LOCUS       NM_001356297            1208 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus testis expressed 30 (Tex30), transcript variant 3,
            mRNA.
ACCESSION   NM_001356297 XM_006496314
VERSION     NM_001356297.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1208)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC123800.4.
            
            On Sep 28, 2017 this sequence version replaced XM_006496314.3.
            
            Transcript Variant: This variant (3) differs in the 5' UTR compared
            to variant 1. Variants 1, 2, and 3 encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422601.982551.1,
                                           SRR17784647.1358165.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-114               AC123800.4         78459-78572         c
            115-268             AC123800.4         75979-76132         c
            269-499             AC123800.4         67492-67722         c
            500-551             AC123800.4         64607-64658         c
            552-757             AC123800.4         63974-64179         c
            758-1208            AC123800.4         62744-63194         c
FEATURES             Location/Qualifiers
     source          1..1208
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 23.54 cM"
     gene            1..1208
                     /gene="Tex30"
                     /gene_synonym="1700029F09Rik; 3110030D08Rik"
                     /note="testis expressed 30"
                     /db_xref="GeneID:75623"
                     /db_xref="MGI:MGI:1922873"
     exon            1..114
                     /gene="Tex30"
                     /gene_synonym="1700029F09Rik; 3110030D08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            115..268
                     /gene="Tex30"
                     /gene_synonym="1700029F09Rik; 3110030D08Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             254..931
                     /gene="Tex30"
                     /gene_synonym="1700029F09Rik; 3110030D08Rik"
                     /note="testis-expressed sequence 30 protein"
                     /codon_start=1
                     /product="testis-expressed protein 30"
                     /protein_id="NP_001343226.1"
                     /db_xref="CCDS:CCDS48249.1"
                     /db_xref="GeneID:75623"
                     /db_xref="MGI:MGI:1922873"
                     /translation="MSHTEVKLKIPFGNKLLDAVCLVPNKNIAYGIILTHGASGDMNL
                     PHLMSLASHLASHGFFCLRFTCKGLNIVHRIKAYKAVLNYLKTSGEYKLAGVFLGGRS
                     MGSRAAASVMCHTEPDDADDFVRGLICISYPLHHPKQQHKLRDEDLFRIKDPVLFVSG
                     SADEMCEKNLLEKVAQKMQAPSKIHWIEKANHSMAVKGRSTNDVFKEINTQILFWIQE
                     ITEMDKK"
     exon            269..499
                     /gene="Tex30"
                     /gene_synonym="1700029F09Rik; 3110030D08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            500..551
                     /gene="Tex30"
                     /gene_synonym="1700029F09Rik; 3110030D08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            552..757
                     /gene="Tex30"
                     /gene_synonym="1700029F09Rik; 3110030D08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            758..1208
                     /gene="Tex30"
                     /gene_synonym="1700029F09Rik; 3110030D08Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      937..942
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tex30"
                     /gene_synonym="1700029F09Rik; 3110030D08Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      961
                     /gene="Tex30"
                     /gene_synonym="1700029F09Rik; 3110030D08Rik"
     regulatory      1184..1189
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tex30"
                     /gene_synonym="1700029F09Rik; 3110030D08Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1208
                     /gene="Tex30"
                     /gene_synonym="1700029F09Rik; 3110030D08Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcagtagcgg gccgcgctga cgggggcggc gaggcggtcg cttcgagcgt gttagttcgc
       61 tccctgaaga gagtgagggc ggttgggcgc tggcggtcac tcgtgcgttc gctgattttg
      121 aatgtgcaca ttcctagttt ggggtcatat ccttgtctga caactcacct tttacaacag
      181 aatctgcttt tcagagagat gccctttgct tctcagatgt agtgcacctt acgcttattt
      241 ttcaacagtg aaaatgagtc atacagaggt taaattaaaa ataccttttg gaaataaatt
      301 actggatgcc gtttgtttgg tacctaacaa gaacatagca tatggaataa ttcttacaca
      361 tggagcatca ggagacatga atcttcctca tctgatgtca ctggcatccc accttgcatc
      421 tcatgggttt ttttgcctga gatttacttg caaaggcctt aatattgtac atagaattaa
      481 ggcatataaa gcagttttga attacctgaa gacctcagga gaatacaaac ttgctggtgt
      541 ttttcttgga ggtcgttcaa tgggctcaag ggcagctgct tctgtgatgt gtcatactga
      601 gccagatgat gctgatgatt ttgttcgagg tctcatttgt atttcttacc cactgcacca
      661 tccaaagcag cagcataaac tcagagacga agatctcttt cgtataaagg atcctgtact
      721 gtttgtgtcg ggctcagcag atgaaatgtg tgaaaagaac ttgttggaga aagtagcaca
      781 gaaaatgcaa gcccctagta aaattcattg gattgaaaag gcaaatcatt ccatggcagt
      841 gaaaggacgg tctacaaatg atgtattcaa agaaataaac acacagatct tgttttggat
      901 ccaagaaatc actgaaatgg acaagaaata attgtcatta aaagccatgt tctgaataaa
      961 agtacggttg gttaatttga taaagtatac ctctcactca gcattgtgag atgtatttca
     1021 gactaatgtt ctttaatgtt gccctatttt ttaaacattg tatcgtgaaa atatccttta
     1081 caagatgtct tttgaaagca ctgttatagt tatatgaaga taatgtacaa atattgaagg
     1141 ttgtctataa tttattttca ttagtatagt taagttttga aaaattaaac atttgcattt
     1201 tgttacaa
//
