LOCUS       XM_006521630            2947 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus thymine DNA glycosylase, pseudogene
            (Tdg-ps), mRNA.
ACCESSION   XM_006521630
VERSION     XM_006521630.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000081.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006521630.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2947
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="15"
     gene            1..2947
                     /gene="Tdg-ps"
                     /note="thymine DNA glycosylase, pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 1 EST, 32 long SRA reads, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:545124"
                     /db_xref="MGI:MGI:3645587"
     CDS             117..1382
                     /gene="Tdg-ps"
                     /codon_start=1
                     /product="G/T mismatch-specific thymine DNA
                     glycosylase-like"
                     /protein_id="XP_006521693.1"
                     /db_xref="GeneID:545124"
                     /db_xref="MGI:MGI:3645587"
                     /translation="MDAEAALSYSLEQVQALYSFLFQQMMAEVPNMAVMTGQQVPAVA
                     PNMATVTEQQVPTDAPVQEPAPEAPKRRKRKPRAAEPQEPVEPKKPATSKKSGKSTKS
                     KEKQEKITDAFKVKRKVDRFNGVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKG
                     HHYPGPGNHFWKCLFMSGLSEVQLNHMNDHTLPGKYGIGFTNMVERTTPGSKDLSSKE
                     FREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETL
                     CYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNADVQEVQYTFDLQLAQED
                     AKKMAVKEEKYDPGYKAAYGGAYGENPCNGEPCGIASNGLTAHSAEPRGEAAPGDVPN
                     GQWMAQSFAEQIPSFNNCGTREQEEESHT"
ORIGIN      
        1 aggccagcgc cgtccatcca ccagccaccc cgatcctgtg gtgagtccgc gcgctgagcg
       61 gcagagcggg cgcccgtggg ctcggcagga gtggccgtac cctcggcggc gccgccatgg
      121 acgcagaggc tgcgctcagc tattctctgg agcaagttca agctttgtat tcatttctat
      181 ttcaacaaat gatggcagaa gttcctaaca tggcagtcat gactggacag caggtgccag
      241 cagtagctcc taacatggca accgtgacag aacagcaggt gcccacagac gctcctgtcc
      301 aggaacctgc accagaagct ccaaagagaa ggaaaaggaa acccagagca gcagagcccc
      361 aggaaccagt ggagcccaaa aaacctgcta cgtcgaagaa atccggcaag tctacaaaat
      421 caaaagaaaa gcaggagaaa atcacagacg cgtttaaagt gaaaaggaaa gtggaccgct
      481 tcaacggcgt ctctgaagct gagcttctga ccaagactct tcctgacatt ttgaccttca
      541 atctggatat tgtgatcatt ggcattaacc cgggattaat ggctgcttac aaaggacatc
      601 actaccctgg gcctggaaat cacttctgga agtgtctgtt catgtcgggg ctgagtgagg
      661 tgcagctgaa tcacatgaat gaccacacct tacccggcaa gtacggcatc ggattcacca
      721 acatggtgga acggacgacg ccgggcagca aggatctgtc tagtaaagag ttccgggaag
      781 gagggcgcat cctggtgcag aaactgcaga aatatcagcc acgaatagcg gtgtttaatg
      841 gaaaatgtat ttatgaaatt ttcagtaaag aagtttttgg agtaaaggtt aagaacttgg
      901 aatttgggct tcaaccccac aagatcccag acacagaaac tctgtgctac gtcatgccgt
      961 cgtccagcgc cagatgtgct cagtttcccc gggcccagga caaagttcat tactacatta
     1021 agctgaagga cttgagagac cagctgaaag gcattgaacg caacgcggac gttcaggaag
     1081 tgcagtatac atttgacctg cagcttgcgc aagaggatgc aaagaagatg gcagttaagg
     1141 aagaaaagta tgatccaggc tataaggcag cttacggcgg cgcctatggg gaaaacccat
     1201 gtaatgggga accttgtggc attgcttcaa atgggctaac agcccacagt gcggagccga
     1261 gaggagaagc agcccccggc gatgttccga atgggcagtg gatggcacag tcgtttgcag
     1321 agcagatccc ttcttttaat aattgtggga cccgagagca ggaagaagag agccacactt
     1381 aggaagggtg cctctcagct cgggctcagg gctgcagttc taatgcagac ctcaggacag
     1441 agagcctcag tgtgctaact gaggggcttt agtgttaatg gtcctttacg ctagtggtgt
     1501 aattatatat gaagcagtta tatggtagag tcaactgtat gaatctgtgt agtttggaaa
     1561 ggaaaaatag ggtgttttgt acttgagttt tgtattttaa ctacccatcg ttccagcttt
     1621 ttatatacta tatttcattt atgaagaaac tggttttctc tgaggagtca cttcaatctg
     1681 taattttaaa aaagcaacag tcggaatatt tatagttgat tcttcactgt gcatacctat
     1741 atatgccctt atccctttaa atgcctaagt agggcatgct actaagaatc aagctggtga
     1801 aaggcagatg tgcctgtctc tgttggacac cgactaaccc tccgccctcc gtggactcga
     1861 agctggaggt ggactcagaa ccctctgggt tgcagtcaca cgcagacccc cttactctcc
     1921 cagtagtgtg tgtggcagtt gtttggtagt agaaacctga tggggcctga gccctgccgt
     1981 tggcctctgc ctcttgtggt tcctgagaag gcagtagaac ctggacagtt gccacccctc
     2041 tgttttactg aatcccccgt cagtgttcat cactgttgtg attttatccc gacctggaaa
     2101 gcgctaaaaa atgaactttc cagttagcca tgcgctgctg caggtgtttg ataaccctgt
     2161 ttaaactggt gctgtgtaca tgggatgtac tgatacagaa cttctcttct agggaaagct
     2221 aatcatttgt caatgattta aaaattattg tcactactgt tgattactgt ggactaagtg
     2281 agcctcgtga aagagctgat tggaatttgt acctttgtgg ctgctcatgc attttccatg
     2341 gtgctacaga cagcctgccc gggctggtgg ctaggaaacg tgcgtgttca gcgatgccta
     2401 gcgctctcac tcctgagcac tctgacttgg tgcccacccc tggcgcgtgc tggtttggga
     2461 gtatgaaatg cccacgaggg ttttgtatct cacaaaggtt atgtagcctg ttctgtgaat
     2521 aatgagggaa gcagtttctt ggtggaaatt ttaacatgcc tttagctgtg gcagtgatgg
     2581 gctttctttt tccttctgtc tgggtcaggt tgtgcacaag tcatgttatt tggaaggtgc
     2641 actgcactgc tgtttacatg ggcattttat gcgggtgctt tgaagtgcct tgcatcaggg
     2701 attaggatca actgaattct ttttttcatg ggactatgta aagcatgtag tattgccttg
     2761 gtatttaact attgtagttt taccatggag aaataccttt aaattataac tctggagagc
     2821 agccatgagg accctctgta cttcctggtg cttttcctta acatggtggg tgagtagcga
     2881 gtgcggggca ccctgtacat ggcagggtgg ggcgttctca ttaaataata ctgagatttt
     2941 aaacatg
//
