LOCUS       XM_006517967            5987 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus thyroid hormone receptor beta (Thrb),
            transcript variant X9, mRNA.
ACCESSION   XM_006517967
VERSION     XM_006517967.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000080.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006517967.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5987
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="14"
     gene            1..5987
                     /gene="Thrb"
                     /gene_synonym="c-erbAbeta; Nr1a2; T3Rbeta; T3R[b]; Thrb1;
                     Thrb2"
                     /note="thyroid hormone receptor beta; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 8
                     ESTs, 1351 long SRA reads, 21 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:21834"
                     /db_xref="MGI:MGI:98743"
     CDS             178..1563
                     /gene="Thrb"
                     /gene_synonym="c-erbAbeta; Nr1a2; T3Rbeta; T3R[b]; Thrb1;
                     Thrb2"
                     /codon_start=1
                     /product="thyroid hormone receptor beta isoform X1"
                     /protein_id="XP_006518030.1"
                     /db_xref="GeneID:21834"
                     /db_xref="MGI:MGI:98743"
                     /translation="MTPNSMTENGLPAWDKQKPRPDRGQDWKLVGMSEACLHRKSHVE
                     RRGALKNEQTSPHLIQATWTSSIFHLDPDDVNDQSISSAQTFQTEEKKCKGYIPSYLD
                     KDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQ
                     CQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEPTDEE
                     WELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKII
                     TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEM
                     AVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERI
                     EKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL
                     FPPLFLEVFED"
ORIGIN      
        1 ggcgcacaag gcgccgttac cgcagagtcg tagcggggga catttgcaca taagcggcag
       61 atccgtgttt tccctctcgt ccatcagagg acctgcatgg tactaagttc cgcatatgac
      121 ttaatgaata agaagggaat gccagtacag aagatgaccc agcatgacta ctaacctatg
      181 actcctaaca gtatgacaga aaatggcctt ccagcctggg acaaacagaa gccccgtcca
      241 gaccgaggcc aggactggaa gctggtagga atgtctgaag cctgcctgca caggaagagc
      301 cacgtggaga ggcgtggtgc actgaagaat gagcagactt ccccacacct tatccaggcc
      361 acttggacaa gctctatatt ccacctggat cctgacgatg tgaacgatca gagcatctca
      421 agtgcccaga ctttccagac tgaagagaag aaatgtaaag ggtatatccc cagctattta
      481 gacaaagatg agctctgtgt agtgtgtggg gacaaagcca cagggtacca ctatcgctgc
      541 atcacctgtg aaggctgcaa gggcttcttt agaagaacca ttcagaaaag tctccatcca
      601 tcttattcct gtaaatatga aggaaagtgc atcatagaca aagtcacccg caaccagtgc
      661 caggaatgtc gctttaagaa atgcatctat gttggcatgg caacagactt ggtgctggat
      721 gacagcaaga ggctagccaa gcggaagctt atagaggaga accgtgagaa gaggcggcgg
      781 gaagagctac agaaatcaat tgggcacaag ccagaaccca cggatgagga gtgggagctc
      841 atcaagacag tcactgaggc ccacgtggcc accaatgccc agggcagcca ctggaagcag
      901 aagcggaaat tcctgccaga agacattgga caagcaccca tcgtgaatgc cccagaaggt
      961 ggcaaggttg acctggaagc cttcagtcat tttacaaaaa tcatcacacc agcaattacc
     1021 agagtggtgg attttgccaa aaagttgccc atgttttgtg agctgccatg tgaagaccag
     1081 atcatcctcc tcaaaggctg ctgcatggag atcatgtccc ttcgagctgc tgtgcgctat
     1141 gacccagaca gcgagactct aactttgaat ggggaaatgg cagtgacacg aggccagctg
     1201 aaaaatgggg gccttggggt ggtttcagat gccatctttg acctgggcat gtctctgtca
     1261 tctttcaacc tggatgacac tgaagtcgcc ctgcttcagg ccgtcctgct aatgtcttca
     1321 gatcgcccag ggctagcctg tgttgagaga atagagaaat accaagacag tttcctgttg
     1381 gcctttgaac actatatcaa ttaccggaag caccatgtga cacacttttg gcccaaactc
     1441 ctgatgaagg tgacagacct gcggatgatt ggagcttgcc atgccagccg cttcctccac
     1501 atgaaggtgg agtgccccac tgagctcttc ccgcctctgt tcttagaagt atttgaggac
     1561 taaatttact ggacaagttc ttgtcattcc tgcagcacga ctgggtgtca ttgcattcca
     1621 cctgtagcat tctgttgttg tttcttcgtt tctctgtgtc aagtgagatc atcgatggtc
     1681 agcagatcac caatggcata gacttggatg aaattgttct ttgaatgtgg gtctttgtaa
     1741 ccattgcatt ttgttctcca gtccttggtg tgaatgcttt gaagggctta cagcagtgca
     1801 gtctgagtgg ggtacaatca ttatttcacc agcacgaagt catcaccagc tcccatctgt
     1861 ccctgggcag actcaagcaa gccaaacagc atttcagaag actaaagaag ccttaaaacc
     1921 gagaccacag tcatcttgat ccaacatgat ccattctgat gtgtgcaagg tgaagctgta
     1981 gagcccaggc cgcctcaggg tgagcatggc ttttatcacg gaaggggaga aggagcagtt
     2041 tctactcagg agctcatcat tgccagcact cgtgttctcc aagcagcctg acttggaatg
     2101 tgcaggaata tccataccat aacaaatcaa ctttcctttc catggccttt tgtaacctta
     2161 tgatttactt caagttgcac aagagtatga cttgactggt ttgaggccac aaagaaagtc
     2221 tttttttttt tttttttttt tcagtatgcc catagagctt gtaaatcttc atcaatgtta
     2281 aagcatactt tccaaaatgc gtgtggtgtt acctcaagca ggaaggcacc tttccacctt
     2341 agattcacaa gccacaaagc tcgaatctgt ttacatagtg cagtcccttt tcaatggcct
     2401 atgaagcagt cctctgccca gcttagctca caaaggtctt atccaggctg tgtctgttga
     2461 gctgatgatg ttcccctgta gactgaatct tccaatcagg gagacacatg gggaaattcc
     2521 aggcttgttt ggaaaaatcc ctggaaaaga tcagtacagg aacaatcaga ttcaaaggaa
     2581 aaaaactact catggtatag gctgtcagat tagagggaat gctctccctg gatcagcaag
     2641 cgctttactt attcacaaat atctcccagt cccatcccat cgctgtctcc caatctcacc
     2701 cttgtggcta cccacctccc tagattctga ggcactaaat agcttctctc tctctctctc
     2761 tctctctctc tctctctctc tctctctctc tctctctctc tcctaaatct tctgtagctt
     2821 acacaccatt accctggcaa atactcctca taaaatacag cagaccattc atacctgcta
     2881 cccaacttat ccccaatgac caagtagagt agatgtttct aagcaacaag tagtgacaac
     2941 ttacccaaaa atgggcaaag actgtacaca tacaactgaa tgtactgact cttcactgac
     3001 ttcgcagatg taaaatattc tttgcctgcc tttcactgcc ttagcctgga aatgctggga
     3061 aaaaaaacaa gccatatcag caagaattac ctaaaagcaa aggaagtcac tgtgaaaagc
     3121 aaggaaactc aattctttcc actaggcttg gtggggcatc tttggatctt tggcctcgct
     3181 ggaagtcggg ctgcctgagt tctactttgt actctgcagc ctgggtaatt taggacctta
     3241 caatttcagt tttcttacct cctgggaaat gagttgaact ccaaaaatcc ttcttctctt
     3301 ccctattgtt tgacttccag gaaagagagg ggatgtcttt gaaagatcct tttgtattca
     3361 aatttgtagc ttcaaaaagg aatgtatttg ggcaatcaat ttgagtgaga atgagaattt
     3421 gattcagagg aaggcagaat ggccttagag gcataaaact tagaggcaca gcactgaaag
     3481 tcccaagaga ctgggaataa ccaaggaagc aggaatggtt tgtcactaaa ggatttagcc
     3541 tgacttccca gataaaacat cgctgaagag attaaataga aggaagaagc cccattagat
     3601 tcatgttcaa acatgtcaga ggtagcctgt acctggcctc ctgcttcagg aacttcatta
     3661 aacatgtgat ccctatgtca gctcttctgg aagaccttca tccaaacaat aaaaactttg
     3721 ctgtaagacc aattctcctt ccaaagggag agggggaggc agggaggcga gtcctgcaca
     3781 ggcatacaaa cttctggaac accagaattt ctaaggaagt ttcctgattc tgacagtttt
     3841 caaagggaat cagaaaccct ggcactagtg cagggtttga cccagaatca ttcagagtgc
     3901 tgtaaggatt aagcattggg cactagccca gtcttcacaa cccagccagc cacagcaaag
     3961 tgaccctccc tctacagagg cccacctttc agggacagac ccagctctgg caatcatgtt
     4021 tagggttgaa tactccacaa gccatgcgag cttcactctt ctggtgggaa ggaaccagaa
     4081 tgatagtagg tcaggacagc caaagacacg cttttgagaa attcatttta tgaaactaga
     4141 ttgtaaggga tttcctctca aatttttttc ttctctttta aaaaatcatt ctcttctaat
     4201 cttgtccaga ctttcaaatc aagtgtggac atggtggcag gaacctttac acctgctcca
     4261 ctgtggggag atattccagt caagaaaaca cactcatcct gctgggatgc tcactgacaa
     4321 atggaattta tggacaagaa ggctgtgcac atgcagcaaa aatgtgcatg tgtacacatg
     4381 tgcgtatatc tgttcattgc ctcaagtgta cttcgcactt cagtttaaat gtgcagaact
     4441 tccagaaact ggaaggaaaa aaaaaaaaaa aacttcttca tgattctgct gaaaacacca
     4501 cgtgctgcct ctgagctttt tctagtccct tgagcctcag tcctcagtga tgcgcttatg
     4561 tgatgaagcc tcagcccagc gcatcccctg cctctttccc agttcaatct tggggagggt
     4621 ccttctcaca gtgacctgca ggctggccct gccaccttgg cctcctcaca ctcagttctc
     4681 cccaagccag catcccgacc tgctgagcct cttcagagca tgtcattgtc agtaagacct
     4741 cttcattctg tggaactcaa gcctatccat gtcatattga ccttttgctg catgagtcat
     4801 aaattatcaa atcagtctta cggtttttga gatgtagcca gtgttttata aggctaaacc
     4861 tttctcatga acttaattta agtgaataac caaactaccg gtccttctcc aatgagagat
     4921 gacagacaat tgaatctctg ccctttgcag tggcgatggc atcaggtcct aaaataagct
     4981 tataattttc ctgttatttt aataatatgg aaatattaaa ataatgtttc ttttgatagt
     5041 gatagactga tccatattta aattttatag agaagaaatt ttattgtact gtgatataga
     5101 tatttattat ccaggtaagg acttgcccgg tgtgtatttt ttacaattga aacattttac
     5161 tttaatctct aaaagaaaaa agactataaa acatatacat attaaaaaaa ggctagggag
     5221 aaaaaaggtt tggctttatc aaagaatttt tactgtgttg tatacatgtt tgcaaatgaa
     5281 aaatttacac atttttagtg tttccacatt aattagtgcc gccttcaaga gcaatattgt
     5341 gcagtaaaca ctgtttgtgg ctttctgttg cccagctcaa actgacccca tcttatgcac
     5401 aagacaatca gatgttacgt ctttcctctg aggacataga caatactcaa cagagcacaa
     5461 tgtgaaacaa agaacaagat tgtaggcatg ggctgtgctg ctgatggaga tgatcagggt
     5521 gcatgcgcac tcacatggcc ttgtaccact gcctcctttt ggttgttctt tgtgacgttg
     5581 gtatctttct cttgacatca aatagccaaa gtagttctcc atgttttctt cagaaaagac
     5641 cattcttttt cccataatgt gttcatgccc tgagaatcag aaaaatgaaa acaaaaacaa
     5701 aaaaagatac ggatggaata gagaggttta tagtcagtgg aagattggta ttttgcaaac
     5761 agtgttaagt gatattgcta ttgctagatt ggtaattttt tttcagccta aaatcgttga
     5821 aatctgtgat caaatgtttt aaactatcca gaaagaaaat ttgtatattt gggaaaatgg
     5881 atttttacat agcttttgta tgcggatatt aaattgtaat tatgaatata gtggacatag
     5941 gtactcataa gcttaaattc taaaaaagaa aaagcttaca atagata
//
