LOCUS       NM_001310627             881 bp    mRNA    linear   ROD 31-OCT-2023
DEFINITION  Mus musculus 2 cell stage variable group member 2A (Tcstv2a),
            transcript variant 2, mRNA.
ACCESSION   NM_001310627
VERSION     NM_001310627.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 881)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC239678.2.
            
            Transcript Variant: This variant (2) uses an alternate splice site
            in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode
            the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF067061.1, AA545266.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849388 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-137               AC239678.2         87165-87301
            138-881             AC239678.2         87844-88587
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13"
     gene            1..881
                     /gene="Tcstv2a"
                     /note="2 cell stage variable group member 2A"
                     /db_xref="GeneID:236546"
                     /db_xref="MGI:MGI:2681166"
     exon            1..137
                     /gene="Tcstv2a"
                     /inference="alignment:Splign:2.1.0"
     exon            138..881
                     /gene="Tcstv2a"
                     /inference="alignment:Splign:2.1.0"
     CDS             166..681
                     /gene="Tcstv2a"
                     /note="2-cell-stage gene family; clone L4 variable group
                     of 2-cell-stage gene family; clone L8 variable group of
                     2-cell-stage gene family"
                     /codon_start=1
                     /product="uncharacterized protein LOC236546"
                     /protein_id="NP_001297556.1"
                     /db_xref="CCDS:CCDS84071.1"
                     /db_xref="GeneID:236546"
                     /db_xref="MGI:MGI:2681166"
                     /translation="MDKAKKMMQSIPSFVKDTSDIEEHAVPSAQVLPAQSTRCSKSET
                     LCFSKEQSHCSEDGWIANWDLYSFCVFESVDYLRSYRRLNSAMKKGTEVFQSESQRKP
                     QVSPGDVESYKDKDTEEPDQPSPSLLREKGLDLATCDGGDCPDQDPVSDSSRHLGCWA
                     WLQRAFGQKKK"
ORIGIN      
        1 gcaagtctat tactttgttg gcactagagt ctccttgtgt gattccatct tctacagaag
       61 accagctgag acatccagcc tcaggaactg agaacttctg gattcttgga ctttgcttcc
      121 tatacagctc ttgaggaaag gtggaggact taccctcagg gatccatgga taaagccaag
      181 aaaatgatgc agtccattcc tagttttgtc aaggatacat cagatattga agaacatgca
      241 gtgcccagtg cacaggtctt gccagcccag agtacaaggt gttccaagtc tgagacactt
      301 tgtttcagca aagagcaaag ccattgctct gaggatggct ggattgccaa ttgggatcta
      361 tactcctttt gtgtatttga gagtgtggac tacctgagat cctaccgcag attgaattct
      421 gccatgaaga agggcacaga ggtcttccag agtgagagtc agaggaagcc acaagtgtcc
      481 ccaggagatg tggaaagcta caaagacaaa gatacagagg agccagacca accctcccca
      541 agcttgctca gggagaaagg actggatctt gcaacctgtg atggtggaga ctgccctgac
      601 caggatcctg tttctgacag ttccaggcac ctaggctgct gggcatggct tcaaagggct
      661 tttggccaga agaagaagtg agaaaggcac taagaactgt gtttggagcc catgaaccct
      721 gatgcctgct aagacttgca attagggaat cttctgtcag ctcctgctgt tacaggaaag
      781 gcacacaaag gcagttgtgt ctttgcagcc atctgggttt tgattgtgtt tgtttatttt
      841 ttgtttgttt acagctctct taataaaagt gttaaaaagc t
//
