctgtc atctttcaac
     1261 ctggatgaca ctgaagtcgc cctgcttcag gccgtcctgc taatgtcttc agatcgccca
     1321 gggctagcct gtgttgagag aatagagaaa taccaagaca gtttcctgtt ggcctttgaa
     1381 cactatatca attaccggaa gcaccatgtg acacactttt ggcccaaact cctgatgaag
     1441 gtgacagacc tgcggatgat tggagcttgc catgccagcc gcttcctcca catgaaggtg
     1501 gagtgcccca ctgagctctt cccgcctctg ttcttagaag tatttgagga ctaaatttac
     1561 tggacaagtt cttgtcattc ctgcagcacg actgggtgtc attgcattcc acctgtagca
     1621 ttctgttgtt gtttcttcgt ttctctgtgt caagtgagat catcgatggt cagcagatca
     1681 ccaatggcat agacttggat gaaattgttc tttgaatgtg ggtctttgta accattgcat
     1741 tttgttctcc agtccttggt gtgaatgctt tgaagggctt acagcagtgc agtctgagtg
     1801 gggtacaatc attatttcac cagcacgaag tcatcaccag ctcccatctg tccctgggca
     1861 gactcaagca agccaaacag catttcagaa gactaaagaa gccttaaaac cgagaccaca
     1921 gtcatcttga tccaacatga tccattctga tgtgtgcaag gtgaagctgt agagcccagg
     1981 ccgcctcagg gtgagcatgg cttttatcac ggaaggggag aaggagcagt ttctactcag
     2041 gagctcatca ttgccagcac tcgtgttctc caagcagcct gacttggaat gtgcaggaat
     2101 atccatacca taacaaatca actttccttt ccatggcctt ttgtaacctt atgatttact
     2161 tcaagttgca caagagtatg acttgactgg tttgaggcca caaagaaagt cttttttttt
     2221 tttttttttt ttcagtatgc ccatagagct tgtaaatctt catcaatgtt aaagcatact
     2281 ttccaaaatg cgtgtggtgt tacctcaagc aggaaggcac ctttccacct tagattcaca
     2341 agccacaaag ctcgaatctg tttacatagt gcagtccctt ttcaatggcc tatgaagcag
     2401 tcctctgccc agcttagctc acaaaggtct tatccaggct gtgtctgttg agctgatgat
     2461 gttcccctgt agactgaatc ttccaatcag ggagacacat ggggaaattc caggcttgtt
     2521 tggaaaaatc cctggaaaag atcagtacag gaacaatcag attcaaagga aaaaaactac
     2581 tcatggtata ggctgtcaga ttagagggaa tgctctccct ggatcagcaa gcgctttact
     2641 tattcacaaa tatctcccag tcccatccca tcgctgtctc ccaatctcac ccttgtggct
     2701 acccacctcc ctagattctg aggcactaaa tagcttctct ctctctctct ctctctctct
     2761 ctctctctct ctctctctct ctctctctct ctcctaaatc ttctgtagct tacacaccat
     2821 taccctggca aatactcctc ataaaataca gcagaccatt catacctgct acccaactta
     2881 tccccaatga ccaagtagag tagatgtttc taagcaacaa gtagtgacaa cttacccaaa
     2941 aatgggcaaa gactgtacac atacaactga atgtactgac tcttcactga cttcgcagat
     3001 gtaaaatatt ctttgcctgc ctttcactgc cttagcctgg aaatgctggg aaaaaaaaca
     3061 agccatatca gcaagaatta cctaaaagca aaggaagtca ctgtgaaaag caaggaaact
     3121 caattctttc cactaggctt ggtggggcat ctttggatct ttggcctcgc tggaagtcgg
     3181 gctgcctgag ttctactttg tactctgcag cctgggtaat ttaggacctt acaatttcag
     3241 ttttcttacc tcctgggaaa tgagttgaac tccaaaaatc cttcttctct tccctattgt
     3301 ttgacttcca ggaaagagag gggatgtctt tgaaagatcc ttttgtattc aaatttgtag
     3361 cttcaaaaag gaatgtattt gggcaatcaa tttgagtgag aatgagaatt tgattcagag
     3421 gaaggcagaa tggccttaga ggcataaaac ttagaggcac agcactgaaa gtcccaagag
     3481 actgggaata accaaggaag caggaatggt ttgtcactaa aggatttagc ctgacttccc
     3541 agataaaaca tcgctgaaga gattaaatag aaggaagaag ccccattaga ttcatgttca
     3601 aacatgtcag aggtagcctg tacctggcct cctgcttcag gaacttcatt aaacatgtga
     3661 tccctatgtc agctcttctg gaagaccttc atccaaacaa taaaaacttt gctgtaagac
     3721 caattctcct tccaaaggga gagggggagg cagggaggcg agtcctgcac aggcatacaa
     3781 acttctggaa caccagaatt tctaaggaag tttcctgatt ctgacagttt tcaaagggaa
     3841 tcagaaaccc tggcactagt gcagggtttg acccagaatc attcagagtg ctgtaaggat
     3901 taagcattgg gcactagccc agtcttcaca acccagccag ccacagcaaa gtgaccctcc
     3961 ctctacagag gcccaccttt cagggacaga cccagctctg gcaatcatgt ttagggttga
     4021 atactccaca agccatgcga gcttcactct tctggtggga aggaaccaga atgatagtag
     4081 gtcaggacag ccaaagacac gcttttgaga aattcatttt atgaaactag attgtaaggg
     4141 atttcctctc aaattttttt cttctctttt aaaaaatcat tctcttctaa tcttgtccag
     4201 actttcaaat caagtgtgga catggtggca ggaaccttta cacctgctcc actgtgggga
     4261 gatattccag tcaagaaaac acactcatcc tgctgggatg ctcactgaca aatggaattt
     4321 atggacaaga aggctgtgca catgcagcaa aaatgtgcat gtgtacacat gtgcgtatat
     4381 ctgttcattg cctcaagtgt acttcgcact tcagtttaaa tgtgcagaac ttccagaaac
     4441 tggaaggaaa aaaaaaaaaa aaacttcttc atgattctgc tgaaaacacc acgtgctgcc
     4501 tctgagcttt ttctagtccc ttgagcctca gtcctcagtg atgcgcttat gtgatgaagc
     4561 ctcagcccag cgcatcccct gcctctttcc cagttcaatc ttggggaggg tccttctcac
     4621 agtgacctgc aggctggccc tgccaccttg gcctcctcac actcagttct ccccaagcca
     4681 gcatcccgac ctgctgagcc tcttcagagc atgtcattgt cagtaagacc tcttcattct
     4741 gtggaactca agcctatcca tgtcatattg accttttgct gcatgagtca taaattatca
     4801 aatcagtctt acggtttttg agatgtagcc agtgttttat aaggctaaac ctttctcatg
     4861 aacttaattt aagtgaataa ccaaactacc ggtccttctc caatgagaga tgacagacaa
     4921 ttgaatctct gccctttgca gtggcgatgg catcaggtcc taaaataagc ttataatttt
     4981 cctgttattt taataatatg gaaatattaa aataatgttt cttttgatag tgatagactg
     5041 atccatattt aaattttata gagaagaaat tttattgtac tgtgatatag atatttatta
     5101 tccaggtaag gacttgcccg gtgtgtattt tttacaattg aaacatttta ctttaatctc
     5161 taaaagaaaa aagactataa aacatataca tattaaaaaa aggctaggga gaaaaaaggt
     5221 ttggctttat caaagaattt ttactgtgtt gtatacatgt ttgcaaatga aaaatttaca
     5281 catttttagt gtttccacat taattagtgc cgccttcaag agcaatattg tgcagtaaac
     5341 actgtttgtg gctttctgtt gcccagctca aactgacccc atcttatgca caagacaatc
     5401 agatgttacg tctttcctct gaggacatag acaatactca acagagcaca atgtgaaaca
     5461 aagaacaaga ttgtaggcat gggctgtgct gctgatggag atgatcaggg tgcatgcgca
     5521 ctcacatggc cttgtaccac tgcctccttt tggttgttct ttgtgacgtt ggtatctttc
     5581 tcttgacatc aaatagccaa agtagttctc catgttttct tcagaaaaga ccattctttt
     5641 tcccataatg tgttcatgcc ctgagaatca gaaaaatgaa aacaaaaaca aaaaaagata
     5701 cggatggaat agagaggttt atagtcagtg gaagattggt attttgcaaa cagtgttaag
     5761 tgatattgct attgctagat tggtaatttt ttttcagcct aaaatcgttg aaatctgtga
     5821 tcaaatgttt taaactatcc agaaagaaaa tttgtatatt tgggaaaatg gatttttaca
     5881 tagcttttgt atgcggatat taaattgtaa ttatgaatat agtggacata ggtactcata
     5941 agcttaaatt ctaaaaaaga aaaagcttac aatagata
//
