LOCUS       XM_036161057            7699 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus transcription factor 4 (Tcf4), transcript
            variant X36, mRNA.
ACCESSION   XM_036161057
VERSION     XM_036161057.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000084.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7699
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="18"
     gene            1..7699
                     /gene="Tcf4"
                     /gene_synonym="5730422P05Rik; ASP-I2; bHLHb19; E2-2; E2.2;
                     ITF-2; ITF-2b; ITF2; ME2; MITF-2A; MITF-2B; SEF-2; SEF2;
                     SEF2-1; Tcf-4; TFE"
                     /note="transcription factor 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 14
                     mRNAs, 19 ESTs, 13187 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 24 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:21413"
                     /db_xref="MGI:MGI:98506"
     CDS             1223..2845
                     /gene="Tcf4"
                     /gene_synonym="5730422P05Rik; ASP-I2; bHLHb19; E2-2; E2.2;
                     ITF-2; ITF-2b; ITF2; ME2; MITF-2A; MITF-2B; SEF-2; SEF2;
                     SEF2-1; Tcf-4; TFE"
                     /codon_start=1
                     /product="transcription factor 4 isoform X18"
                     /protein_id="XP_036016950.1"
                     /db_xref="GeneID:21413"
                     /db_xref="MGI:MGI:98506"
                     /translation="MDMGNPGTLSPTKPGSQYYQYSSNNARRRPLHSSAMEVQTKKVR
                     KVPPGLPSSVYAPSASTADYNRDSPGYPSSKPAASTFPSSFFMQDGHHSSDPWSSSSG
                     MNQPGYGGMLGNSSHIPQSSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNH
                     YSTSSCTPPANGTDSIMANRGTGAAGSSQTGDALGKALASIYSPDHTNNSFSSNPSTP
                     VGSPPSLSGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLERLDDAIHVLRNHAVGP
                     STAVPGGHGDMHGIMGPSHNGAMGSLGSGYGTSLLSANRHSLMVGAHREDGVALRGSH
                     SLLPNQVPVPQLPVQSATSPDLNPPQDPYRGMPPGLQGQSVSSGSSEIKSDDEGDENL
                     QDTKSSEDKKLDDDKKDIKSITRSRSSNNDDEDLTPEQKAEREKERRMANNARERLRV
                     RDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRERNLNPKAACLKR
                     REEEKVSSEPPPLSLAGPHPGMGDAANHMGQM"
ORIGIN      
        1 aaaccagcca tatcagcgaa cgagggtcta tcaaaagagt tttctgcagt tgaagaactt
       61 aacaatttct caccaaagaa atgctcaggg ggcagcctca tgtcagatgc tgggttctgg
      121 gtggcattgc tctaaattat agttttcttc ggggttagaa ggtgctgtgc gaaaagaggg
      181 tgggaccgag ggataaaaat gtctgcggaa atatgatttg ttatcccttt ttgtttctgg
      241 attgtttttg gctggaagtc aaggccggca ggctaacagt aaagccatcg tcgcagggga
      301 agcatgcatg agttagagga agaggagaga gcaccttaat taaataataa agtgcaagtg
      361 tgtgcgtgtg cgtgtgcgtg tgtgtgtgtg tgtgtgtgta catgcgtgca tgtgttgcat
      421 gtcagtgccc tctgtgtttg tgtactagta actctagaga acccatttcg gaaaatgctg
      481 tctgtagaga aaagagaaag ccctaaattt ttataaatat ttttctttga attttactct
      541 cattaccaat cataattaaa agacgtatca taaggtgtac cttaaaagag caggaccagt
      601 ttagtgcttt ccagagccct ctctgagatt taaaaaaaaa atgctcttta atattcaaag
      661 ccttgtacca ttttagtcct cacccagaga tggcagacat tcgtaggttt tgtttttttt
      721 taattatttt tatttttgca gaaaaagggc tgcttcatct tctgagcctt cttgcttttc
      781 tagttttttt gaatgacgtg ggggaaaaaa atccacttgg gattgaaaaa aaaaaaagca
      841 acctgtttat tatatcctta aaacccatgt aagcccacat gtgcttcagt aactgggcac
      901 tgagggaagt ctctgtacca ggagcgctca tttctcatga aggtagaatt ctggaggatt
      961 ggttctggac gggttttctt tcccctcccc gctgctgtat atatttgcat tttaaaagtt
     1021 aactcctctg gcccagttgc caattcagtc atactccagc atctaaaaga tttgttgcga
     1081 tgagcagcgc agctctgggt tgagaactct cgcaggaggg gcagcccatg gcagtctgtg
     1141 tggaaagaat tctgcaggaa agaaacttac agccattcca gtgcaacgga aacatctttg
     1201 gaatagtctc ctcggagggg acatggatat gggcaatcca ggaacccttt cgcccaccaa
     1261 acctggctcc cagtactatc agtattcaag caataatgcc cgccggaggc ctcttcacag
     1321 tagtgccatg gaggtacaga caaagaaagt ccgaaaagtt cctccgggtt tgccgtcttc
     1381 agtctacgct ccttcagcca gcactgccga ctacaacagg gactcgccag gctatccttc
     1441 ctccaagcca gcagccagca ctttccctag ctccttcttc atgcaagatg gccatcacag
     1501 cagcgaccct tggagctcct ccagcgggat gaatcagccc ggctacggag ggatgctggg
     1561 caattcttct catatcccac agtccagcag ctactgtagc ctgcatccac atgaacgttt
     1621 gagctatcca tcccactcct cggcagacat caactccagt cttcctccga tgtccacgtt
     1681 ccatcgtagt ggcacaaacc attacagcac ctcttcctgc acaccccctg ccaacggaac
     1741 agacagtata atggcaaaca gaggaactgg ggcagcaggc agctcgcaga ctggagacgc
     1801 tctagggaaa gccctagctt cgatctattc tcctgaccac acgaacaaca gcttttcctc
     1861 caatccttca actcctgtgg gctcccctcc ttcactctca ggcacagctg tttggtctag
     1921 aaatggagga caggcctcgt catctcccaa ttatgaagga cccttgcact cactgcaaag
     1981 ccgaatcgaa gaccgtttgg aaagactgga cgatgcgatt catgttctcc ggaaccacgc
     2041 agtgggcccg tccacagctg tgcctggtgg ccatggggac atgcatggga tcatgggacc
     2101 ctcccacaac ggagcgatgg gtagcctggg ctcagggtac ggaactagtc ttctctcagc
     2161 caacagacac tcgctcatgg ttggggccca ccgtgaagat ggcgtggctc tgagaggcag
     2221 ccattctctc ctgccaaacc aggttccggt cccacaactt ccggtccagt ctgcaacttc
     2281 ccctgacttg aacccacccc aagaccctta cagagggatg ccaccaggcc tccagggcca
     2341 gagcgtgtct tctggtagct ctgagatcaa atccgacgac gagggcgatg agaacctgca
     2401 agacacaaaa tcttctgagg acaagaaatt agatgacgac aagaaggata tcaaatcaat
     2461 tactaggtca agatctagca ataacgatga tgaggacctg accccagagc agaaggctga
     2521 gcgcgagaag gaacggagga tggccaataa tgcccgtgag cgcctgaggg tccgagatat
     2581 caacgaggct ttcaaggagc ttggccgtat ggtgcagctc cacctgaaga gcgacaagcc
     2641 ccagaccaag ctcctgattc tccaccaggc cgtggctgtc atcctcagcc tggagcagca
     2701 agttcgagaa aggaatctga acccgaaagc tgcctgtctg aaaagaaggg aggaagagaa
     2761 ggtgtcctca gagcctcccc cactctcctt ggctggccca caccctggga tgggagacgc
     2821 agcgaatcac atgggacaga tgtgaaaagg tccaagttgc taccttgctt cattaaacaa
     2881 gagaccactt ccttaacagc tgtattaccc taaacccaca taaacactgc tccttaaccc
     2941 cgtttttttt tgtaatataa gacaagtctg agtagttatg aatcgcagac gcaagaggtt
     3001 tcagcattcc caattatcaa aaaacagaaa aacaaacaaa aaaatgaatg aaagaaagaa
     3061 agaaagaaaa aaatgcaact tgagggacga cttctttaac atatcactct gaatgtgcga
     3121 agcggtatgt acaggctgag acacagccca gagactgaat ggcaatcctc ccacactgtg
     3181 gagcaatgca tttgtgccta aacttctttt ggaaaaaaaa aatataatta atttgtaagt
     3241 ctgaaaaaaa tatttaattt aaaaaaaaat tgtaaacttg caataatgaa aaagtgtact
     3301 tctgaagaaa acgacatgaa cgtttttgtt ggtattcacg tcagctagtg tttctaatta
     3361 ccggatattg aataggggaa gcccggctgc cctcgtaaca aaaccagcaa acgtcctgat
     3421 ggcaacgaag tgatgacatt agccattcct tagggtagga gggacagatg gatgttatag
     3481 acctatgaca aatatatata taaatatata tataaatata tattaaaaat ttagtgacta
     3541 tggtaagctt ttgttgattt gtttcagact tttttctcct gtaaaaaaat agtactgatt
     3601 aactttttta aaagaaagat tttactgtaa atatggattt ttttttttgt ctgatttttg
     3661 tcccttcccc cggtttgtta tcgtaacctg tagtgccaac tctgcttccg gaggggcagt
     3721 gcaggacgaa atgctgaccc tgaagttgct tctcattcac aaatagtaaa aagttgtttc
     3781 tccagtcttt tgggaacaca ggacttaaaa gtcacatcat gtgtaggaat tacatgcagc
     3841 attgcccggg cgaggcaaaa agcgtttgtc tggcttgtgg cgctgccctt gttaccctcc
     3901 cctgggattt tcagaggtac acggttagaa tgctacaatg ttaccactgt gccttccaat
     3961 gtttatatca tcggaaacat aacataatca aagtggctgt gatttaacaa aaaaaacgat
     4021 tcaagtgtta cctacctgtg tagccgaagt agtgtgcagt gaccgagacg tttctgaata
     4081 catggtcaga ttttttttgg aaaaaataca aaaattaaaa aaaaaaaaaa aaaagaaaaa
     4141 aagaaaaaaa aactaaaaaa gaaagtcaag ttcaaaaacc gtcaaatgag aaaattgcaa
     4201 ggagtgtgac agagctgatt gatttttgtt gctttcttga tttttttttc aaaatgggtt
     4261 tactaaaaag tagatgactt acctgcctcc tccttcgtct gaaaaaaaaa aaaaatgcca
     4321 accaatcatg cagcattata acaagcctta taagccctaa agcattaagt tgcacttttg
     4381 tgaggagggg taacgcagta ttctctctgg ccagtatgag tgaagtttat acttaacatt
     4441 tgatagaaac atagatcaaa ctacggcaca gcaactcatc agatagctag cgttgactct
     4501 gggcacaatt gaaccaattc ccatcgtaag tctttccaac aatggacttt ggtgtgtagt
     4561 gcagtgaaca cataggactc ctacgtaagc atttgtcagc atccttttgt ctctaactcg
     4621 gttctgtttt gacagccaca caatcttggc atgtattaag gaaaaaaaaa atccctgttg
     4681 aagtagtttt tccacctatc agcactgagt aaatgccata actccgcgga aatggtctaa
     4741 ataccccatt tgttgtcctg aactaccagt tacatagtga cgaaacacat ctgtaaattt
     4801 tatgcaacca atggcaaacc tatcattatt ttgaaactgt gtatgtaaaa gttatatttt
     4861 tacatgtaga ctcttgttat tatgtgtttt aatacattgt atcagttttt tgtttttttt
     4921 taaactgtgt ggttttaaaa agtcatttaa atgaaatagt gagctacaag aatctgaaat
     4981 ttatgttcat ttctgaaaat gtaagaacaa ataagatagt taccacgtgg tcacctttta
     5041 caaacccatg aacattttga ttagctgtgt gcatgtgtgt gcgtgtgtgc tcttgcgcgt
     5101 gtgtgtgtgt gtgtgtgtgt gtgtatgtgt gtgtgttgaa aattgtaaat atgttcagta
     5161 gcgataaaac taaaatgctt tgatttgttg agaagttcct aaaatgtgga ggtggattga
     5221 aaatgtaggg gaatagcagg aatcaaatct cataaaaagt tcttcgggga ctttgctgtg
     5281 atgcggtggc acaaaggtgc tccaagaagg gcaaagaaga aagacagtaa cttcccctcc
     5341 tccctgaacg atggaaaaca tgtgtacgtg gtctctcacc atgttaaaga ttttctttcc
     5401 gtgatacatt ctgcactcat tttgtatagt ctgccaaggc gggtatccct aggaacaata
     5461 ttattatata ggaaacaggt atcgtccgat cacattcagg agaagcgtat agaaaagaat
     5521 atggtgttta ctctttaggg aactggaaat cctccccgca ttgatggata tcttcagagt
     5581 ggcacttttg atacatgtta tcataaaggt gcttactaaa gcagaatcaa agtttttcaa
     5641 ctctgtaaac aaagcaaaaa attaaatttt taaattaaat catttgagat tttttttttc
     5701 aattggtgct tttatatttt gttctcactc ggacagagaa aaagctgcaa tttcatgttc
     5761 tcaccagctt tgatgtattc attacttggt aatgtaatat ggctattgtc aaattccttt
     5821 tggaaataag caaaagactc cccaaaggcc agcagcagct gctggctact ttctgcttgg
     5881 tgcggaaacc tgatctgacc ctctttgtag taatcaggtg tatctccagt tttaaaaaga
     5941 aggagaaagg aaatgtggcc gttttaacgt gttggttttg ttttgttttg ttttgttttg
     6001 ttttccttgt tgttattttg taattatcaa acccaggtaa gatattggta ttcctgcact
     6061 ggatttttga aagaaactta gcagaagtca ggattaaaat actacacaaa catttcataa
     6121 gtgttcatcc tatactagac atacacgaag gcggtgaggc ttaggtgcag gatcggttta
     6181 agagactttg aaagcaactt ggaacagttg atccacctcc acattaaagt aaattatgaa
     6241 tatgcagaat tagggatctg tccatcttgg agttgttact ctttttgtct tctgtatggc
     6301 agtgatgaac actaatgctt tgacagcttt cagcccaccc agtggtccaa ctgattccaa
     6361 ttcagtcttc cgattcctgg ttttgttttg tctttccact ttttttttcc tatcttgatt
     6421 ttattgttat tgttattgtt attattatta ttattattat tattaatatt catgatgttt
     6481 gttttgatga gggattggga agtgggaggg agtcgaactg agactagggg ctgagaggat
     6541 tttttttttt ccatctttgc atccaacagg cagaatatgg tctgtgtcca aaacggaact
     6601 taagtcagga aggaaaccat tcagcataaa caagcacaac atgtagtctg ccggctgact
     6661 ggaagcataa ataaataaat aaataacaca tacggaggtg aagatggaat gtgctggatt
     6721 ccaagacaat ggggcaccaa ggcctgaggg cctcctcttg actttgcttt ggttatgttt
     6781 gttttcttta gagatgtctt ttctcatggg acttgaagtg actcatctct gtgcagtact
     6841 ggtttcgcca tatgctcatt tcaagtatta tagacatatg taatggtgaa atatatgaac
     6901 tgtggccttt ttcattcttg ttacttgtga tgcaattaag tgaagataag aaaaaaaaaa
     6961 agcagagatt taccatgtat cagtgcctgg ctttttgtta taaagcttcg tctgtctagt
     7021 gctctttttg ctataaaaaa tagactgtag tacaccctag taggaaaaaa aaactaaatt
     7081 taaaaataaa aaaatatatt tggcttattt ttcgcaggag taatcctttt ataccatgga
     7141 tattacaaaa aaaaatgtca gattctgagt atttcttctt tgtagatttt tggaatcatt
     7201 atgagtaaaa gtttgttact ttattttgct atttaaaaga tgttatttta ccatgtgtta
     7261 ctgaaaggaa actgtatggt agagcttctg tttgtttttg ttttcaggtt ttttttgttt
     7321 gtttgttttt agttgtaggt cgcagtatga actttttttt tgtttctcgt tatgttttgt
     7381 tttgtttttg cgactgtaca catagctgca gcattaaaaa cttttaaaaa attgtttaaa
     7441 aaaaaagaaa aaaagggaaa acgttttaaa aaaaaagata aacagttaca ccttgttttc
     7501 aatgtgtggc tgagtgcctc aattttttca tgtttttggt gtatttctga tttgtagaag
     7561 tgtccaaaca ggttgtgtgc cggacttcct tcaagaggcc cacagcccag cttggtctag
     7621 acctgttccc atctgtagtt actcgatgaa gtcatgtaca tgaccgttct gtagcaataa
     7681 atgtgccatt tttataaac
//
