LOCUS       XM_006512643            4638 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus thymocyte selection associated (Themis),
            transcript variant X1, mRNA.
ACCESSION   XM_006512643
VERSION     XM_006512643.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000076.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4638
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="10"
     gene            1..4638
                     /gene="Themis"
                     /gene_synonym="E430004N04Rik; Gasp; Spot; thylex; Tsepa"
                     /note="thymocyte selection associated; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 33 ESTs, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:210757"
                     /db_xref="MGI:MGI:2443552"
     CDS             119..1762
                     /gene="Themis"
                     /gene_synonym="E430004N04Rik; Gasp; Spot; thylex; Tsepa"
                     /codon_start=1
                     /product="protein THEMIS isoform X1"
                     /protein_id="XP_006512706.1"
                     /db_xref="GeneID:210757"
                     /db_xref="MGI:MGI:2443552"
                     /translation="MADKTPYLSIEEITRTVNIGPSRLGHPCFYHLKDIKLENLIIKQ
                     GEPIRFNSVEEINGETLVNCGVVRNHQSHSFTLPLSQEGEFYECEDEHIYTLKEIVEW
                     KIPKNRTRTVKLTDFSNKWDSTNPFPEDFYGTLILKPVYEIQGVLKFQKDIVRILPSL
                     DVEVKDITDSYDANWFLQLLSTDDLFEMTSKEFPVVAEVVEISQGNHLPQSILQREKT
                     IVIHKKYQASRILASEIRSNFPKRHFLIPISYKGKFKRRPREFPTAYDLQIAKSRKET
                     LHVVATKAFHTLHKELSPVSVGDQFLVHHSETTEVVFEGTRKVNVLTCEKVLNKTRED
                     AQLPLYMEGGFVEVIHDKKQYQISELCTQFCWPFNVKVAVRDLSIKDDILAATPGLQL
                     EEDITDSYLLISDFANPEECWEIPMSRLNMTVRLVNGSSLPADAGLLQVRSFVEEITE
                     EQYYMMRRYESSLSHPPPRPPKHPSAEEMKLTLLSLAEERTINLPKSLKSHHVDRPKK
                     LPSDESGQDSRAPVGFQNDVADVERQKSKHGPLQPQAPL"
ORIGIN      
        1 agtgaacttg tggctaagtt cttgatctca ccagtttcat catctcctgg gttgggaaac
       61 gtttcattgg aactcactgt ccaccttgat acatgtcaca gcaggtctct ttaaggtcat
      121 ggctgataaa actccatacc tgtcaattga agaaatcaca agaaccgtta atattggacc
      181 cagcagacta ggtcatcctt gcttttatca cctgaaggat ataaaactag agaatctcat
      241 tattaagcag ggtgagccaa tccggttcaa ctcagttgaa gagattaatg gagaaacgct
      301 ggtgaattgt ggtgtggtaa ggaatcatca gagccactca tttactttgc cattgtcaca
      361 agaaggagaa ttttatgagt gtgaggatga acatatctat accctaaaag aaattgttga
      421 atggaagatt cccaagaaca gaacacggac agtgaaactt acagatttct cgaataagtg
      481 ggactcaacc aatccattcc cagaagactt ttatggtaca ctgattctca aacctgttta
      541 tgaaatccaa ggtgtgctga aatttcaaaa ggacatagtc cggattctcc caagtttaga
      601 cgttgaagtc aaagatatta ctgattctta tgatgctaac tggtttcttc agttgctgtc
      661 tacggacgac ctttttgaaa tgaccagcaa agagtttcct gtagtagctg aagttgtcga
      721 aatatctcaa gggaaccacc tgccccaaag tattttgcag cgagagaaaa ccattgtcat
      781 ccacaaaaag taccaggctt cgaggatctt agcttcagaa attcgcagca atttccctaa
      841 aagacacttc ttgatcccta ttagctacaa aggcaagttc aaaagaagac cacgggagtt
      901 ccccacggcc tatgacctgc agatagctaa gagcaggaaa gaaactctcc acgtggtggc
      961 caccaaagct ttccatacac ttcacaagga gctgtcccct gtgtctgttg gagaccagtt
     1021 tctagtgcat cattcagaga ccacagaagt tgtctttgag gggacaagaa aagtaaacgt
     1081 tctgacctgt gaaaaagtcc tcaataagac ccgtgaagat gcacagcttc ctctatacat
     1141 ggaaggaggt tttgtagagg tgattcatga taagaaacag tatcagattt ccgagctctg
     1201 tacccagttt tgctggccct tcaatgtgaa ggtggctgtg agagatctct ccattaaaga
     1261 tgacattttg gcagctaccc caggacttca gttagaggag gacatcacag attcttatct
     1321 acttatcagt gactttgcaa atcctgagga atgttgggaa attcccatga gccgcttgaa
     1381 tatgactgtt cgactagtta atggtagcag tttgcctgca gatgcagggc tacttcaagt
     1441 caggagtttt gtagaagaga ttacagaaga acagtattac atgatgagga ggtacgaaag
     1501 ttctctatca catcccccac ctcgccctcc caaacatccc tcagctgagg aaatgaagct
     1561 caccttgctc agcttagcag aagagagaac aataaatctg cccaagtctc tcaagagtca
     1621 ccatgtagac agacccaaga agcttccctc agatgaaagt ggccaggatt caagagctcc
     1681 agttggtttt cagaatgatg tggctgatgt ggagagacag aagagcaagc atgggccact
     1741 gcagccgcaa gcaccactgt gactacataa ctcttcaaaa ctgaaaaaca tcaaaaataa
     1801 caagacgtga tggaagccac ttgggcagta aacataaatg ttgcaatgaa gaagaaagtc
     1861 tagccttcca gctgaaaaac agcaattccc caatggactc tggcagaatc tggactggcc
     1921 actgcaaaga caaaaacaag cttaaatgtt ttatcatata gagctcaaag agagaaccat
     1981 gatatggaat ttaaattgtc tatttggttt cttaaaaccc acaagtgtgg ttttcttgtt
     2041 gtttaagaca tatttattta atatgcattt ttatgtagct tgtttttgct atcaacaatt
     2101 ggcaattaga aataattttg tacttcaatt attcagtaga atcctatttt tgaaagtcta
     2161 aactctcact gaatgttcac ctttatttcc aagcagtttt ctttccattt ttccaggttc
     2221 atcatcattt ctgctaaact caataaggaa aatgaattac atctgacagt gacttaaaat
     2281 ggccaagtat cttctctgat tccttgggaa cagtgaaaat aagtttgact tcacattttc
     2341 aatttgtttt ataatacaat gtaaataaat gtcaactccc aacaactggc accattatga
     2401 gtcacagaac cttctctaac ctcctccctc cacttctaaa agggagagtt gctgaccaaa
     2461 gaatcaccca ggttctgaaa atttgccttg tactttatat actatattct tgatcttgct
     2521 tctaatgaat gcttattagg attgtagtaa accatttagt taaccataat atttgatgag
     2581 aagaaagaca caatataatt gtaatgagcc ttataaatat agttgacaga agccaaagag
     2641 attattaatg aataaataac agaatagtac ttatagctat atgcctgtaa aaattaaagg
     2701 caaacatatt ttataagttt tcttattatg tgttaaatat acagaaataa cattactttt
     2761 gtctttcata acgtgaagag actgagaatt tttcaaggta ggttacatag agaatagtgg
     2821 gaaaccttag gtttttttca taagtcagac ttttacaaaa ctttactctg atctcataat
     2881 taatttataa gttggaaaaa cgtatttgat gatttagtac tgaagagtct ttaaagatag
     2941 caacctatga gattattttc atcatataat cacagctagt gatcttttat ataatgttta
     3001 tatcctgatt tcttatcctt ttctctttaa ataacaacta atctttattt taatgcttta
     3061 aaaattgctc agtgacataa ctgttaccat attatatgtc aataacaaaa ttttaggaga
     3121 tgtattatgt gtaattagta aaatacaagg tgattgtttt tgataatttt ttagtttagt
     3181 ttacacacat ttgattagta aatgagaaag ttgatgtctc tgcattttgg tttttagaca
     3241 ccatagagaa tcatgaccca accacatatc ctaagaaagc tatattatgg ataatctggg
     3301 accagtacaa ttttcagcta agagtgagca ctgaatattt ttagtttggt atatgagcac
     3361 agttgaattt ggactttttg taagcccatg tctttgacta gaaaatgaga aaatgaattc
     3421 tcttccttta gttgtgaatc atcaaaaact ttctaccata tatcatgtct accatttcta
     3481 tcttaatgaa attccccttg cataatctgc ttctagttgt cttggaatca aaaatataat
     3541 aaactttatg acctgtccaa gatcttgaga agttggaaca aaaattttca ttgttcatat
     3601 atatgcatct ctggccatgg ttaactatga aataagttac tttctataac aatttagcaa
     3661 aaacatatta tttaactaga actgaaacca gttttcacca ttgaggaaga tgattttttt
     3721 ttaaagccag gaagaaaaag agtgtcccct acattcctac ccactgtggg tttgcaatca
     3781 tgggcccagt catagcaaca aaatttctcg gcacagtcat gatgcataaa gaggtgtcaa
     3841 tatgaccagt tactaaatct actaattaaa aagctgactt ccctaatatt gaatcattga
     3901 agaagtttga aggatgctat cttagatagg gttactacta ctttaatgaa acaccatggc
     3961 aaactgcaac ttgggggagg aaaggcctta tttcactcac tgttccatat atcagttcac
     4021 catcaaaagc agtgagggca gaaacctgaa ggcaggagct agtgaagaga ccacagaggc
     4081 ttgctgctta ctggtttact ccttatggtt tgcccaagga tgcccctccc cccccacaca
     4141 cacacaatga gctgggacct tcctcatgaa gagggcaaag tatcaggata gactccctct
     4201 tgctctctaa actccatttt aagttgcttg tcctcagagt gacatggcct tcacccttgg
     4261 catctagaaa agtgaccaca aagtattatc aggagttgaa aatagacata aaacctttgg
     4321 ctagctcata ataacaagat agattggtca caataacagg atgatttcag aaaacctgag
     4381 tcattcccag gtcaagagcc ccttagatgt acactctctc cttgtggttt gaacagatga
     4441 tttgcaccaa tcagtttaaa ggtcaatatt tctttactca tttacccaat catgtaacac
     4501 caaggcttga aagctcctgc ttgcaatttt ttgcctatat aaatcctaaa ctcctagacc
     4561 tttcttaatc tgttgcatca ggaaggtttg tgttccgagt ccaaatctga ataaagactt
     4621 tcatgtgctt acattgga
//
