LOCUS       NM_031381               2128 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus testis expressed 13B (Tex13b), mRNA.
ACCESSION   NM_031381
VERSION     NM_031381.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Lu,Y., Oura,S., Matsumura,T., Oji,A., Sakurai,N., Fujihara,Y.,
            Shimada,K., Miyata,H., Tobita,T., Noda,T., Castaneda,J.M.,
            Kiyozumi,D., Zhang,Q., Larasati,T., Young,S.A.M., Kodani,M.,
            Huddleston,C.A., Robertson,M.J., Coarfa,C., Isotani,A.,
            Aitken,R.J., Okabe,M., Matzuk,M.M., Garcia,T.X. and Ikawa,M.
  TITLE     CRISPR/Cas9-mediated genome editing reveals 30 testis-enriched
            genes dispensable for male fertility in micedagger
  JOURNAL   Biol Reprod 101 (2), 501-511 (2019)
   PUBMED   31201419
REFERENCE   3  (bases 1 to 2128)
  AUTHORS   Wanner,N., Vornweg,J., Combes,A., Wilson,S., Plappert,J.,
            Rafflenbeul,G., Puelles,V.G., Rahman,R.U., Liwinski,T., Lindner,S.,
            Grahammer,F., Kretz,O., Wlodek,M.E., Romano,T., Moritz,K.M.,
            Boerries,M., Busch,H., Bonn,S., Little,M.H., Bechtel-Walz,W. and
            Huber,T.B.
  TITLE     DNA Methyltransferase 1 Controls Nephron Progenitor Cell Renewal
            and Differentiation
  JOURNAL   J Am Soc Nephrol 30 (1), 63-78 (2019)
   PUBMED   30518531
REFERENCE   4  (bases 1 to 2128)
  AUTHORS   Shin,Y.H., Choi,Y., Erdin,S.U., Yatsenko,S.A., Kloc,M., Yang,F.,
            Wang,P.J., Meistrich,M.L. and Rajkovic,A.
  TITLE     Hormad1 mutation disrupts synaptonemal complex formation,
            recombination, and chromosome segregation in mammalian meiosis
  JOURNAL   PLoS Genet 6 (11), e1001190 (2010)
   PUBMED   21079677
  REMARK    Erratum:[PLoS Genet. 2011;7(2). doi:
            10.1371/annotation/8aa656b6-55f7-4795-a441-cf243ea62175]
            Publication Status: Online-Only
REFERENCE   5  (bases 1 to 2128)
  AUTHORS   Wang,P.J., McCarrey,J.R., Yang,F. and Page,D.C.
  TITLE     An abundance of X-linked genes expressed in spermatogonia
  JOURNAL   Nat Genet 27 (4), 422-426 (2001)
   PUBMED   11279525
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AF285576.1.
            
            [WARNING] On Aug 20, 2024 this sequence was replaced by
            NM_031381.3.
            
            On Nov 2, 2002 this sequence version replaced NM_031381.1.
            
            Sequence Note: This transcript is a candidate for nonsense-mediated
            decay (NMD), and may be an evolving pseudogene. It is represented
            as protein-coding because the syntenic human locus (geneID:56156)
            is thought to express a protein and the proteins are partially
            conserved.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF285576.1, BC116863.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 61.5 cM"
     gene            1..2128
                     /gene="Tex13b"
                     /gene_synonym="4933403J23Rik; Tex13"
                     /note="testis expressed 13B"
                     /db_xref="GeneID:83555"
                     /db_xref="MGI:MGI:1890544"
     exon            1..62
                     /gene="Tex13b"
                     /gene_synonym="4933403J23Rik; Tex13"
                     /inference="alignment:Splign:2.1.0"
     exon            63..547
                     /gene="Tex13b"
                     /gene_synonym="4933403J23Rik; Tex13"
                     /inference="alignment:Splign:2.1.0"
     CDS             95..655
                     /gene="Tex13b"
                     /gene_synonym="4933403J23Rik; Tex13"
                     /note="testis expressed gene 13"
                     /codon_start=1
                     /product="testis-expressed protein 13B"
                     /protein_id="NP_113558.1"
                     /db_xref="CCDS:CCDS41152.1"
                     /db_xref="GeneID:83555"
                     /db_xref="MGI:MGI:1890544"
                     /translation="MNCEDVTTGFRHARVLMFINEQMAKHSRGPEFYLENLTLSWEEV
                     EEKLNVLLDGTEVPRDVQEACAWSSLALGVRFAFRQGQLQGRRVQWLHDFASLHRSAA
                     HALALDLKKLTDQHEIERKEAAYQLLLAHTKLAEVQRERDLMRLKLLHARFATHMRVV
                     RDYRGCQHQVQARMSTIIQPLNRNRP"
     exon            548..715
                     /gene="Tex13b"
                     /gene_synonym="4933403J23Rik; Tex13"
                     /inference="alignment:Splign:2.1.0"
     exon            716..2116
                     /gene="Tex13b"
                     /gene_synonym="4933403J23Rik; Tex13"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2035..2040
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tex13b"
                     /gene_synonym="4933403J23Rik; Tex13"
                     /note="hexamer: AATAAA"
     polyA_site      2057
                     /gene="Tex13b"
                     /gene_synonym="4933403J23Rik; Tex13"
                     /note="major polyA site"
     regulatory      2093..2098
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tex13b"
                     /gene_synonym="4933403J23Rik; Tex13"
                     /note="hexamer: AATAAA"
     polyA_site      2111
                     /gene="Tex13b"
                     /gene_synonym="4933403J23Rik; Tex13"
                     /note="major polyA site"
ORIGIN      
        1 gtgcggtctt gtgttcctgt cacttctgtc gccctttggt ttcaggactg ctcatctcac
       61 agggccagcc aagcccctag agcactcagc catcatgaat tgcgaggatg tcaccaccgg
      121 gttccgccat gccagggtgt taatgttcat caacgaacaa atggccaagc actccagagg
      181 cccggagttc tacctcgaga acctgaccct gtcctgggag gaggtggagg aaaagctcaa
      241 tgtcctcctg gacggtaccg aggtgcctcg ggatgttcag gaagcctgtg cctggagcag
      301 cctggccctg ggggttcgct tcgctttcag gcagggccag ttgcaggggc gcagagtgca
      361 gtggctgcac gacttcgcca gcctgcacag gtcagcggcg catgccctgg cattggacct
      421 gaagaagctc accgaccagc acgagataga acgcaaggag gcggcctacc agcttctttt
      481 ggcccacact aaactcgcag aggtgcagag agagcgagac ctgatgagac tgaagctact
      541 acacgcaaga tttgccaccc atatgagagt tgtgcgagac tacagaggat gccagcacca
      601 ggtacaagca agaatgtcta caattataca gcctcttaac agaaatcgtc cctagtcccc
      661 agagggcaga accagagaca gatctgaaca ggaaacttct gccaactgct ccaagtcctc
      721 aggtagaagg aaggcgaagg actgtatctg atccggactg agacacaact ggaagagtcc
      781 tatctcccag agactgtgaa cctggagaat acgaagctgt tgtggcccat gggacacctg
      841 tagcatcaga aatgtgactt cgggttgtct gttattggtg aggatacagc tgcctccagg
      901 attgcaggcc agatccctgt cctgcaattt tttgaacact ctttgggctt gcttatctcc
      961 ctctactgca gggtttccta acctcattgc acttgacatc tggattcgga tagttctttg
     1021 ctgtggggta ggaagtcctg tgtactgtag gcagtgcggc aaaaccagag ttgggaacaa
     1081 ctaagttgga aattgaaggc cttagcagtg tggacaaaaa ctcaaatagc caaggtcaca
     1141 gaggctgaag ctggcaaaag aaaaaaacaa aaaccacagt tctttaagac tggtgtttac
     1201 tttggatctt caagaagtta gggtggtggc agagtagaaa ccaaacggtc aggactgagg
     1261 ggaacctcta ccctctacaa cagtagtttc aacctttaat gtttcatctc atgtggtggt
     1321 gacccccaac cataaaatta ccttcactga ctggtacttc atatcatact atgatgaatt
     1381 ataatgtaaa tacctgtgtc tcccaaaggt cttaggtgac ccctgtgaaa ggcttgtttg
     1441 acctccatag gggtcacagc ccacaggctg agaactgcag ctttacaaga actctaggct
     1501 gcaaagggaa ggagtacagg aagcgccatg gatcctacag tgttagtttg tcagctagcc
     1561 aacatgcttg gcaaactaga ttggataaaa tctcgaacat ggcgtttaaa ctctgataaa
     1621 ggcagtaaga gttaaggtta ggtacttttt gagcaatttc ctcaaagata aaacattgca
     1681 acctgcagga aagctcatga agactcagta gtagaaacga gccattaaag gagaatgctt
     1741 taaatgaaag aaacaagaaa aaagatggtc ttatatagtg gatgggagga ctagccaata
     1801 gtattagaag gaaaacaaca cgatgaaagg gaccattgtt ttgtgtaaga taaaaacact
     1861 taaagttctt aggtatgtgc atgtatgctc tatgtaaata tgttacaaat ttatgtctat
     1921 aaaatctgta tttcagtaag cattgaaaag atatggaaaa gatatttagt gaacaggcag
     1981 ggaacagaag gcagtgtggt atggggggta tagaacagaa tacagccaag tttgaataaa
     2041 aggtttttct ttatgtactt ctgtgttttg aaagtaataa ggtgtttaca aaaataaaag
     2101 ttatttaccc acttgaaaaa aaaaaaaa
//
