LOCUS       XM_006517972            8002 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus thyroid hormone receptor beta (Thrb),
            transcript variant X15, mRNA.
ACCESSION   XM_006517972
VERSION     XM_006517972.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000080.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006517972.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8002
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="14"
     gene            1..8002
                     /gene="Thrb"
                     /gene_synonym="c-erbAbeta; Nr1a2; T3Rbeta; T3R[b]; Thrb1;
                     Thrb2"
                     /note="thyroid hormone receptor beta; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 1351 long SRA reads, 21 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:21834"
                     /db_xref="MGI:MGI:98743"
     CDS             186..1571
                     /gene="Thrb"
                     /gene_synonym="c-erbAbeta; Nr1a2; T3Rbeta; T3R[b]; Thrb1;
                     Thrb2"
                     /codon_start=1
                     /product="thyroid hormone receptor beta isoform X1"
                     /protein_id="XP_006518035.1"
                     /db_xref="GeneID:21834"
                     /db_xref="MGI:MGI:98743"
                     /translation="MTPNSMTENGLPAWDKQKPRPDRGQDWKLVGMSEACLHRKSHVE
                     RRGALKNEQTSPHLIQATWTSSIFHLDPDDVNDQSISSAQTFQTEEKKCKGYIPSYLD
                     KDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQ
                     CQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEPTDEE
                     WELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKII
                     TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM
                     AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERI
                     EKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL
                     FPPLFLEVFED"
ORIGIN      
        1 cacagcatca gtgagttgga agaagactca cagggctaag ggccaggcag catcctggtt
       61 cccaactgta gacagatggg cttctgtaat gcacgggaca atgagccatc agtacacggt
      121 gaatgatgtc cttggagctg gagggaatgc cagtacagaa gatgacccag catgactact
      181 aacctatgac tcctaacagt atgacagaaa atggccttcc agcctgggac aaacagaagc
      241 cccgtccaga ccgaggccag gactggaagc tggtaggaat gtctgaagcc tgcctgcaca
      301 ggaagagcca cgtggagagg cgtggtgcac tgaagaatga gcagacttcc ccacacctta
      361 tccaggccac ttggacaagc tctatattcc acctggatcc tgacgatgtg aacgatcaga
      421 gcatctcaag tgcccagact ttccagactg aagagaagaa atgtaaaggg tatatcccca
      481 gctatttaga caaagatgag ctctgtgtag tgtgtgggga caaagccaca gggtaccact
      541 atcgctgcat cacctgtgaa ggctgcaagg gcttctttag aagaaccatt cagaaaagtc
      601 tccatccatc ttattcctgt aaatatgaag gaaagtgcat catagacaaa gtcacccgca
      661 accagtgcca ggaatgtcgc tttaagaaat gcatctatgt tggcatggca acagacttgg
      721 tgctggatga cagcaagagg ctagccaagc ggaagcttat agaggagaac cgtgagaaga
      781 ggcggcggga agagctacag aaatcaattg ggcacaagcc agaacccacg gatgaggagt
      841 gggagctcat caagacagtc actgaggccc acgtggccac caatgcccag ggcagccact
      901 ggaagcagaa gcggaaattc ctgccagaag acattggaca agcacccatc gtgaatgccc
      961 cagaaggtgg caaggttgac ctggaagcct tcagtcattt tacaaaaatc atcacaccag
     1021 caattaccag agtggtggat tttgccaaaa agttgcccat gttttgtgag ctgccatgtg
     1081 aagaccagat catcctcctc aaaggctgct gcatggagat catgtccctt cgagctgctg
     1141 tgcgctatga cccagacagc gagactctaa ctttgaatgg ggaaatggca gtgacacgag
     1201 gccagctgaa aaatgggggc cttggggtgg tttcagatgc catctttgac ctgggcatgt
     1261 ctctgtcatc tttcaacctg gatgacactg aagtcgccct gcttcaggcc gtcctgctaa
     1321 tgtcttcaga tcgcccaggg ctagcctgtg ttgagagaat agagaaatac caagacagtt
     1381 tcctgttggc ctttgaacac tatatcaatt accggaagca ccatgtgaca cacttttggc
     1441 ccaaactcct gatgaaggtg acagacctgc ggatgattgg agcttgccat gccagccgct
     1501 tcctccacat gaaggtggag tgccccactg agctcttccc gcctctgttc ttagaagtat
     1561 ttgaggacta aatttactgg acaagttctt gtcattcctg cagcacgact gggtgtcatt
     1621 gcattccacc tgtagcattc tgttgttgtt tcttcgtttc tctgtgtcaa gtgagatcat
     1681 cgatggtcag cagatcacca atggcataga cttggatgaa attgttcttt gaatgtgggt
     1741 ctttgtaacc attgcatttt gttctccagt ccttggtgtg aatgctttga agggcttaca
     1801 gcagtgcagt ctgagtgggg tacaatcatt atttcaccag cacgaagtca tcaccagctc
     1861 ccatctgtcc ctgggcagac tcaagcaagc caaacagcat ttcagaagac taaagaagcc
     1921 ttaaaaccga gaccacagtc atcttgatcc aacatgatcc attctgatgt gtgcaaggtg
     1981 aagctgtaga gcccaggccg cctcagggtg agcatggctt ttatcacgga aggggagaag
     2041 gagcagtttc tactcaggag ctcatcattg ccagcactcg tgttctccaa gcagcctgac
     2101 ttggaatgtg caggaatatc cataccataa caaatcaact ttcctttcca tggccttttg
     2161 taaccttatg atttacttca agttgcacaa gagtatgact tgactggttt gaggccacaa
     2221 agaaagtctt tttttttttt tttttttttc agtatgccca tagagcttgt aaatcttcat
     2281 caatgttaaa gcatactttc caaaatgcgt gtggtgttac ctcaagcagg aaggcacctt
     2341 tccaccttag attcacaagc cacaaagctc gaatctgttt acatagtgca gtcccttttc
     2401 aatggcctat gaagcagtcc tctgcccagc ttagctcaca aaggtcttat ccaggctgtg
     2461 tctgttgagc tgatgatgtt cccctgtaga ctgaatcttc caatcaggga gacacatggg
     2521 gaaattccag gcttgtttgg aaaaatccct ggaaaagatc agtacaggaa caatcagatt
     2581 caaaggaaaa aaactactca tggtataggc tgtcagatta gagggaatgc tctccctgga
     2641 tcagcaagcg ctttacttat tcacaaatat ctcccagtcc catcccatcg ctgtctccca
     2701 atctcaccct tgtggctacc cacctcccta gattctgagg cactaaatag cttctctctc
     2761 tctctctctc tctctctctc tctctctctc tctctctctc tctctctctc ctaaatcttc
     2821 tgtagcttac acaccattac cctggcaaat actcctcata aaatacagca gaccattcat
     2881 acctgctacc caacttatcc ccaatgacca agtagagtag atgtttctaa gcaacaagta
     2941 gtgacaactt acccaaaaat gggcaaagac tgtacacata caactgaatg tactgactct
     3001 tcactgactt cgcagatgta aaatattctt tgcctgcctt tcactgcctt agcctggaaa
     3061 tgctgggaaa aaaaacaagc catatcagca agaattacct aaaagcaaag gaagtcactg
     3121 tgaaaagcaa ggaaactcaa ttctttccac taggcttggt ggggcatctt tggatctttg
     3181 gcctcgctgg aagtcgggct gcctgagttc tactttgtac tctgcagcct gggtaattta
     3241 ggaccttaca atttcagttt tcttacctcc tgggaaatga gttgaactcc aaaaatcctt
     3301 cttctcttcc ctattgtttg acttccagga aagagagggg atgtctttga aagatccttt
     3361 tgtattcaaa tttgtagctt caaaaaggaa tgtatttggg caatcaattt gagtgagaat
     3421 gagaatttga ttcagaggaa ggcagaatgg ccttagaggc ataaaactta gaggcacagc
     3481 actgaaagtc ccaagagact gggaataacc aaggaagcag gaatggtttg tcactaaagg
     3541 atttagcctg acttcccaga taaaacatcg ctgaagagat taaatagaag gaagaagccc
     3601 cattagattc atgttcaaac atgtcagagg tagcctgtac ctggcctcct gcttcaggaa
     3661 cttcattaaa catgtgatcc ctatgtcagc tcttctggaa gaccttcatc caaacaataa
     3721 aaactttgct gtaagaccaa ttctccttcc aaagggagag ggggaggcag ggaggcgagt
     3781 cctgcacagg catacaaact tctggaacac cagaatttct aaggaagttt cctgattctg
     3841 acagttttca aagggaatca gaaaccctgg cactagtgca gggtttgacc cagaatcatt
     3901 cagagtgctg taaggattaa gcattgggca ctagcccagt cttcacaacc cagccagcca
     3961 cagcaaagtg accctccctc tacagaggcc cacctttcag ggacagaccc agctctggca
     4021 atcatgttta gggttgaata ctccacaagc catgcgagct tcactcttct ggtgggaagg
     4081 aaccagaatg atagtaggtc aggacagcca aagacacgct tttgagaaat tcattttatg
     4141 aaactagatt gtaagggatt tcctctcaaa tttttttctt ctcttttaaa aaatcattct
     4201 cttctaatct tgtccagact ttcaaatcaa gtgtggacat ggtggcagga acctttacac
     4261 ctgctccact gtggggagat attccagtca agaaaacaca ctcatcctgc tgggatgctc
     4321 actgacaaat ggaatttatg gacaagaagg ctgtgcacat gcagcaaaaa tgtgcatgtg
     4381 tacacatgtg cgtatatctg ttcattgcct caagtgtact tcgcacttca gtttaaatgt
     4441 gcagaacttc cagaaactgg aaggaaaaaa aaaaaaaaaa cttcttcatg attctgctga
     4501 aaacaccacg tgctgcctct gagctttttc tagtcccttg agcctcagtc ctcagtgatg
     4561 cgcttatgtg atgaagcctc agcccagcgc atcccctgcc tctttcccag ttcaatcttg
     4621 gggagggtcc ttctcacagt gacctgcagg ctggccctgc caccttggcc tcctcacact
     4681 cagttctccc caagccagca tcccgacctg ctgagcctct tcagagcatg tcattgtcag
     4741 taagacctct tcattctgtg gaactcaagc ctatccatgt catattgacc ttttgctgca
     4801 tgagtcataa attatcaaat cagtcttacg gtttttgaga tgtagccagt gttttataag
     4861 gctaaacctt tctcatgaac ttaatttaag tgaataacca aactaccggt ccttctccaa
     4921 tgagagatga cagacaattg aatctctgcc ctttgcagtg gcgatggcat caggtcctaa
     4981 aataagctta taattttcct gttattttaa taatatggaa atattaaaat aatgtttctt
     5041 ttgatagtga tagactgatc catatttaaa ttttatagag aagaaatttt attgtactgt
     5101 gatatagata tttattatcc aggtaaggac ttgcccggtg tgtatttttt acaattgaaa
     5161 cattttactt taatctctaa aagaaaaaag actataaaac atatacatat taaaaaaagg
     5221 ctagggagaa aaaaggtttg gctttatcaa agaattttta ctgtgttgta tacatgtttg
     5281 caaatgaaaa atttacacat ttttagtgtt tccacattaa ttagtgccgc cttcaagagc
     5341 aatattgtgc agtaaacact gtttgtggct ttctgttgcc cagctcaaac tgaccccatc
     5401 ttatgcacaa gacaatcaga tgttacgtct ttcctctgag gacatagaca atactcaaca
     5461 gagcacaatg tgaaacaaag aacaagattg taggcatggg ctgtgctgct gatggagatg
     5521 atcagggtgc atgcgcactc acatggcctt gtaccactgc ctccttttgg ttgttctttg
     5581 tgacgttggt atctttctct tgacatcaaa tagccaaagt agttctccat gttttcttca
     5641 gaaaagacca ttctttttcc cataatgtgt tcatgccctg agaatcagaa aaatgaaaac
     5701 aaaaacaaaa aaagatacgg atggaataga gaggtttata gtcagtggaa gattggtatt
     5761 ttgcaaacag tgttaagtga tattgctatt gctagattgg taattttttt tcagcctaaa
     5821 atcgttgaaa tctgtgatca aatgttttaa actatccaga aagaaaattt gtatatttgg
     5881 gaaaatggat ttttacatag cttttgtatg cggatattaa attgtaatta tgaatatagt
     5941 ggacataggt actcataagc ttaaattcta aaaaagaaaa agcttacaat agatatattt
     6001 gcctgtctct ttctttaaat atttctggat ataaggggct gcctcccacc tcaacactga
     6061 ggcagggaag gaattacaaa tacaaggcac atctactaag atgaacgagt tcaactttgg
     6121 ggagcatatg gaaagaaggg agaaacacag acagacaaac tgactgacaa acagacgtca
     6181 tcaaaacatc caacagaaat ctaaggcaac tccactaaag tagggtgttg gggttctcaa
     6241 gaaaagagaa cacagaactt ggagcagagg ggagtgtccc ttaggataag aacaattagc
     6301 gtcataaaga ttacatcgtc aaatcagggc ttgcctacca gaaaaaccaa tggggaaagt
     6361 tgaggcagtc aactagagtt tttgggagtt ctcttcaagg ctgaactccc aacaggtgag
     6421 ctcctgtcag gggataagta gctaagtcct ttgatcttga aaagatacca tgatttatct
     6481 ctcagctatg cgtaaggaca caggatttac tttaacaatt cactctcctg ttctctagga
     6541 catgatattt tcattcgtag gctattttgc aatcattgtc acagagttgg gggtaggagg
     6601 tggaaaggga gggtgggcag accaacccca gacaagaaac cttggaggac actttgattt
     6661 aagcatgctt gggcctgaaa ggaggggtta ccccgcagaa gagagagcca atcaaaggtc
     6721 attttccctg aatatttgta tcacacttca taggaatcaa tggaaatctt ctcccatgtg
     6781 aaacttcact taatccaagg actttgggtg atgaagagca caataaaatg aaggatgttt
     6841 tcttctctca ggctgctaac aaccatttcc tttgcatttt cttgcataca atgagttgcc
     6901 ctgaggaagg cagatgtgtg tagaaaagga aaaaacttca aaacagactt aggataaagt
     6961 agtctgttct agtgctcttg gatggagtga gataagaacc actctcagtc tgactccaag
     7021 tgatacagat gctgagtgcc ttcctcacac cagatgcacg caatcctgtg tgttctaggg
     7081 gcttgtgact cagtggctat tctgagctca gaagagatgg cgggtttgtt tttgacagga
     7141 cttttgtaat aatgacacat ccaacatgga tgcctgcatc ccctgagaga catttactgg
     7201 taagtgagct actaatcaga ctttccagga agttcggatc tccctgcatg ttaacatcac
     7261 tcactagtca ctgggtactt gagagtccca atggctccca gccccagatc ttcagtgtga
     7321 tgttaggtta tgtgattctg gccagccttg tatgaacatt actctgtcct aggaatcttg
     7381 cttcaccctt cattctacct caatttctcc aaagcacatg agagaacatg aggtttctga
     7441 tgacaggata atgcaatcca ctgtggtgat gctcactgct taccatccaa aactgttcac
     7501 ccaccccact gcaaaaaacc cacatccacc aaaagaaagg ctacctcaac cctcaataga
     7561 ctagatccac tgcaaatgta ctcacgaggc ttaatatgag tggtgatttc tcctggtggc
     7621 atttatgtat tgtcccaatg gcttctagag ggctaaccca aaggtatttt tgtccttttg
     7681 cttgagacag tctcactgta tagcacaagc tggctaacct tgaattcaca gaaaactgac
     7741 atcctctccc cccaactgct ggtattaaag gcatatacca ccacacacta aggtattttg
     7801 tcttgtaagc tcttgggagt caaatttagg aaaagctatg ttgtatgata gaatgagaat
     7861 ttatagcagt gggagttggg catcctgaaa gggggagctg agaaaatacg aagatggaag
     7921 tatttgcctt ctaagaggaa acaacatgct ataccactct caactttatc aactttaaat
     7981 aataaaatta ttggcaaatg aa
//
