LOCUS       NM_027952               1776 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus t-complex 11 family, X-linked 2 (Tcp11x2), mRNA.
ACCESSION   NM_027952 XM_136071
VERSION     NM_027952.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1776)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1776)
  AUTHORS   Zhou,J., McCarrey,J.R. and Wang,P.J.
  TITLE     A 1.1-Mb segmental deletion on the X chromosome causes meiotic
            failure in male mice
  JOURNAL   Biol Reprod 88 (6), 159 (2013)
   PUBMED   23677977
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU961951.1, BC141320.1, AK005772.1 and BY457483.1.
            
            On Dec 2, 2009 this sequence version replaced NM_027952.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK005772.1, BC141320.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-19                BU961951.1         4-22
            20-1674             BC141320.1         1-1655
            1675-1769           AK005772.1         1676-1770
            1770-1776           BY457483.1         394-400
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 57.26 cM"
     gene            1..1776
                     /gene="Tcp11x2"
                     /gene_synonym="1700008I05Rik; TCP11; Tcp11l3"
                     /note="t-complex 11 family, X-linked 2"
                     /db_xref="GeneID:71841"
                     /db_xref="MGI:MGI:1919091"
     exon            1..58
                     /gene="Tcp11x2"
                     /gene_synonym="1700008I05Rik; TCP11; Tcp11l3"
                     /inference="alignment:Splign:2.1.0"
     exon            59..193
                     /gene="Tcp11x2"
                     /gene_synonym="1700008I05Rik; TCP11; Tcp11l3"
                     /inference="alignment:Splign:2.1.0"
     CDS             70..1581
                     /gene="Tcp11x2"
                     /gene_synonym="1700008I05Rik; TCP11; Tcp11l3"
                     /codon_start=1
                     /product="T-complex protein 11 homolog"
                     /protein_id="NP_082228.2"
                     /db_xref="CCDS:CCDS41129.1"
                     /db_xref="GeneID:71841"
                     /db_xref="MGI:MGI:1919091"
                     /translation="MPKSEKIISKKDSSPSENGSPKPETSSKNQEDKTSSEVHSAENQ
                     LAAISNEDTGKVNEVSKLNVASEIAIEKNDLPEDSPESQFVETMYNAFWDHLRDQLSQ
                     TPPDFSCVLELIKNIKQILMALLLPRQNLLRNEIEEVLDLDLLKQETEHGALDILHLS
                     HYILNLMALMCAPIRDEAVKELENIKDPVQLLRGIFQVLGLMKMDMVNYTIKNIRPYL
                     QEHSIQYERAKFQELLDKQPDRLDCTTKWMTRAATEIITSLSSLSVTSCISSGVISSF
                     PTPKPDPDPPSLTTVLYQGYLNLVLRDHGNEEFPETLLMDKARLQTMRSKFRHLTILA
                     SVLLVARSFSCGVLFSSPEFVDKLKCITKALTEDFSSKPEESMLSVSEQVSQEIHQGL
                     KDTGLTALSSENRASLVGQLRNIAKKENCIRIIIEQRMHLFLKCCLIRGMQESLLDFP
                     GCFLFIEPELAELGWKFVNLMHHNQHVFSPYYAEILKNIISTQNDEDEEKPIK"
     exon            194..305
                     /gene="Tcp11x2"
                     /gene_synonym="1700008I05Rik; TCP11; Tcp11l3"
                     /inference="alignment:Splign:2.1.0"
     exon            306..426
                     /gene="Tcp11x2"
                     /gene_synonym="1700008I05Rik; TCP11; Tcp11l3"
                     /inference="alignment:Splign:2.1.0"
     exon            427..647
                     /gene="Tcp11x2"
                     /gene_synonym="1700008I05Rik; TCP11; Tcp11l3"
                     /inference="alignment:Splign:2.1.0"
     exon            648..784
                     /gene="Tcp11x2"
                     /gene_synonym="1700008I05Rik; TCP11; Tcp11l3"
                     /inference="alignment:Splign:2.1.0"
     exon            785..1002
                     /gene="Tcp11x2"
                     /gene_synonym="1700008I05Rik; TCP11; Tcp11l3"
                     /inference="alignment:Splign:2.1.0"
     exon            1003..1184
                     /gene="Tcp11x2"
                     /gene_synonym="1700008I05Rik; TCP11; Tcp11l3"
                     /inference="alignment:Splign:2.1.0"
     exon            1185..1348
                     /gene="Tcp11x2"
                     /gene_synonym="1700008I05Rik; TCP11; Tcp11l3"
                     /inference="alignment:Splign:2.1.0"
     exon            1349..1776
                     /gene="Tcp11x2"
                     /gene_synonym="1700008I05Rik; TCP11; Tcp11l3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1752..1757
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tcp11x2"
                     /gene_synonym="1700008I05Rik; TCP11; Tcp11l3"
                     /note="hexamer: AATAAA"
     polyA_site      1776
                     /gene="Tcp11x2"
                     /gene_synonym="1700008I05Rik; TCP11; Tcp11l3"
                     /note="major polyA site"
ORIGIN      
        1 agttgtaaga gcagccatca acggggaaag gcagtcaaac acccaggacc agaaagagat
       61 accaccaaca tgcccaagag tgagaaaatt atatccaaaa aggactccag tccatctgaa
      121 aatggatccc caaaaccaga aacatcaagc aagaaccagg aagataagac cagttcagag
      181 gtccactctg cagagaacca gcttgcagca atttctaatg aagatacagg aaaagttaat
      241 gaagtttcca aattgaatgt tgcttctgaa attgccatag aaaagaatga tttacctgaa
      301 gacagtccag aaagccaatt cgtggagaca atgtacaatg cattttggga ccacttgaga
      361 gatcaactgt cacaaacccc tcctgacttt tcttgtgttc ttgaacttat aaaaaacata
      421 aaacagattt taatggcact actattacca cgtcagaatc ttctaagaaa tgagattgaa
      481 gaggtactgg atttggatct cctcaaacaa gaaacagagc acggggctct ggatattctg
      541 catctctccc actatattct caacttgatg gccctcatgt gcgcaccaat tagagatgaa
      601 gctgtaaagg aattagaaaa cataaaagat ccagtacagt tactgagggg tatcttccaa
      661 gttttaggcc tgatgaaaat ggatatggtg aactatacta ttaagaacat tcgaccatat
      721 ttacaggaac attctataca atatgaacga gctaaatttc aagaactcct tgacaaacag
      781 cctgatcgac ttgattgcac cacaaaatgg atgactagag ctgccacaga gattattaca
      841 tcactttcaa gtttatctgt cacttcatgt atctcttctg gcgtaataag ttcatttcct
      901 actccaaagc ctgacccaga tccacccagt cttacaacag tgctatacca agggtaccta
      961 aatcttgttc tcagggacca tgggaatgaa gaattccctg agactctgct gatggataaa
     1021 gcacgactgc agactatgag atccaaattt cgccacttga ctattctagc ctcagtttta
     1081 ctggtggcaa gaagtttctc ttgtggtgtt ttattcagct caccagaatt tgtggataaa
     1141 ttgaagtgca taacaaaggc tctaactgaa gattttagct ccaagccaga agaatctatg
     1201 ttaagtgtga gtgaacaagt gtctcaggaa atccatcaag gtctcaaaga cacaggccta
     1261 actgctctga gcagtgaaaa cagggcatca cttgtaggac aactgcggaa cattgccaag
     1321 aaagagaatt gcattcgtat catcattgaa caacggatgc atttatttct taaatgctgt
     1381 ttgattcgtg gcatgcaaga atctcttcta gacttccctg gatgctttct tttcattgag
     1441 ccagagttag cagaactagg atggaagttt gttaatctga tgcaccacaa ccagcatgtg
     1501 tttagcccgt actatgctga aatcctaaaa aacatcatct caacacaaaa tgatgaagac
     1561 gaagaaaagc caatcaaata atgctggtcc caagtcctgg caccaggaat ccaaagagag
     1621 gtctcattat gttcctagga taacatcacc catggccaac aactgcaggt gaccctcttc
     1681 ctcattaaga ttcaggatgc aactgttagc ggccaaccgt acaaattcca aatggcccaa
     1741 tccccttcat taataaactc ttgagctgca agaaaa
//
