LOCUS       NM_001195271            2243 bp    mRNA    linear   ROD 06-APR-2024
DEFINITION  Mus musculus TEX13 family member C1 (Tex13c1), mRNA.
ACCESSION   NM_001195271 XM_141720
VERSION     NM_001195271.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2243)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL671890.11.
            
            On Sep 2, 2010 this sequence version replaced XM_141720.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence because no single transcript was available for the
            full length of the gene. The genomic coordinates used for the
            transcript record were based on transcript alignments, including
            rat BC128763.1.
            
            CCDS Note: This CCDS representation is partially supported at the
            3' end by the mouse EST AV262385.1. The full-length nature is
            inferred based on mouse RNA-Seq data and the orthologous rat mRNA,
            BC128763.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.167880.1, AV262385.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2035              AL671890.11        35614-37648
            2036-2243           AL671890.11        37948-38155
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 23.58 cM"
     gene            1..2243
                     /gene="Tex13c1"
                     /gene_synonym="Gm362; Tex13c"
                     /note="TEX13 family member C1"
                     /db_xref="GeneID:637093"
                     /db_xref="MGI:MGI:2685208"
     exon            1..2035
                     /gene="Tex13c1"
                     /gene_synonym="Gm362; Tex13c"
                     /inference="alignment:Splign:2.1.0"
     CDS             172..1986
                     /gene="Tex13c1"
                     /gene_synonym="Gm362; Tex13c"
                     /note="testis-expressed sequence 13C protein;
                     testis-expressed protein 13C; TEX13 family member C-1"
                     /codon_start=1
                     /product="testis-expressed protein 13C-1"
                     /protein_id="NP_001182200.1"
                     /db_xref="CCDS:CCDS72373.1"
                     /db_xref="GeneID:637093"
                     /db_xref="MGI:MGI:2685208"
                     /translation="MAIEFGDHSSGFHHTEVIRFINNEVLKNGGSSEFYTTFRSRSWN
                     EIEDQLRTILVDPKVPRSLKRACTWSALALSVRVAARQRQQQARRVWRLQDQVGEHES
                     ASWTLVSELQRLREERDQAAAQLLCTQIILQEAMDEREILRGRLLQAKRSALPVVPER
                     GMEYGKTSLLSFEEKELGDLEFIGSQNMSHLEAQIPILSCLPGLSSPWVQAMDPFLQM
                     TMAHPVPLKAKFSLEFSFSTPVPCPALMDSEATATAMITGLPQIAPSGIQPSSLCVTL
                     ESQETIASALDQICPRQKECSEILQDVSHLADSISCCEGEGPEKPQGTSLHGDSSNNS
                     HKDNQAIPQIMAATEKKNLMMHQGTAAVEVNSNHSIKEEPVMPKGISSQGNKTSSTKK
                     KRPKISRRVVGLIESISHNTQCVSVTPQETHTQVNKTTSTLKTYPGNLLRKPDQGKIL
                     SCNQKEDSKTLQRLTDLGEGTRNCQKEDTFQQTTCLNAGVSPNEKKMPQGTGKNQSQR
                     QKEEPNSFQANHPRKCKSYLMNKYPKIQLATKQRVKQPEGIKSLESKQPQETKSSESK
                     QQEKPLSHRTSANCICPSSKTVNRSWYKGCYKCAKTSA"
     exon            2036..2243
                     /gene="Tex13c1"
                     /gene_synonym="Gm362; Tex13c"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagaaggaag gagaacagga ggagtagagg aagaaatgaa aaattgacaa gggctgaagt
       61 agaactgatt ccgaagggaa aggggtaact atttggtcac atgtgtggca gctgtattag
      121 taaccacagt ggaggttcat gagaatgtta catggctaag ctgcaacaac catggcaatt
      181 gaatttggag accatagcag cggcttccac catactgaag taatcagatt cattaataat
      241 gaagtcctta agaatggagg gagttctgaa ttctatacga cctttcgctc tcggtcttgg
      301 aatgaaatag aagatcagct tcgtaccatc cttgttgacc ccaaagtgcc acgctccctc
      361 aagagggctt gtacctggag tgctttggct ttgagtgtga gagtggctgc caggcaacgc
      421 cagcagcagg cgcggagagt ttggaggttg caggaccagg tgggagagca tgagtcagct
      481 tcctggactc tggtctctga actacagagg ttgcgagaag agagggacca ggcagctgct
      541 caacttttgt gtacacagat tatcctccag gaggcaatgg atgagcggga aatacttcgt
      601 gggaggctgc tacaagcaaa gagatctgca ctgcctgttg tgcctgaacg tggaatggaa
      661 tatggtaaaa catcactgtt gtcgtttgag gaaaaggagc tgggagacct ggaatttata
      721 gggtcccaga acatgtccca tttggaggcc cagataccaa tcttgtcctg cctgcctgga
      781 ctttcaagtc cttgggtcca agcaatggat ccctttcttc aaatgactat ggcacatcca
      841 gtaccactca aagcaaaatt ctccttggaa ttctcatttt caacacctgt accatgtcca
      901 gcattaatgg actcagaagc aacagcaaca gccatgatca caggcttacc tcagatagct
      961 ccttcaggaa tccaaccatc tagcttgtgt gttacattgg agtcccaaga aacaatagct
     1021 tctgctttgg accaaatctg ccctaggcag aaggaatgct ctgagatcct ccaggatgta
     1081 agtcacctgg cagacagcat aagctgctgt gaaggagaag gtccagagaa acctcaagga
     1141 acatctctcc atggggacag cagcaacaat agccacaaag ataatcaggc cataccccag
     1201 ataatggctg ccactgagaa gaaaaatcta atgatgcacc agggaacagc tgcagtggag
     1261 gtcaacagta accacagcat aaaggaagaa ccagtaatgc ccaaagggat atcttcccag
     1321 gggaacaaaa ccagctccac caagaagaaa cgtccaaaaa tttcccggag ggtggttggc
     1381 ttgatagaga gcatcagcca caacacccaa tgtgtttctg taactcccca ggagacacat
     1441 actcaagtga acaaaaccac ctctaccctg aaaacctatc cagggaatct cttgaggaag
     1501 cctgaccagg gaaagatact tagctgtaac cagaaagagg attcaaagac actacagagg
     1561 ctgactgacc tgggagaagg aaccagaaat tgccagaaag aagacacttt tcagcagacg
     1621 acatgcctga atgctggtgt gagtcctaat gagaagaaaa tgccacaagg gactggcaag
     1681 aaccagagcc agagacagaa ggaagagcca aacagcttcc aagcaaacca cccgagaaaa
     1741 tgtaaaagtt atttaatgaa taaataccct aaaatccaac tggctacaaa gcaaagggtc
     1801 aagcaacctg aagggataaa atctttagaa tctaagcaac ctcaagagac aaaatcctct
     1861 gaatccaagc aacaagaaaa acccctctca caccgtactt cagcgaattg catctgtcca
     1921 tcaagtaaaa ctgtgaatcg ctcatggtac aagggttgct ataaatgtgc aaaaacaagt
     1981 gcttaacttc aaagaaaaga tgttgaccca taacaaactc attgatttca ggaagatggt
     2041 ggagttagaa tggctgttcc tgtttgtacg acatctctaa gaagctaatc aggaatcctc
     2101 taaaaaaatt tcttcactct tttcttctta atttcctttt cttaaaaggc atacatttga
     2161 ccggtagcag ccatatgatt tcacagcagc aatatgattt tacaataaaa tcaatgtgga
     2221 atttgtaaca ccacatttcc ttg
//
