LOCUS       XM_030250387            6942 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus transcription factor 4 (Tcf4), transcript
            variant X29, mRNA.
ACCESSION   XM_030250387
VERSION     XM_030250387.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000084.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6942
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="18"
     gene            1..6942
                     /gene="Tcf4"
                     /gene_synonym="5730422P05Rik; ASP-I2; bHLHb19; E2-2; E2.2;
                     ITF-2; ITF-2b; ITF2; ME2; MITF-2A; MITF-2B; SEF-2; SEF2;
                     SEF2-1; Tcf-4; TFE"
                     /note="transcription factor 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 14
                     mRNAs, 21 ESTs, 13476 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 10 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:21413"
                     /db_xref="MGI:MGI:98506"
     CDS             400..2088
                     /gene="Tcf4"
                     /gene_synonym="5730422P05Rik; ASP-I2; bHLHb19; E2-2; E2.2;
                     ITF-2; ITF-2b; ITF2; ME2; MITF-2A; MITF-2B; SEF-2; SEF2;
                     SEF2-1; Tcf-4; TFE"
                     /codon_start=1
                     /product="transcription factor 4 isoform X15"
                     /protein_id="XP_030106247.1"
                     /db_xref="GeneID:21413"
                     /db_xref="MGI:MGI:98506"
                     /translation="MTISLHLLSIPEYKQSLLGGDMDMGNPGTLSPTKPGSQYYQYSS
                     NNARRRPLHSSAMEVQTKKVRKVPPGLPSSVYAPSASTADYNRDSPGYPSSKPAASTF
                     PSSFFMQDGHHSSDPWSSSSGMNQPGYGGMLGNSSHIPQSSSYCSLHPHERLSYPSHS
                     SADINSSLPPMSTFHRSGTNHYSTSSCTPPANGTDSIMANRGTGAAGSSQTGDALGKA
                     LASIYSPDHTNNSFSSNPSTPVGSPPSLSAGTAVWSRNGGQASSSPNYEGPLHSLQSR
                     IEDRLERLDDAIHVLRNHAVGPSTAVPGGHGDMHGIMGPSHNGAMGSLGSGYGTSLLS
                     ANRHSLMVGAHREDGVALRGSHSLLPNQVPVPQLPVQSATSPDLNPPQDPYRGMPPGL
                     QGQSVSSGSSEIKSDDEGDENLQDTKSSEDKKLDDDKKDIKSITRSRSSNNDDEDLTP
                     EQKAEREKERRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAV
                     ILSLEQQVRERNLNPKAACLKRREEEKVSSEPPPLSLAGPHPGMGDAANHMGQM"
ORIGIN      
        1 ggaggagaag agggaaatca gttagggcgg aaatagatgc tggagagtga gagagaggga
       61 gtgaaagatt gagagagaga gagagagggt gagagagaca ggagagagag agagagagag
      121 agagagagag agagagagag agagagaggc tgagagactt gcctacgttg ctctcatgtt
      181 tgagctgaag tgagaaattg ttactgcaga tgttttcgcc tcctgtaagc agtgggaaaa
      241 atggaccaac ttctttggcg agtggacatt tcactggctc aaatgtagaa gacagaagta
      301 gctcagggtc ctggggaact ggaggccatc caagcccgtc caggaactat ggagatggga
      361 ctccctatga ccacatgact agcagggatc ttgggtcaca tgacaatctc tctccacctt
      421 ttgtcaattc cagaatacaa acagagtctc ctcggagggg acatggatat gggcaatcca
      481 ggaacccttt cgcccaccaa acctggctcc cagtactatc agtattcaag caataatgcc
      541 cgccggaggc ctcttcacag tagtgccatg gaggtacaga caaagaaagt ccgaaaagtt
      601 cctccgggtt tgccgtcttc agtctacgct ccttcagcca gcactgccga ctacaacagg
      661 gactcgccag gctatccttc ctccaagcca gcagccagca ctttccctag ctccttcttc
      721 atgcaagatg gccatcacag cagcgaccct tggagctcct ccagcgggat gaatcagccc
      781 ggctacggag ggatgctggg caattcttct catatcccac agtccagcag ctactgtagc
      841 ctgcatccac atgaacgttt gagctatcca tcccactcct cggcagacat caactccagt
      901 cttcctccga tgtccacgtt ccatcgtagt ggcacaaacc attacagcac ctcttcctgc
      961 acaccccctg ccaacggaac agacagtata atggcaaaca gaggaactgg ggcagcaggc
     1021 agctcgcaga ctggagacgc tctagggaaa gccctagctt cgatctattc tcctgaccac
     1081 acgaacaaca gcttttcctc caatccttca actcctgtgg gctcccctcc ttcactctca
     1141 gcaggcacag ctgtttggtc tagaaatgga ggacaggcct cgtcatctcc caattatgaa
     1201 ggacccttgc actcactgca aagccgaatc gaagaccgtt tggaaagact ggacgatgcg
     1261 attcatgttc tccggaacca cgcagtgggc ccgtccacag ctgtgcctgg tggccatggg
     1321 gacatgcatg ggatcatggg accctcccac aacggagcga tgggtagcct gggctcaggg
     1381 tacggaacta gtcttctctc agccaacaga cactcgctca tggttggggc ccaccgtgaa
     1441 gatggcgtgg ctctgagagg cagccattct ctcctgccaa accaggttcc ggtcccacaa
     1501 cttccggtcc agtctgcaac ttcccctgac ttgaacccac cccaagaccc ttacagaggg
     1561 atgccaccag gcctccaggg ccagagcgtg tcttctggta gctctgagat caaatccgac
     1621 gacgagggcg atgagaacct gcaagacaca aaatcttctg aggacaagaa attagatgac
     1681 gacaagaagg atatcaaatc aattactagg tcaagatcta gcaataacga tgatgaggac
     1741 ctgaccccag agcagaaggc tgagcgcgag aaggaacgga ggatggccaa taatgcccgt
     1801 gagcgcctga gggtccgaga tatcaacgag gctttcaagg agcttggccg tatggtgcag
     1861 ctccacctga agagcgacaa gccccagacc aagctcctga ttctccacca ggccgtggct
     1921 gtcatcctca gcctggagca gcaagttcga gaaaggaatc tgaacccgaa agctgcctgt
     1981 ctgaaaagaa gggaggaaga gaaggtgtcc tcagagcctc ccccactctc cttggctggc
     2041 ccacaccctg ggatgggaga cgcagcgaat cacatgggac agatgtgaaa aggtccaagt
     2101 tgctaccttg cttcattaaa caagagacca cttccttaac agctgtatta ccctaaaccc
     2161 acataaacac tgctccttaa ccccgttttt ttttgtaata taagacaagt ctgagtagtt
     2221 atgaatcgca gacgcaagag gtttcagcat tcccaattat caaaaaacag aaaaacaaac
     2281 aaaaaaatga atgaaagaaa gaaagaaaga aaaaaatgca acttgaggga cgacttcttt
     2341 aacatatcac tctgaatgtg cgaagcggta tgtacaggct gagacacagc ccagagactg
     2401 aatggcaatc ctcccacact gtggagcaat gcatttgtgc ctaaacttct tttggaaaaa
     2461 aaaaatataa ttaatttgta agtctgaaaa aaatatttaa tttaaaaaaa aattgtaaac
     2521 ttgcaataat gaaaaagtgt acttctgaag aaaacgacat gaacgttttt gttggtattc
     2581 acgtcagcta gtgtttctaa ttaccggata ttgaataggg gaagcccggc tgccctcgta
     2641 acaaaaccag caaacgtcct gatggcaacg aagtgatgac attagccatt ccttagggta
     2701 ggagggacag atggatgtta tagacctatg acaaatatat atataaatat atatataaat
     2761 atatattaaa aatttagtga ctatggtaag cttttgttga tttgtttcag acttttttct
     2821 cctgtaaaaa aatagtactg attaactttt ttaaaagaaa gattttactg taaatatgga
     2881 tttttttttt tgtctgattt ttgtcccttc ccccggtttg ttatcgtaac ctgtagtgcc
     2941 aactctgctt ccggaggggc agtgcaggac gaaatgctga ccctgaagtt gcttctcatt
     3001 cacaaatagt aaaaagttgt ttctccagtc ttttgggaac acaggactta aaagtcacat
     3061 catgtgtagg aattacatgc agcattgccc gggcgaggca aaaagcgttt gtctggcttg
     3121 tggcgctgcc cttgttaccc tcccctggga ttttcagagg tacacggtta gaatgctaca
     3181 atgttaccac tgtgccttcc aatgtttata tcatcggaaa cataacataa tcaaagtggc
     3241 tgtgatttaa caaaaaaaac gattcaagtg ttacctacct gtgtagccga agtagtgtgc
     3301 agtgaccgag acgtttctga atacatggtc agattttttt tggaaaaaat acaaaaatta
     3361 aaaaaaaaaa aaaaaaagaa aaaaagaaaa aaaaactaaa aaagaaagtc aagttcaaaa
     3421 accgtcaaat gagaaaattg caaggagtgt gacagagctg attgattttt gttgctttct
     3481 tgattttttt ttcaaaatgg gtttactaaa aagtagatga cttacctgcc tcctccttcg
     3541 tctgaaaaaa aaaaaaaatg ccaaccaatc atgcagcatt ataacaagcc ttataagccc
     3601 taaagcatta agttgcactt ttgtgaggag gggtaacgca gtattctctc tggccagtat
     3661 gagtgaagtt tatacttaac atttgataga aacatagatc aaactacggc acagcaactc
     3721 atcagatagc tagcgttgac tctgggcaca attgaaccaa ttcccatcgt aagtctttcc
     3781 aacaatggac tttggtgtgt agtgcagtga acacatagga ctcctacgta agcatttgtc
     3841 agcatccttt tgtctctaac tcggttctgt tttgacagcc acacaatctt ggcatgtatt
     3901 aaggaaaaaa aaaatccctg ttgaagtagt ttttccacct atcagcactg agtaaatgcc
     3961 ataactccgc ggaaatggtc taaatacccc atttgttgtc ctgaactacc agttacatag
     4021 tgacgaaaca catctgtaaa ttttatgcaa ccaatggcaa acctatcatt attttgaaac
     4081 tgtgtatgta aaagttatat ttttacatgt agactcttgt tattatgtgt tttaatacat
     4141 tgtatcagtt ttttgttttt ttttaaactg tgtggtttta aaaagtcatt taaatgaaat
     4201 agtgagctac aagaatctga aatttatgtt catttctgaa aatgtaagaa caaataagat
     4261 agttaccacg tggtcacctt ttacaaaccc atgaacattt tgattagctg tgtgcatgtg
     4321 tgtgcgtgtg tgctcttgcg cgtgtgtgtg tgtgtgtgtg tgtgtgtatg tgtgtgtgtt
     4381 gaaaattgta aatatgttca gtagcgataa aactaaaatg ctttgatttg ttgagaagtt
     4441 cctaaaatgt ggaggtggat tgaaaatgta ggggaatagc aggaatcaaa tctcataaaa
     4501 agttcttcgg ggactttgct gtgatgcggt ggcacaaagg tgctccaaga agggcaaaga
     4561 agaaagacag taacttcccc tcctccctga acgatggaaa acatgtgtac gtggtctctc
     4621 accatgttaa agattttctt tccgtgatac attctgcact cattttgtat agtctgccaa
     4681 ggcgggtatc cctaggaaca atattattat ataggaaaca ggtatcgtcc gatcacattc
     4741 aggagaagcg tatagaaaag aatatggtgt ttactcttta gggaactgga aatcctcccc
     4801 gcattgatgg atatcttcag agtggcactt ttgatacatg ttatcataaa ggtgcttact
     4861 aaagcagaat caaagttttt caactctgta aacaaagcaa aaaattaaat ttttaaatta
     4921 aatcatttga gatttttttt ttcaattggt gcttttatat tttgttctca ctcggacaga
     4981 gaaaaagctg caatttcatg ttctcaccag ctttgatgta ttcattactt ggtaatgtaa
     5041 tatggctatt gtcaaattcc ttttggaaat aagcaaaaga ctccccaaag gccagcagca
     5101 gctgctggct actttctgct tggtgcggaa acctgatctg accctctttg tagtaatcag
     5161 gtgtatctcc agttttaaaa agaaggagaa aggaaatgtg gccgttttaa cgtgttggtt
     5221 ttgttttgtt ttgttttgtt ttgttttcct tgttgttatt ttgtaattat caaacccagg
     5281 taagatattg gtattcctgc actggatttt tgaaagaaac ttagcagaag tcaggattaa
     5341 aatactacac aaacatttca taagtgttca tcctatacta gacatacacg aaggcggtga
     5401 ggcttaggtg caggatcggt ttaagagact ttgaaagcaa cttggaacag ttgatccacc
     5461 tccacattaa agtaaattat gaatatgcag aattagggat ctgtccatct tggagttgtt
     5521 actctttttg tcttctgtat ggcagtgatg aacactaatg ctttgacagc tttcagccca
     5581 cccagtggtc caactgattc caattcagtc ttccgattcc tggttttgtt ttgtctttcc
     5641 actttttttt tcctatcttg attttattgt tattgttatt gttattatta ttattattat
     5701 tattattaat attcatgatg tttgttttga tgagggattg ggaagtggga gggagtcgaa
     5761 ctgagactag gggctgagag gatttttttt tttccatctt tgcatccaac aggcagaata
     5821 tggtctgtgt ccaaaacgga acttaagtca ggaaggaaac cattcagcat aaacaagcac
     5881 aacatgtagt ctgccggctg actggaagca taaataaata aataaataac acatacggag
     5941 gtgaagatgg aatgtgctgg attccaagac aatggggcac caaggcctga gggcctcctc
     6001 ttgactttgc tttggttatg tttgttttct ttagagatgt cttttctcat gggacttgaa
     6061 gtgactcatc tctgtgcagt actggtttcg ccatatgctc atttcaagta ttatagacat
     6121 atgtaatggt gaaatatatg aactgtggcc tttttcattc ttgttacttg tgatgcaatt
     6181 aagtgaagat aagaaaaaaa aaaagcagag atttaccatg tatcagtgcc tggctttttg
     6241 ttataaagct tcgtctgtct agtgctcttt ttgctataaa aaatagactg tagtacaccc
     6301 tagtaggaaa aaaaaactaa atttaaaaat aaaaaaatat atttggctta tttttcgcag
     6361 gagtaatcct tttataccat ggatattaca aaaaaaaatg tcagattctg agtatttctt
     6421 ctttgtagat ttttggaatc attatgagta aaagtttgtt actttatttt gctatttaaa
     6481 agatgttatt ttaccatgtg ttactgaaag gaaactgtat ggtagagctt ctgtttgttt
     6541 ttgttttcag gttttttttg tttgtttgtt tttagttgta ggtcgcagta tgaacttttt
     6601 ttttgtttct cgttatgttt tgttttgttt ttgcgactgt acacatagct gcagcattaa
     6661 aaacttttaa aaaattgttt aaaaaaaaag aaaaaaaggg aaaacgtttt aaaaaaaaag
     6721 ataaacagtt acaccttgtt ttcaatgtgt ggctgagtgc ctcaattttt tcatgttttt
     6781 ggtgtatttc tgatttgtag aagtgtccaa acaggttgtg tgccggactt ccttcaagag
     6841 gcccacagcc cagcttggtc tagacctgtt cccatctgta gttactcgat gaagtcatgt
     6901 acatgaccgt tctgtagcaa taaatgtgcc atttttataa ac
//
