LOCUS       NM_146008               2400 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus t-complex 11 (mouse) like 2 (Tcp11l2), mRNA.
ACCESSION   NM_146008
VERSION     NM_146008.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2400)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2400)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC140333.2.
            
            On Nov 17, 2006 this sequence version replaced NM_146008.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC029663.1, AK146035.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-66                AC140333.2         58174-58239         c
            67-374              AC140333.2         50131-50438         c
            375-510             AC140333.2         47947-48082         c
            511-631             AC140333.2         45182-45302         c
            632-852             AC140333.2         43878-44098         c
            853-989             AC140333.2         40402-40538         c
            990-1171            AC140333.2         30498-30679         c
            1172-1353           AC140333.2         30119-30300         c
            1354-1526           AC140333.2         26549-26721         c
            1527-2400           AC140333.2         20831-21704         c
FEATURES             Location/Qualifiers
     source          1..2400
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 41.55 cM"
     gene            1..2400
                     /gene="Tcp11l2"
                     /gene_synonym="E430026E19Rik"
                     /note="t-complex 11 (mouse) like 2"
                     /db_xref="GeneID:216198"
                     /db_xref="MGI:MGI:2444679"
     exon            1..66
                     /gene="Tcp11l2"
                     /gene_synonym="E430026E19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            67..374
                     /gene="Tcp11l2"
                     /gene_synonym="E430026E19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             218..1771
                     /gene="Tcp11l2"
                     /gene_synonym="E430026E19Rik"
                     /codon_start=1
                     /product="T-complex protein 11-like protein 2"
                     /protein_id="NP_666120.1"
                     /db_xref="CCDS:CCDS36016.1"
                     /db_xref="GeneID:216198"
                     /db_xref="MGI:MGI:2444679"
                     /translation="MPFNGEKQCVSEDQQSDSESSRFAEGVASLSDYECSRQSFTSDS
                     SSKSSSPASTSPPRGLMFDDVMAAAKNLSDMTLAHEIAVNENFQLKQNALPENSLAGQ
                     VKRVVHQAFWDVLEADLSAEPPQYEYAIKLFEEIREILLSFLTPGGNRLHSQICEVLD
                     IDLIRQQAEHSAVDIQGLANYVITTMGKICAPVRDEDIRELKATTNIVEMLRQIFRVL
                     DLMRMDMMNFVIRNIRPHIQHHLVEYERNKFQEVVEETPNALSQTTEWLKESIDKELL
                     SETDVAPAAEHSSTPSLSPLLVLNNCYLKLLQWDYQKKVLPETLMTDGPRLQELSEKL
                     NQLKMTACVALITNNMVGAVTEGLPELANRLKRISAVLLEGMNKETFNLKEALHSIGV
                     QTCAEVNKALEERGSPTLNAEVQANLVGQLSSLEEKDNPVCTLMDKRIQLYMKGLLCL
                     PSTQKSMPPVPGGLDVIQRELEVLGCQYANIVNLNKQVYGPFYANIFRKLLFRDEAVG
                     KIDASLPTN"
     exon            375..510
                     /gene="Tcp11l2"
                     /gene_synonym="E430026E19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            511..631
                     /gene="Tcp11l2"
                     /gene_synonym="E430026E19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            632..852
                     /gene="Tcp11l2"
                     /gene_synonym="E430026E19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            853..989
                     /gene="Tcp11l2"
                     /gene_synonym="E430026E19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            990..1171
                     /gene="Tcp11l2"
                     /gene_synonym="E430026E19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1172..1353
                     /gene="Tcp11l2"
                     /gene_synonym="E430026E19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1354..1526
                     /gene="Tcp11l2"
                     /gene_synonym="E430026E19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1527..2400
                     /gene="Tcp11l2"
                     /gene_synonym="E430026E19Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2378..2383
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tcp11l2"
                     /gene_synonym="E430026E19Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2400
                     /gene="Tcp11l2"
                     /gene_synonym="E430026E19Rik"
                     /note="major polyA site"
ORIGIN      
        1 gggatacgca gagccccgcg acccccgcca cctagctttc ctcgagtctc tacgcgggat
       61 ccgggggttc tctctctgtg tgtgtgtgtc tatctctctg tctccgtctc tctgtctctc
      121 tgtctctctg tctctctttc tctctctctc tctctctctc tctctctctc tctgtctctc
      181 tccccccacc cccattccat ccccaaggtg ataaaggatg cctttcaacg gtgagaagca
      241 atgtgtgagc gaggaccagc agagtgactc agagtcttct cggttcgccg aaggcgtggc
      301 ttcactcagt gactatgagt gttccaggca gagcttcacc agcgattcct ccagcaaatc
      361 cagctctcct gcctcaacaa gccctccccg gggcttaatg tttgatgatg tgatggctgc
      421 agcaaagaac ttatcagaca tgactctcgc tcatgaaata gctgtgaatg agaacttcca
      481 gctgaagcaa aatgctctcc ccgagaacag ccttgctggt caagtgaagc gtgttgtcca
      541 ccaggccttc tgggatgtct tggaagcaga tctcagtgct gagcctcctc agtatgaata
      601 tgccatcaaa ctgtttgaag aaatcagaga gattcttctc tctttcctca cgcctggcgg
      661 gaacagactt cacagccaga tctgtgaggt tctggacatc gacctcatta gacagcaggc
      721 cgagcacagt gctgtcgaca tccaaggtct ggccaactat gtcatcacca ccatggggaa
      781 gatatgtgct cctgtgagag atgaagacat ccgagagctg aaagctacca ccaacatcgt
      841 ggagatgctg agacaaatct tccgtgtctt ggacctcatg agaatggaca tgatgaattt
      901 tgtcattagg aatattagac ctcacatcca gcatcatttg gtggaatatg agagaaacaa
      961 attccaggaa gttgtagaag aaactccaaa tgccctcagt caaaccacag agtggctgaa
     1021 agagtccata gataaagaat tgctttctga gactgatgta gctcctgcag ctgaacatag
     1081 ctccacgcct agcctgagcc ctctgttggt gcttaataac tgttacttga aactccttca
     1141 gtgggattat cagaaaaaag tcttaccaga gacactcatg acagatggac cacggcttca
     1201 agaactgtca gaaaagctca atcaattgaa aatgactgcc tgcgtggcct taatcaccaa
     1261 caacatggtg ggtgctgtta cagaaggcct gcctgaactt gctaacaggt taaaaaggat
     1321 ttcagctgtt ctgcttgaag gcatgaataa agagaccttt aacttgaagg aagccctgca
     1381 ttctattggt gttcagactt gtgctgaagt taacaaggcc ctggaagaga gaggctcgcc
     1441 cactttaaat gctgaggttc aagctaacct tgtcggtcag ctctccagcc ttgaagagaa
     1501 ggacaatcct gtctgcacct tgatggataa acggatccag ttgtacatga aaggcctgct
     1561 ctgtcttcca agcactcaga agagcatgcc tcctgtgcca ggtggccttg atgtcatcca
     1621 gcgggagctg gaagtgcttg gctgccagta tgcaaacatt gtgaatctca acaaacaggt
     1681 gtatggacca ttttatgcaa atatattccg aaagctgctc ttccgggatg aagccgtggg
     1741 gaagatagat gcttcacttc ccactaacta aagagacgag atggagatca gcacttggta
     1801 catggtccgt ttccaccagt ggcattggag atgtggccca ttctccgccc tgtccctaga
     1861 ctgcatccgt gtaacctggt aatggatgct agcaccacag agggcctcac acccctcttg
     1921 tgtttaaagc agatagtttt aatgaagaaa agtaatttgt aatgaattat attacctata
     1981 taacattggt gttttcttaa acatttatat tgagattttg ttgttgttgt tttggacagt
     2041 gtgtctgtgt aacagccctg gctgtcctgg agtatattgc acatttctat gtgacttgtt
     2101 cattcaacct gaaaggaaat gatttttgtt tatatacttg attatactgc agctgcctgc
     2161 aggaatacaa tgtgcaaaca tttaaaaata cattgaaaat gaagggcatt ctgcttcatt
     2221 ttttgttaag tggcaaagta aatttgtgtc ttggatatgg atttagccaa gtacatttat
     2281 tagggttttt tagaatcata gctcttggca tgtttattta gtttttactt aaatgtttac
     2341 ttcaactttt gtggctttcc taacatggtt gttttataat aaaaacttta ttaaacagaa
//
