LOCUS       NM_009359               4317 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus testis expressed gene 9 (Tex9), mRNA.
ACCESSION   NM_009359 XR_105291 XR_108119
VERSION     NM_009359.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4317)
  AUTHORS   Tamplin,O.J., Kinzel,D., Cox,B.J., Bell,C.E., Rossant,J. and
            Lickert,H.
  TITLE     Microarray analysis of Foxa2 mutant mouse embryos reveals novel
            gene expression and inductive roles for the gastrula organizer and
            its derivatives
  JOURNAL   BMC Genomics 9, 511 (2008)
   PUBMED   18973680
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4317)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   3  (bases 1 to 4317)
  AUTHORS   Chen,L., Sato,M., Inoko,H. and Kimura,M.
  TITLE     Molecular cloning and analysis of novel cDNAs specifically
            expressed in adult mouse testes
  JOURNAL   Biochem Biophys Res Commun 240 (2), 261-268 (1997)
   PUBMED   9388464
  REMARK    Erratum:[Biochem Biophys Res Commun 1998 May 8;246(1):299]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY240124.1, AK008505.1 and AC111135.10.
            
            On or before Jul 27, 2011 this sequence version replaced
            XR_105291.1, XR_108119.1, NM_009359.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR6116558.110791.1, AK008505.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139, SAMN01164142
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3                 BY240124.1         1-3
            4-1266              AK008505.1         2-1264
            1267-4317           AC111135.10        123960-127010       c
FEATURES             Location/Qualifiers
     source          1..4317
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 40.08 cM"
     gene            1..4317
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /note="testis expressed gene 9"
                     /db_xref="GeneID:21778"
                     /db_xref="MGI:MGI:1201610"
     exon            1..34
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /inference="alignment:Splign:2.1.0"
     CDS             8..1171
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /note="testis-expressed sequence 9 protein;
                     testis-specifically expressed protein 1"
                     /codon_start=1
                     /product="testis-expressed protein 9"
                     /protein_id="NP_033385.2"
                     /db_xref="CCDS:CCDS40685.1"
                     /db_xref="GeneID:21778"
                     /db_xref="MGI:MGI:1201610"
                     /translation="MAGRSVRVPRRGSAGTQSRGQLAAGRDLLAREQEYKRLNEELEA
                     KTADLVRQAEEVIREQQEVRARPFSALTTSCKEEGGSSSRDLLSSEGTHPWTETKPKT
                     KNTGPVNKIQNRLHSADKERKTNSSAKLKYPDAQTANDVAIPDDFSDFSLAKTISRIE
                     GQLDEDGLPECAEDDSFCGVSKDIGTEAQIRFLKAKLHVMQEELDSVVCECSKKEDKI
                     QDLKSKVKNLEEDCVRQQRTVTSQQSQIEKYKNLFEEANKKCDELQQQLSSVERELES
                     KRRLQKQAASSQSATEVRLNRALEEAEKYKVELSKLRQTNKDITNEDHQKIEVLKSEN
                     KKLERQKGELMIGFKKQLKLIDILKRQKMHIEAAKMLSFSEEEFMKALEWGSS"
     exon            35..114
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /inference="alignment:Splign:2.1.0"
     exon            115..178
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /inference="alignment:Splign:2.1.0"
     exon            179..258
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /inference="alignment:Splign:2.1.0"
     exon            259..304
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /inference="alignment:Splign:2.1.0"
     exon            305..387
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /inference="alignment:Splign:2.1.0"
     exon            388..566
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /inference="alignment:Splign:2.1.0"
     exon            567..649
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /inference="alignment:Splign:2.1.0"
     exon            650..823
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /inference="alignment:Splign:2.1.0"
     exon            824..958
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /inference="alignment:Splign:2.1.0"
     exon            959..1093
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /inference="alignment:Splign:2.1.0"
     exon            1094..4317
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1251..1256
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /note="hexamer: AATAAA"
     polyA_site      1271
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /note="major polyA site"
     regulatory      2627..2632
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /note="hexamer: ATTAAA"
     regulatory      2635..2640
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /note="hexamer: AATGAA"
     polyA_site      2652
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
     polyA_site      2658
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
     regulatory      3773..3778
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
                     /note="hexamer: AATAAA"
     polyA_site      3803
                     /gene="Tex9"
                     /gene_synonym="Gm19407; tsec-1"
ORIGIN      
        1 ggtaaagatg gcggggcgaa gtgttagagt gccgagacgc ggttctgcag gtacccagtc
       61 gcgcgggcag cttgcagctg gacgggacct cctcgcccgg gaacaagagt acaagcgttt
      121 aaatgaagaa ttggaggcaa aaactgctga tctggttcga caagctgagg aagtaataag
      181 agagcagcaa gaagtgcgag ccaggccttt ctcagcacta actacatcat gcaaagagga
      241 aggtggttcc agttcgagag atctgttgtc atctgaaggg actcatccat ggacagaaac
      301 caagccaaag accaaaaaca ctggtcctgt aaacaagatt caaaacagac tccactctgc
      361 agataaagaa aggaaaacaa attcaagtgc taaactgaaa tatcctgatg cgcagactgc
      421 caacgatgtg gccatcccag acgatttctc agacttctcc cttgccaaga cgattagcag
      481 gattgaaggg cagctggacg aggacggctt gcccgagtgt gcagaggacg acagcttctg
      541 tggtgtgagt aaggacattg gcacagaggc tcagatccga tttctaaagg ccaagctcca
      601 tgtgatgcaa gaggagctgg acagcgttgt gtgtgagtgc agtaagaagg aggataaaat
      661 tcaggactta aagtccaagg tgaaaaattt ggaagaagac tgtgtgcgac aacagcgaac
      721 agttacatcc cagcaatccc aaatagaaaa atataagaat ctttttgaag aagcaaataa
      781 aaaatgtgat gaattacagc agcagctgtc atcagtagaa cgggaattag aaagtaaaag
      841 aagattacaa aaacaggctg cctcaagtca gagtgccaca gaggtccgtc tgaatcgagc
      901 tcttgaagaa gcagaaaagt ataaagtgga gctgagtaaa ctcaggcaaa ctaacaagga
      961 tattacaaat gaagaccatc aaaaaattga agtgttgaaa tcagaaaaca aaaaactaga
     1021 aagacaaaaa ggagaattaa tgatagggtt caagaagcag ttgaaattga ttgacatttt
     1081 gaaaaggcag aagatgcata ttgaagctgc caagatgctg tctttcagcg aggaggagtt
     1141 tatgaaggct cttgagtggg gcagttcatg agtgagcaac tgcaatggga tgctcatttg
     1201 atatcaagtg tagtcttctt gctgttcatg agtaataaga acatttgtga aataaaagag
     1261 ttagataatg acctggtgaa ataaacagaa tgtttgggag gatgttggaa gacaaagcca
     1321 gacggcaact ctggcctgac ttcctttttc attagtagtt atgaaataag gaagcaagac
     1381 ttcgactctt aattatcttt tatgacctac tagacctggg agaggacaga gaagatggca
     1441 gggcaagatt ctggagatcc ccagctgcag ctgctgagtc tgctgcaggc ctgtgtgctg
     1501 tgcacggctg ctgcatccaa cagcagtgat gcaggctggg accagaggct gttgtgcagg
     1561 ggctatgtgt gtgttctctt gttcagtggt tgtgcacaca ggagacaaaa tagagatgga
     1621 aacagggaca cacttactgt accaaaggat cataagtata agtgattatg aacaatttgg
     1681 ataacacaga atgtttaatt tctggagata tactaccaag aattaactaa gatagaaaaa
     1741 cctggacaca cccatagtaa gaagggagat caagtagatc aaatccataa taaaaagctc
     1801 tattgggagc tggtgtgatg gcacagtggt tacggagggc attgctgcta ttgcagagga
     1861 cccaaattca gttcccagca cccacagggc tgctcacagc cacctttaac tccagctcta
     1921 ggggttcaag gcccttttct ggcctccatt gacctctgca caaacgggat acatagacat
     1981 gcactcaggg atacacataa aataaaaata aatatttaaa aaaataaatc tcctcaaaga
     2041 aaaacacagg acctgacggc ttcactgcca gcttctacca aacatttaaa gattggcagt
     2101 tcttctcaaa ctattccaaa acagtgacat aaagacattt ccacattcaa gtatgctcat
     2161 cctgataccg aaatcatgca agagcaacaa acaaaaccaa gccaacaact cccatagtcc
     2221 agtatctctg atcaactcag atgcagaaat gctccccaga acaccagcaa acaacttcta
     2281 tacatcaaaa gatccctcat cacgatgcag tgggattcaa cctagatgat ttgacattca
     2341 aatcagtaag catgtcacac tgacagaatg aagaaaaggt ttgtaaattc agtagagaga
     2401 aaagcccaag actgagcaac acttcatgac aaaactgtca gcaaagtagg ttacagaagg
     2461 aatgtgctgt aacgtgagtc atatgtgaca aacccacagc caacacactg aacagggaaa
     2521 agctgaagct tagccccacg tatttgtgta tccaatcctt ttatattgtg acatgatatt
     2581 gtgatcttca gagttcatac tgaaagacta tgcaacagaa ttacaaatta aaaaaatgaa
     2641 ttttgtataa cattttaagt ttgctatttg tagtggtctg cattaatcac atcccaggtt
     2701 gcccatccct ataagacctg aaatcagaca gttaagagca atggctaggc agagagcaca
     2761 cgcctttaat cccagcactc aggaggtaga agcaggaaga tttctgtgag ttcgaggtta
     2821 gcctggacag ccaggcccac acagtgaaac tctgtttcca ccctctccaa aacctcccca
     2881 aaagagcact agttgctctt gcagagaacc caggtttggt tcccaccgtg cgtatggtcc
     2941 cagtcatctg taactccagt tccagaggct aggacaccgt cttgaggcat tcttgagctc
     3001 tgcagacatc tagtacacat atatgcaggc aagcacatgt aaaatttttt tttttttttt
     3061 ttggtttttc gagacagggt ttctctgtgt agccctggct gtcctggaac tcgctctgta
     3121 gaccaggctg gcctcgaact cagaaatccg cctgcctctg cctcctgagt gcgccaccac
     3181 gcccggctcg taaaatattt ttttaatctt agcagaaatg ctaatcaaat ataaccagca
     3241 agagaaagaa aaatatgaag tctgggaaca aagaagttgg gttgtccatt atgaaaaatg
     3301 gttgagatca aatcaactga gtaaagttac aaggtaagaa aaccaatagg cacacatcag
     3361 gagactgaca gcacaaatga aagccttgag ctgtagctca gtggcagagc acttacagaa
     3421 catgtatgag accccagatc cagtccctag catagcacaa gccaaagtag tggcattttt
     3481 atacatcagt ggcagaatat cagagaaaat ctacagtacc ccatttgtag tatctaacaa
     3541 aaacatttta gactaaattt taccaaggag attgaagatg gctgtattga aaactacaaa
     3601 atattgatga cagaaacttg agagaagtaa atagctgttt aatgtttatg aattagaaaa
     3661 gtgtcttaca tactgcccag agaggtctgt cgtctccctg tagtgagctg ctgtgtttgg
     3721 cctctggttc tgtggaattc tgtgatatga tggcatcata gaatgcatag taaataaaaa
     3781 tgactaattc tgcagttaaa gtactaatgt gtttaatttt tgtcaaactg tatacatgat
     3841 gaaataggag gatgttttag aacatgcaga tagaccaggg cctactgtca ccaactgtaa
     3901 aacagcagtt acgctgacat ctagtggcag catctgagca ctccaggtct cgcccggcct
     3961 tgctatgaag actcggcttc agactccatc ccttttctga taggccttcc tgaactcttc
     4021 accaagcatg tcaacatcgt cttctctttt aaacactccc tacaaagaag cattttgttg
     4081 gttactttga acattagagt atttcactga attttcttag gactaacaca cacagacatg
     4141 aagctaatga agaaatgcag ataatgagat cgattattga aacttaattt taaaatatca
     4201 gaaagactat ggcttcaagt atatctgaat atcactgagc tgctcccagt tcctgattac
     4261 tcaacctcag agtattaagc tgtgctaggg gctgctgtgc cttatgctct aactccg
//
