LOCUS       XM_011244740            8176 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus thyroid hormone receptor beta (Thrb),
            transcript variant X7, mRNA.
ACCESSION   XM_011244740
VERSION     XM_011244740.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000080.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011244740.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8176
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="14"
     gene            1..8176
                     /gene="Thrb"
                     /gene_synonym="c-erbAbeta; Nr1a2; T3Rbeta; T3R[b]; Thrb1;
                     Thrb2"
                     /note="thyroid hormone receptor beta; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 1351 long SRA reads, 21 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:21834"
                     /db_xref="MGI:MGI:98743"
     CDS             360..1745
                     /gene="Thrb"
                     /gene_synonym="c-erbAbeta; Nr1a2; T3Rbeta; T3R[b]; Thrb1;
                     Thrb2"
                     /codon_start=1
                     /product="thyroid hormone receptor beta isoform X1"
                     /protein_id="XP_011243042.1"
                     /db_xref="GeneID:21834"
                     /db_xref="MGI:MGI:98743"
                     /translation="MTPNSMTENGLPAWDKQKPRPDRGQDWKLVGMSEACLHRKSHVE
                     RRGALKNEQTSPHLIQATWTSSIFHLDPDDVNDQSISSAQTFQTEEKKCKGYIPSYLD
                     KDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQ
                     CQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEPTDEE
                     WELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKII
                     TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM
                     AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERI
                     EKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL
                     FPPLFLEVFED"
ORIGIN      
        1 aagcagttct agtctgtcag aaagttctag tttgtttgtt tttgtaaagt ctggtgacat
       61 cgagttggca ttaatcattt cctttctgca gtctgtgagc ttccaaacag agggagtgtc
      121 caaactgcac tctatctggt cctgcccact gccgagctct tccaagtttg tagagggtgg
      181 actttgtgca tatgtgcttt gctggactag tgcacccttt caagtaactg ctcccaaaga
      241 cgatccgtgt tttccctctc gtccatcaga ggacctgcat ggtactaagt tccgcatatg
      301 acttaatgaa taagaaggga atgccagtac agaagatgac ccagcatgac tactaaccta
      361 tgactcctaa cagtatgaca gaaaatggcc ttccagcctg ggacaaacag aagccccgtc
      421 cagaccgagg ccaggactgg aagctggtag gaatgtctga agcctgcctg cacaggaaga
      481 gccacgtgga gaggcgtggt gcactgaaga atgagcagac ttccccacac cttatccagg
      541 ccacttggac aagctctata ttccacctgg atcctgacga tgtgaacgat cagagcatct
      601 caagtgccca gactttccag actgaagaga agaaatgtaa agggtatatc cccagctatt
      661 tagacaaaga tgagctctgt gtagtgtgtg gggacaaagc cacagggtac cactatcgct
      721 gcatcacctg tgaaggctgc aagggcttct ttagaagaac cattcagaaa agtctccatc
      781 catcttattc ctgtaaatat gaaggaaagt gcatcataga caaagtcacc cgcaaccagt
      841 gccaggaatg tcgctttaag aaatgcatct atgttggcat ggcaacagac ttggtgctgg
      901 atgacagcaa gaggctagcc aagcggaagc ttatagagga gaaccgtgag aagaggcggc
      961 gggaagagct acagaaatca attgggcaca agccagaacc cacggatgag gagtgggagc
     1021 tcatcaagac agtcactgag gcccacgtgg ccaccaatgc ccagggcagc cactggaagc
     1081 agaagcggaa attcctgcca gaagacattg gacaagcacc catcgtgaat gccccagaag
     1141 gtggcaaggt tgacctggaa gccttcagtc attttacaaa aatcatcaca ccagcaatta
     1201 ccagagtggt ggattttgcc aaaaagttgc ccatgttttg tgagctgcca tgtgaagacc
     1261 agatcatcct cctcaaaggc tgctgcatgg agatcatgtc ccttcgagct gctgtgcgct
     1321 atgacccaga cagcgagact ctaactttga atggggaaat ggcagtgaca cgaggccagc
     1381 tgaaaaatgg gggccttggg gtggtttcag atgccatctt tgacctgggc atgtctctgt
     1441 catctttcaa cctggatgac actgaagtcg ccctgcttca ggccgtcctg ctaatgtctt
     1501 cagatcgccc agggctagcc tgtgttgaga gaatagagaa ataccaagac agtttcctgt
     1561 tggcctttga acactatatc aattaccgga agcaccatgt gacacacttt tggcccaaac
     1621 tcctgatgaa ggtgacagac ctgcggatga ttggagcttg ccatgccagc cgcttcctcc
     1681 acatgaaggt ggagtgcccc actgagctct tcccgcctct gttcttagaa gtatttgagg
     1741 actaaattta ctggacaagt tcttgtcatt cctgcagcac gactgggtgt cattgcattc
     1801 cacctgtagc attctgttgt tgtttcttcg tttctctgtg tcaagtgaga tcatcgatgg
     1861 tcagcagatc accaatggca tagacttgga tgaaattgtt ctttgaatgt gggtctttgt
     1921 aaccattgca ttttgttctc cagtccttgg tgtgaatgct ttgaagggct tacagcagtg
     1981 cagtctgagt ggggtacaat cattatttca ccagcacgaa gtcatcacca gctcccatct
     2041 gtccctgggc agactcaagc aagccaaaca gcatttcaga agactaaaga agccttaaaa
     2101 ccgagaccac agtcatcttg atccaacatg atccattctg atgtgtgcaa ggtgaagctg
     2161 tagagcccag gccgcctcag ggtgagcatg gcttttatca cggaagggga gaaggagcag
     2221 tttctactca ggagctcatc attgccagca ctcgtgttct ccaagcagcc tgacttggaa
     2281 tgtgcaggaa tatccatacc ataacaaatc aactttcctt tccatggcct tttgtaacct
     2341 tatgatttac ttcaagttgc acaagagtat gacttgactg gtttgaggcc acaaagaaag
     2401 tctttttttt tttttttttt tttcagtatg cccatagagc ttgtaaatct tcatcaatgt
     2461 taaagcatac tttccaaaat gcgtgtggtg ttacctcaag caggaaggca cctttccacc
     2521 ttagattcac aagccacaaa gctcgaatct gtttacatag tgcagtccct tttcaatggc
     2581 ctatgaagca gtcctctgcc cagcttagct cacaaaggtc ttatccaggc tgtgtctgtt
     2641 gagctgatga tgttcccctg tagactgaat cttccaatca gggagacaca tggggaaatt
     2701 ccaggcttgt ttggaaaaat ccctggaaaa gatcagtaca ggaacaatca gattcaaagg
     2761 aaaaaaacta ctcatggtat aggctgtcag attagaggga atgctctccc tggatcagca
     2821 agcgctttac ttattcacaa atatctccca gtcccatccc atcgctgtct cccaatctca
     2881 cccttgtggc tacccacctc cctagattct gaggcactaa atagcttctc tctctctctc
     2941 tctctctctc tctctctctc tctctctctc tctctctctc tctcctaaat cttctgtagc
     3001 ttacacacca ttaccctggc aaatactcct cataaaatac agcagaccat tcatacctgc
     3061 tacccaactt atccccaatg accaagtaga gtagatgttt ctaagcaaca agtagtgaca
     3121 acttacccaa aaatgggcaa agactgtaca catacaactg aatgtactga ctcttcactg
     3181 acttcgcaga tgtaaaatat tctttgcctg cctttcactg ccttagcctg gaaatgctgg
     3241 gaaaaaaaac aagccatatc agcaagaatt acctaaaagc aaaggaagtc actgtgaaaa
     3301 gcaaggaaac tcaattcttt ccactaggct tggtggggca tctttggatc tttggcctcg
     3361 ctggaagtcg ggctgcctga gttctacttt gtactctgca gcctgggtaa tttaggacct
     3421 tacaatttca gttttcttac ctcctgggaa atgagttgaa ctccaaaaat ccttcttctc
     3481 ttccctattg tttgacttcc aggaaagaga ggggatgtct ttgaaagatc cttttgtatt
     3541 caaatttgta gcttcaaaaa ggaatgtatt tgggcaatca atttgagtga gaatgagaat
     3601 ttgattcaga ggaaggcaga atggccttag aggcataaaa cttagaggca cagcactgaa
     3661 agtcccaaga gactgggaat aaccaaggaa gcaggaatgg tttgtcacta aaggatttag
     3721 cctgacttcc cagataaaac atcgctgaag agattaaata gaaggaagaa gccccattag
     3781 attcatgttc aaacatgtca gaggtagcct gtacctggcc tcctgcttca ggaacttcat
     3841 taaacatgtg atccctatgt cagctcttct ggaagacctt catccaaaca ataaaaactt
     3901 tgctgtaaga ccaattctcc ttccaaaggg agagggggag gcagggaggc gagtcctgca
     3961 caggcataca aacttctgga acaccagaat ttctaaggaa gtttcctgat tctgacagtt
     4021 ttcaaaggga atcagaaacc ctggcactag tgcagggttt gacccagaat cattcagagt
     4081 gctgtaagga ttaagcattg ggcactagcc cagtcttcac aacccagcca gccacagcaa
     4141 agtgaccctc cctctacaga ggcccacctt tcagggacag acccagctct ggcaatcatg
     4201 tttagggttg aatactccac aagccatgcg agcttcactc ttctggtggg aaggaaccag
     4261 aatgatagta ggtcaggaca gccaaagaca cgcttttgag aaattcattt tatgaaacta
     4321 gattgtaagg gatttcctct caaatttttt tcttctcttt taaaaaatca ttctcttcta
     4381 atcttgtcca gactttcaaa tcaagtgtgg acatggtggc aggaaccttt acacctgctc
     4441 cactgtgggg agatattcca gtcaagaaaa cacactcatc ctgctgggat gctcactgac
     4501 aaatggaatt tatggacaag aaggctgtgc acatgcagca aaaatgtgca tgtgtacaca
     4561 tgtgcgtata tctgttcatt gcctcaagtg tacttcgcac ttcagtttaa atgtgcagaa
     4621 cttccagaaa ctggaaggaa aaaaaaaaaa aaaacttctt catgattctg ctgaaaacac
     4681 cacgtgctgc ctctgagctt tttctagtcc cttgagcctc agtcctcagt gatgcgctta
     4741 tgtgatgaag cctcagccca gcgcatcccc tgcctctttc ccagttcaat cttggggagg
     4801 gtccttctca cagtgacctg caggctggcc ctgccacctt ggcctcctca cactcagttc
     4861 tccccaagcc agcatcccga cctgctgagc ctcttcagag catgtcattg tcagtaagac
     4921 ctcttcattc tgtggaactc aagcctatcc atgtcatatt gaccttttgc tgcatgagtc
     4981 ataaattatc aaatcagtct tacggttttt gagatgtagc cagtgtttta taaggctaaa
     5041 cctttctcat gaacttaatt taagtgaata accaaactac cggtccttct ccaatgagag
     5101 atgacagaca attgaatctc tgccctttgc agtggcgatg gcatcaggtc ctaaaataag
     5161 cttataattt tcctgttatt ttaataatat ggaaatatta aaataatgtt tcttttgata
     5221 gtgatagact gatccatatt taaattttat agagaagaaa ttttattgta ctgtgatata
     5281 gatatttatt atccaggtaa ggacttgccc ggtgtgtatt ttttacaatt gaaacatttt
     5341 actttaatct ctaaaagaaa aaagactata aaacatatac atattaaaaa aaggctaggg
     5401 agaaaaaagg tttggcttta tcaaagaatt tttactgtgt tgtatacatg tttgcaaatg
     5461 aaaaatttac acatttttag tgtttccaca ttaattagtg ccgccttcaa gagcaatatt
     5521 gtgcagtaaa cactgtttgt ggctttctgt tgcccagctc aaactgaccc catcttatgc
     5581 acaagacaat cagatgttac gtctttcctc tgaggacata gacaatactc aacagagcac
     5641 aatgtgaaac aaagaacaag attgtaggca tgggctgtgc tgctgatgga gatgatcagg
     5701 gtgcatgcgc actcacatgg ccttgtacca ctgcctcctt ttggttgttc tttgtgacgt
     5761 tggtatcttt ctcttgacat caaatagcca aagtagttct ccatgttttc ttcagaaaag
     5821 accattcttt ttcccataat gtgttcatgc cctgagaatc agaaaaatga aaacaaaaac
     5881 aaaaaaagat acggatggaa tagagaggtt tatagtcagt ggaagattgg tattttgcaa
     5941 acagtgttaa gtgatattgc tattgctaga ttggtaattt tttttcagcc taaaatcgtt
     6001 gaaatctgtg atcaaatgtt ttaaactatc cagaaagaaa atttgtatat ttgggaaaat
     6061 ggatttttac atagcttttg tatgcggata ttaaattgta attatgaata tagtggacat
     6121 aggtactcat aagcttaaat tctaaaaaag aaaaagctta caatagatat atttgcctgt
     6181 ctctttcttt aaatatttct ggatataagg ggctgcctcc cacctcaaca ctgaggcagg
     6241 gaaggaatta caaatacaag gcacatctac taagatgaac gagttcaact ttggggagca
     6301 tatggaaaga agggagaaac acagacagac aaactgactg acaaacagac gtcatcaaaa
     6361 catccaacag aaatctaagg caactccact aaagtagggt gttggggttc tcaagaaaag
     6421 agaacacaga acttggagca gaggggagtg tcccttagga taagaacaat tagcgtcata
     6481 aagattacat cgtcaaatca gggcttgcct accagaaaaa ccaatgggga aagttgaggc
     6541 agtcaactag agtttttggg agttctcttc aaggctgaac tcccaacagg tgagctcctg
     6601 tcaggggata agtagctaag tcctttgatc ttgaaaagat accatgattt atctctcagc
     6661 tatgcgtaag gacacaggat ttactttaac aattcactct cctgttctct aggacatgat
     6721 attttcattc gtaggctatt ttgcaatcat tgtcacagag ttgggggtag gaggtggaaa
     6781 gggagggtgg gcagaccaac cccagacaag aaaccttgga ggacactttg atttaagcat
     6841 gcttgggcct gaaaggaggg gttaccccgc agaagagaga gccaatcaaa ggtcattttc
     6901 cctgaatatt tgtatcacac ttcataggaa tcaatggaaa tcttctccca tgtgaaactt
     6961 cacttaatcc aaggactttg ggtgatgaag agcacaataa aatgaaggat gttttcttct
     7021 ctcaggctgc taacaaccat ttcctttgca ttttcttgca tacaatgagt tgccctgagg
     7081 aaggcagatg tgtgtagaaa aggaaaaaac ttcaaaacag acttaggata aagtagtctg
     7141 ttctagtgct cttggatgga gtgagataag aaccactctc agtctgactc caagtgatac
     7201 agatgctgag tgccttcctc acaccagatg cacgcaatcc tgtgtgttct aggggcttgt
     7261 gactcagtgg ctattctgag ctcagaagag atggcgggtt tgtttttgac aggacttttg
     7321 taataatgac acatccaaca tggatgcctg catcccctga gagacattta ctggtaagtg
     7381 agctactaat cagactttcc aggaagttcg gatctccctg catgttaaca tcactcacta
     7441 gtcactgggt acttgagagt cccaatggct cccagcccca gatcttcagt gtgatgttag
     7501 gttatgtgat tctggccagc cttgtatgaa cattactctg tcctaggaat cttgcttcac
     7561 ccttcattct acctcaattt ctccaaagca catgagagaa catgaggttt ctgatgacag
     7621 gataatgcaa tccactgtgg tgatgctcac tgcttaccat ccaaaactgt tcacccaccc
     7681 cactgcaaaa aacccacatc caccaaaaga aaggctacct caaccctcaa tagactagat
     7741 ccactgcaaa tgtactcacg aggcttaata tgagtggtga tttctcctgg tggcatttat
     7801 gtattgtccc aatggcttct agagggctaa cccaaaggta tttttgtcct tttgcttgag
     7861 acagtctcac tgtatagcac aagctggcta accttgaatt cacagaaaac tgacatcctc
     7921 tccccccaac tgctggtatt aaaggcatat accaccacac actaaggtat tttgtcttgt
     7981 aagctcttgg gagtcaaatt taggaaaagc tatgttgtat gatagaatga gaatttatag
     8041 cagtgggagt tgggcatcct gaaaggggga gctgagaaaa tacgaagatg gaagtatttg
     8101 ccttctaaga ggaaacaaca tgctatacca ctctcaactt tatcaacttt aaataataaa
     8161 attattggca aatgaa
//
