LOCUS       NM_001163104            3101 bp    mRNA    linear   ROD 18-AUG-2023
DEFINITION  Mus musculus terminal nucleotidyltransferase 5D (Tent5d),
            transcript variant 1, mRNA.
ACCESSION   NM_001163104
VERSION     NM_001163104.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3101)
  AUTHORS   Cong J, Yang Y, Wang X, Shen Y, Qi HT, Liu C, Tang S, Wu S, Tian S,
            Zhou Y, He X, Wang L, Liu MF and Zhang F.
  TITLE     Deficiency of X-linked TENT5D causes male infertility by disrupting
            the mRNA stability during spermatogenesis
  JOURNAL   Cell Discov 8 (1), 23 (2022)
   PUBMED   35256600
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3101)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   3  (bases 1 to 3101)
  AUTHORS   Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen
            A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M,
            Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E,
            Mehmeti S, Dagand E, Schrinner S, Nurnberger A, Schmidt K, Metz K,
            Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe
            F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S,
            Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN,
            Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S,
            Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple
            CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P,
            Reymond A, Davidson DR, Dolle P, Antonarakis SE, Yaspo ML, Martinez
            S, Baldock RA, Eichele G and Ballabio A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB865956.1, AK133246.1 and AL669851.8.
            
            On Aug 22, 2012 this sequence version replaced NM_001163104.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CN686951.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-235               BB865956.1         5-239
            236-1486            AK133246.1         133-1383
            1487-2474           AK133246.1         1385-2372
            2475-2475           AL669851.8         83698-83698
            2476-3099           AK133246.1         2374-2997
            3100-3101           AL669851.8         84323-84324
FEATURES             Location/Qualifiers
     source          1..3101
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 47.62 cM"
     gene            1..3101
                     /gene="Tent5d"
                     /gene_synonym="Fam46d; Gm377"
                     /note="terminal nucleotidyltransferase 5D"
                     /db_xref="GeneID:213449"
                     /db_xref="MGI:MGI:2685223"
     exon            1..165
                     /gene="Tent5d"
                     /gene_synonym="Fam46d; Gm377"
                     /inference="alignment:Splign:2.1.0"
     exon            166..235
                     /gene="Tent5d"
                     /gene_synonym="Fam46d; Gm377"
                     /inference="alignment:Splign:2.1.0"
     exon            236..306
                     /gene="Tent5d"
                     /gene_synonym="Fam46d; Gm377"
                     /inference="alignment:Splign:2.1.0"
     exon            307..370
                     /gene="Tent5d"
                     /gene_synonym="Fam46d; Gm377"
                     /inference="alignment:Splign:2.1.0"
     exon            371..484
                     /gene="Tent5d"
                     /gene_synonym="Fam46d; Gm377"
                     /inference="alignment:Splign:2.1.0"
     exon            485..3101
                     /gene="Tent5d"
                     /gene_synonym="Fam46d; Gm377"
                     /inference="alignment:Splign:2.1.0"
     CDS             504..1676
                     /gene="Tent5d"
                     /gene_synonym="Fam46d; Gm377"
                     /EC_number="2.7.7.19"
                     /note="family with sequence similarity 46, member D"
                     /codon_start=1
                     /product="terminal nucleotidyltransferase 5D"
                     /protein_id="NP_001156576.1"
                     /db_xref="CCDS:CCDS53172.1"
                     /db_xref="GeneID:213449"
                     /db_xref="MGI:MGI:2685223"
                     /translation="MSEIRFSNLTWDHIVTLDRVLHEVIPIHGRGNFPTLEVKPKDII
                     HIVKDQLIKQGIVVKDTRLNGSTASYILASHNGISYKDLDIIFGVDIPSDEEFHVVKD
                     AVLSCLFDFLPKGVKKEKITLKTMKEAYVQKMVKICNNHDRWSLISLSNNNGKNVELK
                     FVNSLRRQFEFSVDSFQILLDSMLDFYSVPNAKLTKESCPVVVAESMYGDFQEAMIHL
                     KYKLISTRKPEEIRGGGLLKYSNLLVRDFKPACQTEIKTLERYMCSRFFIDFPDVAEQ
                     QKKIESYLHNHFIGEAKNKYDYLMTLHGVVNQSTVCLMGYERRQTLNMITLLALKVLG
                     EQNILPSTDNVTCFYQPAPYLVLEGGYPSYYVASGLPLVYFQPCHTVQFPVQNGMM"
ORIGIN      
        1 ctgcgctaaa cctggtccgg catcccaccg gacttctagt tctttctttt gtcaacctgg
       61 acgccgctta gccttccgcc cacctcgtac ctcagatttc acacagtcct ggtcgtccct
      121 catccctttc tctcagagct taagtcttaa agggtgaaga caaaggcact gtttgaagaa
      181 aattgttaag tggagaagta aaagattttt tttgagaagt gtggatgaag acaaaacttc
      241 tcagtgaaag taaataaaat taaccagtac ttcaagtctt tctcactgaa gtttcattaa
      301 ctggaggtgg ataccaatcc tgaggttttc caaagtagga gccatctacc tctcaatata
      361 agcacttatt actggttgcc ccatgacttt actccatgat aagatgaaaa ttcatatgct
      421 gtctgaaaca ttcacagaat catcatattg aatatagaga gttctcaaac gttatctttt
      481 caatttgttc tgttgttttc acaatgtcgg agatcagatt cagcaatctc acttgggatc
      541 acatcgtaac actggatcgt gtgttacatg aagtgatccc aattcatgga aggggcaatt
      601 ttcccacgct ggaggtaaaa ccaaaagata ttattcatat tgtgaaagat caactcataa
      661 aacagggcat tgttgttaaa gatacaagat tgaatggctc aacagcaagt tacatactcg
      721 caagccataa tggaatcagc tataaagatt tggatattat ttttggtgtt gatataccaa
      781 gtgatgaaga atttcatgta gttaaggatg cagttttaag ctgtctattt gacttcttgc
      841 caaaaggtgt taaaaaagaa aagattaccc taaaaaccat gaaagaagca tatgtgcaga
      901 aaatggtaaa aatttgcaat aaccatgatc gctggagtct catctccctt tcaaataaca
      961 acgggaagaa cgtagaacta aaatttgtga attcactcag acgacaattt gaatttagtg
     1021 tagattcttt tcaaattctt ttggattcca tgttagattt ctatagtgtc ccaaatgcca
     1081 agctaactaa agaatcctgt cctgttgtgg tggctgaaag tatgtatggg gactttcaag
     1141 aagcaatgat acatttgaaa tataagctaa tatctaccag aaaacctgaa gagatcagag
     1201 gtggtggcct tttgaagtat agcaatttgt tggttcgtga cttcaaacca gcttgtcaaa
     1261 cagaaattaa gactctggaa cgttatatgt gttctagatt tttcattgat tttcctgatg
     1321 tagcagaaca gcaaaagaaa attgaatcgt acctccacaa ccatttcatt ggtgaagcaa
     1381 agaacaagta tgactacctt atgaccttgc atggagttgt aaaccaaagc accgtctgcc
     1441 tcatgggata tgaaagaagg cagaccctta acatgatcac ccttttggct ttgaaagtac
     1501 ttggagaaca gaatatttta cccagtacag acaacgtaac ttgcttttac caacctgctc
     1561 catacctagt tcttgaggga gggtacccca gttattatgt agcatctggg ctaccactgg
     1621 tttatttcca gccatgtcat acagtgcagt tccctgtgca aaatggtatg atgtaagaaa
     1681 tacacatacc acaagttttg cttaagcaac tctgaaaaag caattttcca agttctgtaa
     1741 aaagttaaga tctatttttg tgtagttgcc aactattttt cactaattct ccattttcac
     1801 caatacttca ataaccatag tggataaagt atcatctcta aactgacatt ttaacatgat
     1861 cattgaatat tgtaactgta aaatatttca aatgtagtag aaacctttaa atgatttttc
     1921 acatcttact gacaaattta ttgtgaccag tctaagatgc ctacatattt ggctaacgta
     1981 tgaaagaaca cttctcatgt tttaagatga agtgtagtga agatatatta caacattttt
     2041 actacaatta gttctttgtt acactgtttt ttgttagcaa atgataacat gaaatttttg
     2101 ttcataaatt gaaagtattt gatttcaaag ataattttaa atgatgttaa aataatgaat
     2161 tgtaagcctg tgttccccag tacatttcat caacttgaaa acattgctaa aatttaaaag
     2221 accacttgga aaaatattct ggaaaacagg aatttatcct ttatatcgaa tgaatttagc
     2281 taatatgtgg atcgaaaagt acctttcaac tgaacaacca agaacgtgac ttaagcaagc
     2341 atctttgcca tgtaattata catcgaaaca gaaaaaaagt ccacttctga acatgaaact
     2401 attctatcat catcttttaa gataaaaata aatggaagag aaaagagaaa caccatcaac
     2461 aatgaaagaa aaatagattt cagccatgac atttaaggga tttttttcct ttttcaccta
     2521 tttgatcaat atccttaata taactggaaa tgttcaacat tagacattga aaccacttat
     2581 cactagatga aggctttttt ccaacaccaa agatttgttt ctagtatctt cttcaatgtt
     2641 aatttcagtt aatactactc tttttttcag tattgcatat attcatcatt attctcaata
     2701 tctgctcagt atataagata tccactagca aatctatgag agtggtttaa aatgaatgtt
     2761 ctttatatga tgaaaagagc tgttatatgc gatgataaca gcaagctagt ctgaatgaat
     2821 atcaataagg ccatcggaaa acttattttt ctgtcacaac aagaaccagc aatcaaaatc
     2881 ttgaaatgtg ctatctacag actgtattta cagtattgaa tagaatagta caatttttat
     2941 ggaatttttg aagtggttaa tatttctggc attttgtata catacatcac tgcacattgg
     3001 tatgtttaaa taattacatg tgtaatacaa aagcacaagg ctttaaaata tttggattta
     3061 ccctttcagg tggagatgaa ataaaaattt ttaaatacta a
//
