LOCUS       NM_177190               3512 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus t-complex 11 like 1 (Tcp11l1), mRNA.
ACCESSION   NM_177190
VERSION     NM_177190.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3512)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3512)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BX908741.7 and
            AL844603.5.
            
            On Oct 19, 2007 this sequence version replaced NM_177190.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK082024.1, BC116932.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-187               BX908741.7         3483-3669           c
            188-369             AL844603.5         140254-140435       c
            370-502             AL844603.5         133740-133872       c
            503-623             AL844603.5         132433-132553       c
            624-844             AL844603.5         131408-131628       c
            845-981             AL844603.5         124392-124528       c
            982-1178            AL844603.5         122276-122472       c
            1179-1360           AL844603.5         119261-119442       c
            1361-1533           AL844603.5         117992-118164       c
            1534-3512           AL844603.5         113878-115856       c
FEATURES             Location/Qualifiers
     source          1..3512
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 54.87 cM"
     gene            1..3512
                     /gene="Tcp11l1"
                     /gene_synonym="C130096D04Rik"
                     /note="t-complex 11 like 1"
                     /db_xref="GeneID:320554"
                     /db_xref="MGI:MGI:2444263"
     exon            1..187
                     /gene="Tcp11l1"
                     /gene_synonym="C130096D04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            188..369
                     /gene="Tcp11l1"
                     /gene_synonym="C130096D04Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             207..1736
                     /gene="Tcp11l1"
                     /gene_synonym="C130096D04Rik"
                     /codon_start=1
                     /product="T-complex protein 11-like protein 1"
                     /protein_id="NP_796164.1"
                     /db_xref="CCDS:CCDS16491.1"
                     /db_xref="GeneID:320554"
                     /db_xref="MGI:MGI:2444263"
                     /translation="MSENLDKSHVDEAGEAEAAASEQGLEGALECSDETLQKKVKSDS
                     PSSQRVGRPHSSPARLVTVEELLETAKGVTNMALAHEIVVTGDFRINAVELAEGSLEK
                     RVKEIVHKAFWDCLSVQLSEEPPTYDHAIKLVGEIKETLLSFLLPGHTRLRNQITEVL
                     DLELIKQEAENGALDISKLAEFIIGMMGILCAPARDEEVKKLKGIKEIVPLFRAIFSV
                     LDLMKVDMANFAISSIRPHLMQQSVEYERRKFQEVLERQPNSLDFATQWLEEATNDLL
                     SQKYKHALPAGGGAAGSGDAPLLTPVSVQNFAYLKLLKWDHFQRPFPETVLMDQSRFQ
                     ELQLQLEQLAVLGAVLLVTFSTAAPGISGHADFAEKLKMMVKTLLTDMHLPSFHLEDA
                     LASIGEKVCLEVSSCLSLCGSSPFSVAKETVLKGQIQALASPEDPIRRIMESRIFTFL
                     ETYLASGHQKPLPTVPGGLGPIQKELEEVAVKFVRLVNYNKMVFCPYYDAILSKLLLR
                     S"
     exon            370..502
                     /gene="Tcp11l1"
                     /gene_synonym="C130096D04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            503..623
                     /gene="Tcp11l1"
                     /gene_synonym="C130096D04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            624..844
                     /gene="Tcp11l1"
                     /gene_synonym="C130096D04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            845..981
                     /gene="Tcp11l1"
                     /gene_synonym="C130096D04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            982..1178
                     /gene="Tcp11l1"
                     /gene_synonym="C130096D04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1179..1360
                     /gene="Tcp11l1"
                     /gene_synonym="C130096D04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1361..1533
                     /gene="Tcp11l1"
                     /gene_synonym="C130096D04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1534..3512
                     /gene="Tcp11l1"
                     /gene_synonym="C130096D04Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2279..2284
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tcp11l1"
                     /gene_synonym="C130096D04Rik"
                     /note="hexamer: AATAAT"
     polyA_site      2306
                     /gene="Tcp11l1"
                     /gene_synonym="C130096D04Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcggccggcg ctgcccaccg acgcggggca cagaggacgg cccgcagctc ggggagagcc
       61 aggcgccccg gcgggggtcg aggcccaggc gcccaggccg gcgcgcatcg ctccccccct
      121 ttcgcgtcgc ggaccccgcg gtactcgcag ccggagtgac cctgggtggt cgccgacgcc
      181 gcggcaggaa acagacttaa ctgaggatgt ctgaaaacct tgacaagtcc catgtagacg
      241 aagcaggaga ggcagaggcg gctgcctccg agcaaggcct ggaaggtgct ctggagtgct
      301 ctgatgaaac cttacagaaa aaagtgaagt cggactcacc tagttcccaa agagtgggaa
      361 gacctcactc cagtcccgct cggcttgtca ctgtagagga acttctagaa acagcaaaag
      421 gagtcaccaa catggctctg gcccatgaaa ttgtagtaac tggagacttc cggattaacg
      481 ctgttgaatt agccgaaggc agcttggaga agagagtaaa agagattgta cataaagcat
      541 tctgggattg cttgagtgtc cagttaagtg aagagccccc aacatatgac catgccatca
      601 aacttgtagg agagatcaaa gagactctgt tatctttctt gctgcctggt cacactagac
      661 taagaaacca gataacggaa gtcttggatc tggagctgat aaaacaagaa gcagagaatg
      721 gggccctaga catttccaag ctggcagagt tcattattgg catgatgggg atattgtgtg
      781 cacctgctcg agatgaggaa gttaaaaaac taaagggcat taaggaaata gtgcctctct
      841 tcagggcaat attttctgtg ttggacctaa tgaaagttga catggccaac ttcgccatca
      901 gtagcattag gccgcacctc atgcagcagt cagtcgagta tgagaggagg aagtttcagg
      961 aagtgctgga gaggcagccg aactccctgg actttgccac acagtggctg gaagaggcca
     1021 caaatgacct tttgagtcag aagtacaaac atgccctgcc agctggggga ggcgctgctg
     1081 gctctgggga tgccccactc ctgacccctg tttctgtcca gaatttcgcc tacctgaagc
     1141 ttctgaaatg ggaccacttc cagagacctt tccctgagac agttttgatg gaccagtctc
     1201 gtttccaaga gctccagctc cagctggagc agctggccgt cctgggagcc gtgctgctgg
     1261 tcacgttcag taccgctgca ccgggaattt ctgggcatgc cgactttgcc gagaagctca
     1321 agatgatggt gaagactctg ctaacggaca tgcatctgcc ttccttccat ctggaggacg
     1381 ccctggcttc cattggcgag aaggtgtgcc tggaggtgag cagctgcctc tccctgtgtg
     1441 gctcctcccc attctccgtt gctaaggaga ccgtgctcaa gggccagatt caggccctcg
     1501 ccagtcccga ggaccccatt cgcaggatca tggagtcccg cattttcacc ttcttggaga
     1561 cataccttgc ctctggtcat cagaagcccc tgcctactgt gcctggggga ttgggtccca
     1621 ttcagaaaga gctggaagaa gttgctgtga aatttgtgcg cctggtcaac tataacaaga
     1681 tggtgttctg tccctactac gatgcaatcc ttagtaagct cctcctccgc tcctgaggcg
     1741 cgcagctgcc acagcagctc tcatctcctg agaccccgct cgctcgccct cgcagtgctg
     1801 tgccgggctt cggagaatgg cggcctacgg tacattcctg attaatagcg ctgattccac
     1861 gggactgaag gatgcactgg attctgtttt gaggaccgta tgtatgagtg caagtttaca
     1921 aacctaagga gctttggttc tcttgagtag gagctcagag ccttcaacag ttggctgcct
     1981 ctgtctcagc ctctgcctcc tcagattgga ggagccgctt ctcccaagaa acccgagaca
     2041 gttgtctctc aaaagtcatt ctttctcaga tgctctgtgc ccgcatcata agccaagatt
     2101 tgtcctcttg tcccgtttac agcctccctc gcactactct tcctgtgggt gctttatggc
     2161 agggctgtct atagccttac agggtcctaa ccggctcctg cccactctac ccattgattg
     2221 cttcctgggt ctggcctaac agtgttccag agccctttag tctacagcag agttacttaa
     2281 taatttatct tctattatta ctgaaacagc atctctatat atactcccct ggctggtatg
     2341 gaacttgctt atgtaaaaca ggctgtccca gacttccaat cctcctgcct ctgccttaca
     2401 aacgctaggg ttacaggcct ctgccaccat acccaatgga tagaacttga tttttaaaag
     2461 cttgttttgt caacttgtat gtagtacagt ggccagtgat cgcctagcct gcacgaggcc
     2521 ccggggttga tctcccgcat ctaaacaaca aaggatgtac acacacacac acacacacac
     2581 acacacctgt attaagaagc cataagcccc tggagcttcc gttttaaaag gtagaagaat
     2641 tgtttgtgcc caggagctca ggagcagctt aggaaccaga gattccaact taaactcagg
     2701 tgtggtggtg cacaccttta gtcccagtac ttggaaggca gagggaggtg aatctctgag
     2761 ttctagacca gtttggtcaa tagaaggagg agttccaggc cagctaggga tacacagaga
     2821 aaccccgtct cacaaaacga aatagaaacg ctgttctttc tacagcagta ttcctgagcc
     2881 ttgactgtgg cagttaaagc tgatgaagcc aggcacgggg acatgccata gctggtcttt
     2941 gctactttgt gggttcttct atttcccacc ctttatcctc ccctccgctt ctccccctaa
     3001 cactagagag gagaaaaata aggattgggc gggcccctaa atttaatctt tcttttgttt
     3061 tcttttgact gtggctacta acagaccaca accgttctcc atcttccttt aatgaccagc
     3121 agccacccac cctgcctctt ggtgccccag tgtttatata ccttctgaaa agttcccaga
     3181 attccaaaca ccacggttat agacttaact ttcgtgagat aactttccaa ttcttagaaa
     3241 ctgggtttaa accttttgaa gtggccattc tgagtgccag gatttttatg aaatgatagt
     3301 tttattagct cctgtgtcca ccaaaccttc tatttcaata tcatttaatt gccattttaa
     3361 ttttggcttc tgatcattaa cagctgtttg ccagaacata tattttccag gacttccaaa
     3421 ccctcctgtt cattgtactg gaatagtctt tgatgtaggg aaactaacag cagagcgtcc
     3481 tgtcacctgt gttaaattgt atctcttttc ac
//
