LOCUS       XM_030249803            5869 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus thyroid adenoma associated (Thada),
            transcript variant X7, mRNA.
ACCESSION   XM_030249803
VERSION     XM_030249803.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000083.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030249803.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5869
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="17"
     gene            1..5869
                     /gene="Thada"
                     /gene_synonym="6530405K19; A930021O22; GITA"
                     /note="thyroid adenoma associated; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 14 ESTs, 92 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     18 samples with support for all annotated introns"
                     /db_xref="GeneID:240174"
                     /db_xref="MGI:MGI:3039623"
     CDS             194..4549
                     /gene="Thada"
                     /gene_synonym="6530405K19; A930021O22; GITA"
                     /codon_start=1
                     /product="tRNA (32-2'-O)-methyltransferase regulator THADA
                     isoform X3"
                     /protein_id="XP_030105663.1"
                     /db_xref="GeneID:240174"
                     /db_xref="MGI:MGI:3039623"
                     /translation="MGVKKKREMQVAALTVCHQDMETLRSFADMEGKNLASLLLHCVQ
                     LTDGVSQIHSIKQIVPLLEKVDKNGVCDPAIQSCLDILAGIYFSLTLKNPLKKVLASS
                     LNGLPEVFLTQATHSFTFHLQEELDTADLYSYRKVMDNISSCMENFNLGRASVVNLLK
                     DVLHFLQKSLIEILEENRKFAGNRIVQTQLMSDLLVGVRVAMTLVQKVQGPQGSLWND
                     SSSPIWQSMCGLLSIFTKFLNDDDLLQTVESTSGLAVILFIKTMFRPSEKLPGLISSL
                     LLRSAECTSIPEWLMNSCRSLCCTDVPASTLLFLCQGTLAMLDWQDGSMGPSGEALLL
                     DIVHVLFTLSSQIKESTLDMFLSRILASWTSSAIQILESGSSGLKGHLNGDSCVPRRL
                     LEYVYTHWEHPLDALRHQTKVMFRNLLQMHRLTMEGADLATDPFCLELTKSLLQLEWH
                     IKGKYACLGCLVETLGIEHILAIDKTIPSQILEVMGDQSLVPYASDLLETMFKNHKSH
                     LKSQTVTNTWMDKWHETWVFPVLSVLCGGNLDQRSYVIDYYLPRILNYSPESLHYMVH
                     ILQASTDTGTGSCNHRGALGALMACLRTARAHGHLQSATQAWENLVCSARVKQGLIHQ
                     HCQVRIDTLGLLCESNRSTEVVSTEEMQWVQFFITYNLNSQSPGVRQQICSLLKKLFC
                     RIQESSQVLYKLEQRKSTPDSENGSIREQPSVTLQQYKNFMSSVCNILFEALFPGSSY
                     STRFSALTILGSVAEVFPDPEGNIQTVYQLSHDIDAGRYQILMECFTSTFEEVKTLAF
                     DLLMKLSSVTAGQFQDSEKLQDLFQAALELSTSTKPYDCVTASYLLNLLIRQDALPAV
                     LSASSPQQLTRGAGETSAVLERNTLVVIKCLMENLEDEISQAENSLLQAASSFPMYGR
                     VHCITRAFQRLPLNDLRLASEWRPLLGRLLLLSYRLSTVVAPVIQSSSPEGLIPVDTD
                     SASASRLQLILNEIQPRDTNDYFNHTKILKECDSFDLEDLSTSVSNIDSSAEVKGKEE
                     KACDVTAQMVLACCWRSMKEVALLLGTLCQLLPVQPGPESSNVFLTVQQVKEIGDYFK
                     QHLLQSRHRGAFELAYTGFVKLTEILNRCSNVSLQKLPEQWLRSVLEEIKGSDPSSKL
                     CATRRSAGIPFYIQALLASEPKKSRMDLLKITMRELISLALSADDSKGRVPQVHALNI
                     LRALFRDTRLGENIIPYVAGGAKAAILGFTSPVWAVRNSSTLLFSSLITRVFGVKRGK
                     DEVSKTNRMTGREFFSRFPELYPFLLKQLETVASTVDSELGEPDRHPGMFLLLLVLER
                     LYPSPMDGTSSALSLAPFVPFIIRCGRSPIYRSREMAARALVPFIMIDQIPSTLCALL
                     NSLPNSTDQCFRQNHIHGTLLQVFHLLQAYITDCRHRTNADFLQELSDVTACTKAKLW
                     LAMSLPFSVQFFPLV"
ORIGIN      
        1 cttcgccggg gaccggtttt tggatcgcgc accacgttac aagccgcagg gacgcggtag
       61 acttgacggg cttccgggtc tcgtccagag gtggcgacgc tttgcagacg tcctcgggca
      121 cgaggagaaa ctctccactg gaccactgcc tcaagttctt ccttcttgca gagcgctgtt
      181 catcctgtgt aagatgggtg tgaagaagaa aagagaaatg caggttgctg cgctgactgt
      241 ctgtcatcag gacatggaaa ctttgagatc ttttgctgat atggaaggga aaaatctagc
      301 ctctttgctg ttacattgtg tacagctcac agatggagtg tcacaaatcc actctattaa
      361 acagattgtg cctctcttgg agaaggtcga taaaaacggt gtgtgcgatc ctgctattca
      421 gagttgtttg gatattctag caggcattta tttttccttg actctgaaga accccttgaa
      481 gaaagttttg gccagctcac tcaatggcct acctgaggtt tttctaactc aggcaacaca
      541 cagttttact tttcatcttc aagaagaatt agatactgct gacttatatt cttatagaaa
      601 agtaatggat aacatatctt cctgcatgga gaactttaac ctgggtagag caagtgtggt
      661 taatctgctt aaagatgtgc ttcattttct gcagaagagt ttaattgaaa tcctggaaga
      721 aaacaggaag tttgctggaa atcgtattgt tcaaacacag ttaatgagtg acttgctggt
      781 aggtgttaga gttgccatga cattggtaca gaaagtacag gggccccagg gcagcctctg
      841 gaatgactcc agctcaccca tctggcagag tatgtgtggc ttgctgagca tcttcaccaa
      901 gttcttaaat gacgatgacc tactgcagac tgttgagagt acatctggat tagctgttat
      961 tcttttcatt aagaccatgt tccggccatc tgaaaagctt cctggattga tcagcagctt
     1021 gcttctccgg tctgctgagt gcactagcat ccctgagtgg ctcatgaata gctgtaggag
     1081 cctttgctgt actgatgtgc cagcctcaac tctcttattc ctgtgtcagg gaacacttgc
     1141 tatgctggac tggcaggatg ggagcatggg ccccagcggg gaggctttgc tcttggatat
     1201 agtgcatgtt ttgttcacct tgagttcaca gattaaggag tccacattag atatgttcct
     1261 gtctagaatc ctggcatctt ggaccagttc agccatacag atccttgaat caggctcctc
     1321 aggcttaaag ggtcatctga acggggactc atgcgtacct aggagacttc tggagtatgt
     1381 ctacacacac tgggagcacc cgttagacgc tctgagacat caaaccaaag tcatgttcag
     1441 gaatctcttg caaatgcacc ggctcactat ggaaggggca gatttggcca ctgacccctt
     1501 ctgtctggag ttgactaaga gtcttctgca gctggaatgg cacattaaag ggaagtacgc
     1561 ttgccttggc tgtttggtgg agactcttgg aattgaacat attttggcaa tagataaaac
     1621 cattccatct caaattctag aggtgatggg agaccagtca ttggtacctt atgcaagtga
     1681 cctcttggaa accatgttta aaaatcataa gagccatttg aagtcccaaa ctgtcaccaa
     1741 tacctggatg gacaagtggc atgagacttg ggttttccct gtcctttctg tactgtgtgg
     1801 aggaaacttg gatcagagat cttatgtgat tgattattac ctgccacgga tactgaatta
     1861 cagccccgag agcctgcact acatggtgca cattcttcag gcatctactg atactggaac
     1921 tgggtcttgt aatcacagag gagctctggg agctttgatg gcgtgtctcc gaacagctag
     1981 agctcatgga catcttcagt ctgcaactca ggcctgggag aaccttgtgt gcagtgcaag
     2041 ggtaaagcaa ggcttaattc accaacactg ccaagtgcgg atagatacac taggcttgct
     2101 ttgtgaaagt aatcggagta cagaagtggt ctctacagaa gaaatgcagt gggttcagtt
     2161 ttttatcact tacaacctca acagccagtc tccaggggtg cgccagcaga tttgctcact
     2221 ccttaaaaag ttgttttgca ggatacaaga aagttcacag gtactttata aattggaaca
     2281 gagaaaatct acacctgact cagagaacgg gtccatcaga gagcagcctt ctgtcacttt
     2341 acagcagtat aagaatttca tgtcgtctgt ttgcaacatt ctctttgaag cattgtttcc
     2401 tgggtcttcc tactcgacta gattttcagc tttaactatc ttaggatcag tagctgaagt
     2461 gtttcctgat ccagaaggta acatccaaac agtgtatcag ctgagtcatg atattgatgc
     2521 tggccgttac caaatactta tggagtgttt cactagtact tttgaagaag tgaaaacctt
     2581 agcatttgat cttctgatga agctgtcgtc agtaacagct ggacagttcc aggattctga
     2641 gaagctgcaa gacctgttcc aggcagcgct ggaactcagc actagcacca agccttatga
     2701 ttgtgtgaca gcctcctacc tgctgaactt gctgatacgg caggatgctc tgccagccgt
     2761 cctgtctgcc tcttccccac agcagctcac acgtggagca ggagagacgt ctgctgtgct
     2821 ggaaaggaac acattagtgg ttattaaatg cttgatggaa aaccttgagg atgaaatatc
     2881 tcaagctgag aactctctgc ttcaggctgc gtcttcattt ccaatgtatg ggagagtcca
     2941 ctgtataaca agagcttttc agaggttgcc tctaaatgac ctgcggctgg cgagcgagtg
     3001 gaggccgctg ctggggaggc ttctgctgct gtcctacagg ctttccactg tggtggcccc
     3061 tgtcatccag agctcctctc ctgaaggcct catccctgtg gacactgact cagcgtcagc
     3121 aagccgcttg cagctcattc tcaatgagat ccagccacgg gatactaacg attacttcaa
     3181 ccacaccaaa atactgaaag aatgtgatag ctttgatttg gaggacttga gtaccagtgt
     3241 ctcaaatatt gatagttctg cagaagttaa aggtaaagaa gaaaaagcgt gtgacgtaac
     3301 tgctcagatg gtcctcgcgt gctgctggag gagcatgaag gaagtggctt tgcttctcgg
     3361 cacgctctgc cagcttctcc ctgtgcagcc tgggccagaa tcttctaatg tgttcctaac
     3421 agtgcagcag gttaaagaaa taggagatta ctttaaacaa caccttttgc agtccagaca
     3481 cagaggagca tttgaactgg cttatactgg ttttgtgaaa ctcactgaaa tattgaacag
     3541 gtgctctaat gtgagtctgc aaaagctgcc agagcagtgg ctgcggagcg ttctggagga
     3601 aattaaaggc agtgatccct catccaaact ttgtgctaca aggcgcagtg ctgggattcc
     3661 cttctacata caggcattgt tggcatctga accaaagaag agtagaatgg acttgctgaa
     3721 aataacaatg agggagctga tctccttggc tttgtctgca gatgactcaa agggcagagt
     3781 ccctcaggtt catgctttaa acattctccg agccttgttc agagacaccc gtctgggaga
     3841 aaacattatc ccctatgttg ctggtggagc taaggctgca attctgggct ttacatcccc
     3901 tgtctgggca gtgagaaatt catccacact tctctttagt tccttgatca caagagtttt
     3961 tggcgttaag agaggaaagg atgaagtttc caaaacaaat agaatgacag gaagagagtt
     4021 tttctctcgt ttcccagaac tgtacccatt tcttctcaaa cagttggaaa ctgtggccag
     4081 tacagtagac agtgaactgg gagagcctga tcgccaccct ggcatgttcc tcttactcct
     4141 ggtgttggag agactgtacc catcgccgat ggacggcaca tcatctgcgc tcagcttggc
     4201 cccttttgtt cctttcatta tcaggtgtgg tcgctcacct atttaccgct cccgggaaat
     4261 ggcagctcgt gcgttggtcc ccttcattat gatagaccaa ataccgagta ccctctgtgc
     4321 tctactgaac tcactcccca acagcactga ccagtgtttc cgacaaaacc acattcatgg
     4381 gacacttctg caagtttttc atctgttaca agcctacatt acagactgca gacacagaac
     4441 aaatgcagat ttcctgcaag agctgagtga tgtcactgct tgtaccaaag ccaaactctg
     4501 gctggccatg agccttccct tctcagtcca gttctttcct ctggtatgag ggcagcggtt
     4561 accagatccc ggtgtgaggg cagcggttac cagatccccg tgtgagggca gcggttacca
     4621 gatcccggtg tgagggcagc agttaccaga tccccgtgtg agggcagcgg ttaccagatc
     4681 cccgtgtgag ggcagcggtt accagatccc ggtgtgaggg cagcggttac cagatccccg
     4741 tgtgagggca gcggttacca gatccccgtg tgagggcagc ggttaccaga tccccgtgtg
     4801 agggcagcgg ttaccagatc cccgtgtgag ggcagcggtt accagatccc ggtgtgaggg
     4861 cagcggttac cagatcccgg tgtgagggca gcggttacca gatcccggtg tgagggcagc
     4921 ggttaccaga tccccgtgtg agggcagcgg ttaccagatc cccgtgtgag ggcagcggtt
     4981 accagatccc cgtgtgaggg cagcggttac cagatccccg tgtgagggca gcggttacca
     5041 gatccccgtg tgagggcagc ggttaccaga tcccggtgtg agggcagcgg ttaccagatc
     5101 ccggtgtgag ggcagcattt accagatccc ggtgtgaggg cagcggttac cagatcccgg
     5161 tgtgagggca gcatttacca gatcccggtg tgagggcagc atttaccaga tccccgtgtg
     5221 agggcagcat ttaccagatc ccggtgtgag ggcagcggtt accagatccc cgtgtgaggg
     5281 cagcggttac cagatcccgg tgtgagggca gcggttacca gatcccggtg tgagggcagc
     5341 ggttaccaga tccccgtgtg agggcagcgg ttaccagatc cccgtgtgag ggcagcggtt
     5401 accagatccc ggtgtgaggg cagcagttac cagatcccgg tggggtggaa atcttgccca
     5461 ggtcaggaag caagtgagat tcagaatgag ccccgtcctg ggaagggatg tcacaacatt
     5521 gtctagggat gtcacaacat tgtctaggga tgtcacaaca ttgtctaggg atgtcacaac
     5581 attgtctagg gatgccacaa cagggtgcag tccaggcccc ttggatggtc ctcctgctgc
     5641 gcttgctgtc ttcaggctgc agctctgctg tcctagcagt cacaggctcc accctaacag
     5701 aaagaacttt gaaaagctct ctcaagcagg actcagagga aacggcttgt ttaccttggc
     5761 tgtgacttgg gattacaatt atattgggct tcagtttttt cagaagtggt ttgttatctt
     5821 gtgtttccct cagccataaa agagtaaata tgtattggat gttcctttt
//
