LOCUS       XM_030249804            5560 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus thyroid adenoma associated (Thada),
            transcript variant X9, mRNA.
ACCESSION   XM_030249804
VERSION     XM_030249804.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000083.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5560
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="17"
     gene            1..5560
                     /gene="Thada"
                     /gene_synonym="6530405K19; A930021O22; GITA"
                     /note="thyroid adenoma associated; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 101 long SRA reads, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     8 samples with support for all annotated introns"
                     /db_xref="GeneID:240174"
                     /db_xref="MGI:MGI:3039623"
     CDS             194..4048
                     /gene="Thada"
                     /gene_synonym="6530405K19; A930021O22; GITA"
                     /codon_start=1
                     /product="tRNA (32-2'-O)-methyltransferase regulator THADA
                     isoform X5"
                     /protein_id="XP_030105664.1"
                     /db_xref="GeneID:240174"
                     /db_xref="MGI:MGI:3039623"
                     /translation="MGVKKKREMQVAALTVCHQDMETLRSFADMEGKNLASLLLHCVQ
                     LTDGVSQIHSIKQIVPLLEKVDKNGVCDPAIQSCLDILAGIYFSLTLKNPLKKVLASS
                     LNGLPEVFLTQATHSFTFHLQEELDTADLYSYRKVMDNISSCMENFNLGRASVVNLLK
                     DVLHFLQKSLIEILEENRKFAGNRIVQTQLMSDLLVGVRVAMTLVQKVQGPQGSLWND
                     SSSPIWQSMCGLLSIFTKFLNDDDLLQTVESTSGLAVILFIKTMFRPSEKLPGLISSL
                     LLRSAECTSIPEWLMNSCRSLCCTDVPASTLLFLCQGTLAMLDWQDGSMGPSGEALLL
                     DIVHVLFTLSSQIKESTLDMFLSRILASWTSSAIQILESGSSGLKGHLNGDSCVPRRL
                     LEYVYTHWEHPLDALRHQTKVMFRNLLQMHRLTMEGADLATDPFCLELTKSLLQLEWH
                     IKGKYACLGCLVETLGIEHILAIDKTIPSQILEVMGDQSLVPYASDLLETMFKNHKSH
                     LKSQTVTNTWMDKWHETWVFPVLSVLCGGNLDQRSYVIDYYLPRILNYSPESLHYMVH
                     ILQASTDTGTGSCNHRGALGALMACLRTARAHGHLQSATQAWENLVCSARVKQGLIHQ
                     HCQVRIDTLGLLCESNRSTEVVSTEEMQWVQFFITYNLNSQSPGVRQQICSLLKKLFC
                     RIQESSQVLYKLEQRKSTPDSENGSIREQPSVTLQQYKNFMSSVCNILFEALFPGSSY
                     STRFSALTILGSVAEVFPDPEGNIQTVYQLSHDIDAGRYQILMECFTSTFEEVKTLAF
                     DLLMKLSSVTAGQFQDSEKLQDLFQAALELSTSTKPYDCVTASYLLNLLIRQDALPAV
                     LSASSPQQLTRGAGETSAVLERNTLVVIKCLMENLEDEISQAENSLLQAASSFPMYGR
                     VHCITRAFQRLPLNDLRLASEWRPLLGRLLLLSYRLSTVVAPVIQSSSPEGLIPVDTD
                     SASASRLQLILNEIQPRDTNDYFNHTKILKECDSFDLEDLSTSVSNIDSSAEVKGKEE
                     KACDVTAQMVLACCWRSMKEVALLLGTLCQLLPVQPGPESSNVFLTVQQVKEIGDYFK
                     QHLLQSRHRGAFELAYTGFVKLTEILNRCSNVSLQKLPEQWLRSVLEEIKGSDPSSKL
                     CATRRSAGIPFYIQALLASEPKKSRMDLLKITMRELISLALSADDSKGRVPQVHALNI
                     LRALFRDTRLGENIIPYVAGGAKAAILGFTSPVWAVRNSSTLLFSSLITRVFGVKRGK
                     DEVSKTNRKTDSTSFCGYLLHC"
ORIGIN      
        1 cttcgccggg gaccggtttt tggatcgcgc accacgttac aagccgcagg gacgcggtag
       61 acttgacggg cttccgggtc tcgtccagag gtggcgacgc tttgcagacg tcctcgggca
      121 cgaggagaaa ctctccactg gaccactgcc tcaagttctt ccttcttgca gagcgctgtt
      181 catcctgtgt aagatgggtg tgaagaagaa aagagaaatg caggttgctg cgctgactgt
      241 ctgtcatcag gacatggaaa ctttgagatc ttttgctgat atggaaggga aaaatctagc
      301 ctctttgctg ttacattgtg tacagctcac agatggagtg tcacaaatcc actctattaa
      361 acagattgtg cctctcttgg agaaggtcga taaaaacggt gtgtgcgatc ctgctattca
      421 gagttgtttg gatattctag caggcattta tttttccttg actctgaaga accccttgaa
      481 gaaagttttg gccagctcac tcaatggcct acctgaggtt tttctaactc aggcaacaca
      541 cagttttact tttcatcttc aagaagaatt agatactgct gacttatatt cttatagaaa
      601 agtaatggat aacatatctt cctgcatgga gaactttaac ctgggtagag caagtgtggt
      661 taatctgctt aaagatgtgc ttcattttct gcagaagagt ttaattgaaa tcctggaaga
      721 aaacaggaag tttgctggaa atcgtattgt tcaaacacag ttaatgagtg acttgctggt
      781 aggtgttaga gttgccatga cattggtaca gaaagtacag gggccccagg gcagcctctg
      841 gaatgactcc agctcaccca tctggcagag tatgtgtggc ttgctgagca tcttcaccaa
      901 gttcttaaat gacgatgacc tactgcagac tgttgagagt acatctggat tagctgttat
      961 tcttttcatt aagaccatgt tccggccatc tgaaaagctt cctggattga tcagcagctt
     1021 gcttctccgg tctgctgagt gcactagcat ccctgagtgg ctcatgaata gctgtaggag
     1081 cctttgctgt actgatgtgc cagcctcaac tctcttattc ctgtgtcagg gaacacttgc
     1141 tatgctggac tggcaggatg ggagcatggg ccccagcggg gaggctttgc tcttggatat
     1201 agtgcatgtt ttgttcacct tgagttcaca gattaaggag tccacattag atatgttcct
     1261 gtctagaatc ctggcatctt ggaccagttc agccatacag atccttgaat caggctcctc
     1321 aggcttaaag ggtcatctga acggggactc atgcgtacct aggagacttc tggagtatgt
     1381 ctacacacac tgggagcacc cgttagacgc tctgagacat caaaccaaag tcatgttcag
     1441 gaatctcttg caaatgcacc ggctcactat ggaaggggca gatttggcca ctgacccctt
     1501 ctgtctggag ttgactaaga gtcttctgca gctggaatgg cacattaaag ggaagtacgc
     1561 ttgccttggc tgtttggtgg agactcttgg aattgaacat attttggcaa tagataaaac
     1621 cattccatct caaattctag aggtgatggg agaccagtca ttggtacctt atgcaagtga
     1681 cctcttggaa accatgttta aaaatcataa gagccatttg aagtcccaaa ctgtcaccaa
     1741 tacctggatg gacaagtggc atgagacttg ggttttccct gtcctttctg tactgtgtgg
     1801 aggaaacttg gatcagagat cttatgtgat tgattattac ctgccacgga tactgaatta
     1861 cagccccgag agcctgcact acatggtgca cattcttcag gcatctactg atactggaac
     1921 tgggtcttgt aatcacagag gagctctggg agctttgatg gcgtgtctcc gaacagctag
     1981 agctcatgga catcttcagt ctgcaactca ggcctgggag aaccttgtgt gcagtgcaag
     2041 ggtaaagcaa ggcttaattc accaacactg ccaagtgcgg atagatacac taggcttgct
     2101 ttgtgaaagt aatcggagta cagaagtggt ctctacagaa gaaatgcagt gggttcagtt
     2161 ttttatcact tacaacctca acagccagtc tccaggggtg cgccagcaga tttgctcact
     2221 ccttaaaaag ttgttttgca ggatacaaga aagttcacag gtactttata aattggaaca
     2281 gagaaaatct acacctgact cagagaacgg gtccatcaga gagcagcctt ctgtcacttt
     2341 acagcagtat aagaatttca tgtcgtctgt ttgcaacatt ctctttgaag cattgtttcc
     2401 tgggtcttcc tactcgacta gattttcagc tttaactatc ttaggatcag tagctgaagt
     2461 gtttcctgat ccagaaggta acatccaaac agtgtatcag ctgagtcatg atattgatgc
     2521 tggccgttac caaatactta tggagtgttt cactagtact tttgaagaag tgaaaacctt
     2581 agcatttgat cttctgatga agctgtcgtc agtaacagct ggacagttcc aggattctga
     2641 gaagctgcaa gacctgttcc aggcagcgct ggaactcagc actagcacca agccttatga
     2701 ttgtgtgaca gcctcctacc tgctgaactt gctgatacgg caggatgctc tgccagccgt
     2761 cctgtctgcc tcttccccac agcagctcac acgtggagca ggagagacgt ctgctgtgct
     2821 ggaaaggaac acattagtgg ttattaaatg cttgatggaa aaccttgagg atgaaatatc
     2881 tcaagctgag aactctctgc ttcaggctgc gtcttcattt ccaatgtatg ggagagtcca
     2941 ctgtataaca agagcttttc agaggttgcc tctaaatgac ctgcggctgg cgagcgagtg
     3001 gaggccgctg ctggggaggc ttctgctgct gtcctacagg ctttccactg tggtggcccc
     3061 tgtcatccag agctcctctc ctgaaggcct catccctgtg gacactgact cagcgtcagc
     3121 aagccgcttg cagctcattc tcaatgagat ccagccacgg gatactaacg attacttcaa
     3181 ccacaccaaa atactgaaag aatgtgatag ctttgatttg gaggacttga gtaccagtgt
     3241 ctcaaatatt gatagttctg cagaagttaa aggtaaagaa gaaaaagcgt gtgacgtaac
     3301 tgctcagatg gtcctcgcgt gctgctggag gagcatgaag gaagtggctt tgcttctcgg
     3361 cacgctctgc cagcttctcc ctgtgcagcc tgggccagaa tcttctaatg tgttcctaac
     3421 agtgcagcag gttaaagaaa taggagatta ctttaaacaa caccttttgc agtccagaca
     3481 cagaggagca tttgaactgg cttatactgg ttttgtgaaa ctcactgaaa tattgaacag
     3541 gtgctctaat gtgagtctgc aaaagctgcc agagcagtgg ctgcggagcg ttctggagga
     3601 aattaaaggc agtgatccct catccaaact ttgtgctaca aggcgcagtg ctgggattcc
     3661 cttctacata caggcattgt tggcatctga accaaagaag agtagaatgg acttgctgaa
     3721 aataacaatg agggagctga tctccttggc tttgtctgca gatgactcaa agggcagagt
     3781 ccctcaggtt catgctttaa acattctccg agccttgttc agagacaccc gtctgggaga
     3841 aaacattatc ccctatgttg ctggtggagc taaggctgca attctgggct ttacatcccc
     3901 tgtctgggca gtgagaaatt catccacact tctctttagt tccttgatca caagagtttt
     3961 tggcgttaag agaggaaagg atgaagtttc caaaacaaat aggaaaacag attccacaag
     4021 tttctgtggt tacctactcc attgttgaag gaagaactgg attctcaaaa ctcaaattga
     4081 gagctgtgga gtatgtgggt ttttgtgctt ttgaaaatgt aattattaga attcacaata
     4141 ggttgtttga tttgaactgt ttagtagctt gcagcaagta cttatttggc caaactgaaa
     4201 ccagaatttt cccaaaagaa ttctcatttt cttcactaaa tgtgcatttg ttgtgtcctt
     4261 actctggacc aggtactaga atacagacag ggatcagaag tattccatgc tgtgctaaag
     4321 atggagctca attgaaggtc tgcgtggcgt ccgcagagcc ctgggttcag gctctagtac
     4381 cactgaaacc ccaggtggtg atgagtgcat aaagtcccag cacttgagag gcgaagactg
     4441 gaaggctgga aactcaagtt cattcttaag aattagaagc tagggctgta gagttggctc
     4501 agtgtcaaga gtatttgttg ttgcaaggac ccaggttcga gtctcagcac ccacatggag
     4561 gcttaccacc tcaaagacca gcaactgtgg tgcacagaca cacatgaagg caaaactcta
     4621 atacacataa aataataaaa atctaaaata tttttaaaac atttgtttac ttattttatg
     4681 aatatgagta caccaccatt gttctcttca gacacaccag aaggggacat cagaccccat
     4741 tacagatggt tgcgagccac catgtggttg ctgggaattg aactcaggac ctctggaaga
     4801 gcaattggtg cttttaacca ctgagccatt tcccccagcc ctaatttttt tttttttaag
     4861 ttagaagcta gccttggtta caacattttg tctaaaataa tttgagaaga tggaggagaa
     4921 aagggaagtt gtcatagcca gtaaaggcat gagtcgcata agcctgaata tgtaaattca
     4981 gtttcttgaa cccacaatga aagcagaagg aaagagtgat tacagagttg atcctgcccc
     5041 tccccatcat gcgcacgcgc acacgtgtac acacacacac attccatgtc cttggggaaa
     5101 ctgaagggtt gatgaagatt atctgctgtg ttcgagtctc tgttgaaggg caggagaggt
     5161 tcccttgatg cctacccgtt tcccatcctg tgttgtacgg gcccggcctt cccaggcccc
     5221 ctttacttca tgcctatgga ggtaatggaa gaacgggctt cagtatcaag gattccagta
     5281 tcatgctgca gaaccaggaa ggtagaagtc ttggattcag tttgacttac cccaccaagg
     5341 tgccagtgct gctgttagac atttgccgtt tttacagtta actctataaa acttttatgt
     5401 ttgataatag ctgggtgcta tgggatgaga atttgggggc ttataaaact tctttcctgt
     5461 aatgtgattt cttttagact taactaaata ttttttatag tccatgcttg tgtttttcat
     5521 tcatgtcttt aattaaagcc agtcttgatt gtaacagcca
//
