LOCUS       XM_011250230            3814 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus thymocyte selection associated family
            member 2 (Themis2), transcript variant X1, mRNA.
ACCESSION   XM_011250230
VERSION     XM_011250230.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011250230.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3814
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..3814
                     /gene="Themis2"
                     /gene_synonym="ICB-1"
                     /note="thymocyte selection associated family member 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 61 ESTs, 7 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 16 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:230787"
                     /db_xref="MGI:MGI:2446213"
     CDS             1061..2755
                     /gene="Themis2"
                     /gene_synonym="ICB-1"
                     /codon_start=1
                     /product="protein THEMIS2 isoform X1"
                     /protein_id="XP_011248532.1"
                     /db_xref="GeneID:230787"
                     /db_xref="MGI:MGI:2446213"
                     /translation="MPQNSTRWPIYFKSTQRIVTKASVVPEDQPLRLEAVEIHHGIRY
                     ARCVQVSKTKELLHLPLSQKGPFWRCKPSAPQTLHQILQDPALKDLTLSCPSLPWNSV
                     ILKPQYMLQAIMHMRSSIVKIPSTLEVEVEDVTASSQHIHFFKPLRLSEVLAGGGPFP
                     LTTEILEVPEGPPVFLSPWVSFLRKGQRLCIYGPASPSWRVVASSKSRKVPRYFMLSG
                     AYQGKLKRRPREFSTAYDLLGALQPGRPLRVVATKDCDGNEEENPDFSFLAVGDRLEV
                     LRSGQVCGTKGQDIDVLVCQRLSEQSGEEEEDLEEIEDEAEDKEQILLPLYLSGSFVE
                     EVNDSRRYNLVDLTAQYSLPCEVKVVTKDTRHPTDPLASFPGLRLEEKLTEPFLVVSL
                     DSQPEMCFEIPPRWLDLTVVEAEGQPAQVARPLSIAPVEELSEAFYYSLRKLPASESQ
                     APPPRPPKSQGINKKQQNIQSCKESSVKPQVVEPQKSCPQPQLKAKTLEALPKNKSNV
                     YSKISVHKKDRKPNPQTQNSVLSMKPKTSSSLGKHSTMESHLLPDPDMDDHDYEEI"
ORIGIN      
        1 taacagaaat tgtgtggcag ctaggcagga gcgatctgaa cagcctagga aatcctgtct
       61 caagcaacaa gaacaattat aacaataaat ggacaaataa gtggggataa ctcgtccatc
      121 gtttcagaca ggcactaggg tgctcactgt cgttattggg gttgttctga gaggaccttg
      181 ttttgtagcc caggctggcc ttaagtttgc agcgatccgt ctgcctctgc ctgaatttgc
      241 catgcctggt tcactgttca tttttctttc ttgctccctc cctccgttct cttttattat
      301 cttctttccc tttctgcaag gatccaaccc aggaccctga gctctcacca ctaagatata
      361 ttccagttcg ttattttagc accagatcag ccctcccgct gaactctctg ctccttgcct
      421 ctgagtctct ctgttcctct gctggattct cagatggagt ggtcctccta ccagggggat
      481 ccttccccgc tttttgcctg tacatttgct ccttgcccat ggctttccgc aacccatagc
      541 agagaagaga tggccatatc aggacacagc caccagttac tggccaaata acatgtgacc
      601 agggactgac cacttgggta agggagggaa gaaaagggac cgaccgggct gctctgtgga
      661 gggcagaggc gagagtggag ggagatgctg agattcaggg ctcctccctc agacagcaag
      721 ctgtctcatg gatgcctgct tcattctact ccctggagtg agcgagccag gctctgccac
      781 agcagctgcc agcaaagtgt tctgatggcc aagcgggtta tagactgacc taggaggatc
      841 acacaagggc caccacagtt ccgtctacga gctctttggg aatgagtgct gcctctccac
      901 cggggaccta atcaaggtca ctcatgtcca gctccaaaag gttgtgtgcg agtatccaga
      961 gacgggtcag acgttggagc tcaaccccaa tttcacaggc ctcttcagcc cactcaccag
     1021 cctgcgaagc tacagaaccc tggaggacct tgtctctgcc atgccccaga actccacccg
     1081 gtggcccatt tacttcaagt caactcagag aattgtcacc aaggccagtg tggtgcctga
     1141 ggatcagccc ctcagacttg aggctgtgga aatacaccat gggatccgct atgcgcgctg
     1201 cgtccaggtc tcaaagacca aggagctcct tcatctgccc ctttcccaga agggaccctt
     1261 ctggagatgc aagcccagtg ctccacaaac tctgcaccaa atcctgcagg acccagctct
     1321 gaaggacctc acgctcagct gccccagcct accctggaac tccgtgatcc taaaacccca
     1381 gtatatgctc caagccatca tgcacatgcg cagcagcatc gtcaagatcc cgtctacgct
     1441 ggaggtggag gtagaagacg tcactgcttc ctcccaacac atccacttct tcaaaccctt
     1501 gcggctgagc gaggtgttgg ctgggggagg ccccttccct ctgaccacgg agatcctgga
     1561 ggttcctgag ggtccgcccg tcttcctcag cccgtgggtg agcttcctac gcaaaggcca
     1621 gaggctctgc atctatggtc cagcttcacc atcctggcgg gttgtggcct ccagcaagag
     1681 ccgaaaagtg cccagatact tcatgctctc tggggcctac cagggcaagc tcaagcggag
     1741 gcccagggag ttctccaccg cctatgacct tttgggggct ctccagccag gccggcccct
     1801 ccgggtggta gccacaaaag actgtgatgg gaatgaggaa gagaatcctg acttttcttt
     1861 cttggctgtg ggtgatcggc tggaagtgct gaggtcaggc caggtctgtg ggaccaaagg
     1921 ccaggacata gatgtcctgg tatgtcagcg gctgagtgag cagtctgggg aggaagagga
     1981 ggacttggag gagatcgagg acgaggcaga ggacaaagag caaattctgc tacccctcta
     2041 cctctctggg agctttgtgg aggaggtgaa cgacagccga cgctataacc tagtggatct
     2101 cacggcccag tactccctgc cctgtgaggt caaggtggtg accaaggata cccgtcaccc
     2161 cactgacccc ctggcttcct tccctggcct gcggctggag gagaagctca cagaaccctt
     2221 tttggtggta agcctggact cccagccaga aatgtgcttt gagatccctc cccggtggct
     2281 ggacctgact gtggtggagg ctgagggaca gccagcccag gtggctcggc cgctgtccat
     2341 cgctccggtg gaggaactgt cagaagcttt ctactacagc ctccggaagc tgccagcctc
     2401 tgagagccaa gcccccccgc ccaggccccc aaagagccag ggtatcaata agaaacagca
     2461 gaacatacag agctgtaaag agagcagtgt aaagcctcaa gttgtagaac cgcagaaatc
     2521 ctgcccgcag cctcaactca aggcgaagac cttggaagcc cttcccaaga acaaatcaaa
     2581 tgtgtacagc aagatttctg tccacaagaa agaccgcaaa cccaaccccc aaacacagaa
     2641 ttcagtgctg agtatgaagc ccaaaacctc gagctccctc ggcaagcact ctaccatgga
     2701 gtcacatctc ctgcctgacc cggatatgga tgaccatgac tatgaagaaa tttgaacacg
     2761 ttcagaaaaa agtcatctaa agtgtaggga agccacattt ccagttgcca ccacacagga
     2821 ctcggatact agctaactct tggaggacct agggcaaagt ctcaggggac ttagactcca
     2881 atgggcatgg gaccgatact atccctgcct ctttgggttc caggtcggct tgttgcatgt
     2941 gacaccctca gccttagagc gttggtgtcc agagaagcca ttcaggttct gggccctcct
     3001 atgcccatca gttgtcccac tactaggcac agagaaggat caaaggccac cagcttcagc
     3061 atcgccctgc ctctcagtaa agagaactca gttctgattg aactacccaa tgtaggccac
     3121 ctcctttgtt tgctctgcac ttgtgcagtg caggctctgt gcctaggggc agacagtatt
     3181 ctcttgttgg tagagcccag ctcatgatca ataataccca gtaaatgggc ttgtgtgact
     3241 gaatgtaggg atctgcctcc aagaataaaa tcctaggtag gacactagta ctccaaatct
     3301 gtaagtggaa ctaagagagc taatttacaa aggtggaggg actggagaga tggctcagtg
     3361 gttaaaagca ctttgctgct cttacagagg atccaaggtc agttcccagc acctacatca
     3421 ggtggttcac gactgcctat aactccagct gcaggggatc ccatgcctgc ttctggactc
     3481 atgagcactc cgttcatgtg aacaccaagc ccctgcaacc cccccacaca gttagacaca
     3541 atttaaacat ttaaagctgg gcttggtggt gtacaccttt aatctctgga ggcagaagca
     3601 gggagatatc tgtgaattcc aggtcagcct gatgtacatg cttatttatt aaacaaaatc
     3661 aagaaactct ggagacccaa agttgtggaa atctggcagg ccttgggtgg ttctctgaca
     3721 ctgttaaaga aagctgttag atgactgact acccaagatc accttatgct aaagcctcag
     3781 aataaaaatg atacacactt ctgtatgagt gaaa
//
