LOCUS       XM_030250381            8389 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus transcription factor 4 (Tcf4), transcript
            variant X23, mRNA.
ACCESSION   XM_030250381
VERSION     XM_030250381.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000084.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8389
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="18"
     gene            1..8389
                     /gene="Tcf4"
                     /gene_synonym="5730422P05Rik; ASP-I2; bHLHb19; E2-2; E2.2;
                     ITF-2; ITF-2b; ITF2; ME2; MITF-2A; MITF-2B; SEF-2; SEF2;
                     SEF2-1; Tcf-4; TFE"
                     /note="transcription factor 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     mRNAs, 18 ESTs, 13267 long SRA reads, 4 Proteins, and 94%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 31 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:21413"
                     /db_xref="MGI:MGI:98506"
     CDS             1598..3535
                     /gene="Tcf4"
                     /gene_synonym="5730422P05Rik; ASP-I2; bHLHb19; E2-2; E2.2;
                     ITF-2; ITF-2b; ITF2; ME2; MITF-2A; MITF-2B; SEF-2; SEF2;
                     SEF2-1; Tcf-4; TFE"
                     /codon_start=1
                     /product="transcription factor 4 isoform X11"
                     /protein_id="XP_030106241.1"
                     /db_xref="GeneID:21413"
                     /db_xref="MGI:MGI:98506"
                     /translation="MFSPPVSSGKNGPTSLASGHFTGSNVEDRSSSGSWGTGGHPSPS
                     RNYGDGTPYDHMTSRDLGSHDNLSPPFVNSRIQSKTERGSYSSYGRENVQGCHQQSLL
                     GGDMDMGNPGTLSPTKPGSQYYQYSSNNARRRPLHSSAMEVQTKKVRKVPPGLPSSVY
                     APSASTADYNRDSPGYPSSKPAASTFPSSFFMQDGHHSSDPWSSSSGMNQPGYGGMLG
                     NSSHIPQSSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNHYSTSSCTPPAN
                     GTDSIMANRGTGAAGSSQTGDALGKALASIYSPDHTNNSFSSNPSTPVGSPPSLSGTA
                     VWSRNGGQASSSPNYEGPLHSLQSRIEDRLERLDDAIHVLRNHAVGPSTAVPGGHGDM
                     HGIMGPSHNGAMGSLGSGYGTSLLSANRHSLMVGAHREDGVALRGSHSLLPNQVPVPQ
                     LPVQSATSPDLNPPQDPYRGMPPGLQGQSVSSGSSEIKSDDEGDENLQDTKSSEDKKL
                     DDDKKDIKSITRSRSSNNDDEDLTPEQKAEREKERRMANNARERLRVRDINEAFKELG
                     RMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRERNLNPKAACLKRREEEKVSSEPP
                     PLSLAGPHPGMGDAANHMGQM"
ORIGIN      
        1 ccacgagtta aaatcagaag atagagatga ggacgttctc actgccagat ggcttgggaa
       61 catgggtgaa ggtggactct ggtcacatac tgtctttcaa ggtgggctct gtcacttact
      121 atagagagta gttttagtta ggcaaattcg tgctgtttaa cgaacttggg ctgtgggtca
      181 ggatctgtga tatttcactt gcttctgttg cggtgtaggt caagtaagga tgtgaatggt
      241 actctacctt caaggccagc atcaatatgg cctacatttg tgaaattctt agaacactgt
      301 ctggatcaga ataagctttc tgttggggga cccggacact attttttgga tacgtgagtt
      361 atctacaatt gcaaatgtct aggttagggg tatcagtgag tcagtaagaa attagggatg
      421 gaagcggtat atttctatag tagtagcctc acctgtatgc gtatcatata ggtatctcaa
      481 agtcccattg ctattttgtt gaggagaaaa caggtttgaa aaggtaattg tttggcccaa
      541 attggaagtt cctggttttt ggttcaagag ccatacgagt cttacatcaa taaaggtaga
      601 cttttgcact aaccaagttc tcacactccc gggagcttat aaaagaaggg gtgggaccga
      661 gagggagagg ggagggaccc tcctactctt ccagctcagg gtcacgcttg gcttggtggc
      721 ctttccccac accgcccaag ccggcctgaa aactctgcat ccacactgac agggacactg
      781 ctgcattgag gccctcacgg catcttccgg gcctcccggc gaggtctttc acgctgcggg
      841 aacaacgctt ttgagtcaga gatcaaggcc ggccagggaa cggggcgcca agcgcgctcc
      901 gagagccacg acctgagtga gtcccacccg ccggcgggac cgccctggtt cccggaggag
      961 gcgtggccta gagcgccgcc atcttggcgg cctctctagg cgctctgttt accactctat
     1021 ggtcgcgtgc tcccgccccg cccctcccca gtcattgtct ggtggagcag ccgcggccgc
     1081 agcgccttct ctttataagc cgcagtgccc ggatgtgaat ggattacaat gtatctttca
     1141 gggaaaccta ttattatcaa tgtgactcct cgggggagtc aatgatggtg ttggggagga
     1201 ggatgatgat gagacgcctc taaacttgga acaagtttag gactttgaaa gagaagagaa
     1261 aaaaaaatac aaccaacaag accgaagaac aattataact atccagtgtt gattattttt
     1321 ataaacaata cgaaaaagtt gtcggatttt tttttttaat gattactttt tggggggagg
     1381 gaattttgtt acagtttgat gatggaaaat gcaaaaaccg agccaggtgc ataatcttgt
     1441 aatctgtggc taaccctgga acaggactga cttctattta aaatactctt ttgggggaac
     1501 actcatgtga gacactaagt tcttgcagaa gatttttgtc tctcttttta aagtctcttt
     1561 ccttggaata ttgtgagcat atttgtggcc attgaagatg ttttcgcctc ctgtaagcag
     1621 tgggaaaaat ggaccaactt ctttggcgag tggacatttc actggctcaa atgtagaaga
     1681 cagaagtagc tcagggtcct ggggaactgg aggccatcca agcccgtcca ggaactatgg
     1741 agatgggact ccctatgacc acatgactag cagggatctt gggtcacatg acaatctctc
     1801 tccacctttt gtcaattcca gaatacaaag taaaacagaa aggggctcat actcatctta
     1861 tgggagagaa aacgttcagg gttgccacca gcagagtctc ctcggagggg acatggatat
     1921 gggcaatcca ggaacccttt cgcccaccaa acctggctcc cagtactatc agtattcaag
     1981 caataatgcc cgccggaggc ctcttcacag tagtgccatg gaggtacaga caaagaaagt
     2041 ccgaaaagtt cctccgggtt tgccgtcttc agtctacgct ccttcagcca gcactgccga
     2101 ctacaacagg gactcgccag gctatccttc ctccaagcca gcagccagca ctttccctag
     2161 ctccttcttc atgcaagatg gccatcacag cagcgaccct tggagctcct ccagcgggat
     2221 gaatcagccc ggctacggag ggatgctggg caattcttct catatcccac agtccagcag
     2281 ctactgtagc ctgcatccac atgaacgttt gagctatcca tcccactcct cggcagacat
     2341 caactccagt cttcctccga tgtccacgtt ccatcgtagt ggcacaaacc attacagcac
     2401 ctcttcctgc acaccccctg ccaacggaac agacagtata atggcaaaca gaggaactgg
     2461 ggcagcaggc agctcgcaga ctggagacgc tctagggaaa gccctagctt cgatctattc
     2521 tcctgaccac acgaacaaca gcttttcctc caatccttca actcctgtgg gctcccctcc
     2581 ttcactctca ggcacagctg tttggtctag aaatggagga caggcctcgt catctcccaa
     2641 ttatgaagga cccttgcact cactgcaaag ccgaatcgaa gaccgtttgg aaagactgga
     2701 cgatgcgatt catgttctcc ggaaccacgc agtgggcccg tccacagctg tgcctggtgg
     2761 ccatggggac atgcatggga tcatgggacc ctcccacaac ggagcgatgg gtagcctggg
     2821 ctcagggtac ggaactagtc ttctctcagc caacagacac tcgctcatgg ttggggccca
     2881 ccgtgaagat ggcgtggctc tgagaggcag ccattctctc ctgccaaacc aggttccggt
     2941 cccacaactt ccggtccagt ctgcaacttc ccctgacttg aacccacccc aagaccctta
     3001 cagagggatg ccaccaggcc tccagggcca gagcgtgtct tctggtagct ctgagatcaa
     3061 atccgacgac gagggcgatg agaacctgca agacacaaaa tcttctgagg acaagaaatt
     3121 agatgacgac aagaaggata tcaaatcaat tactaggtca agatctagca ataacgatga
     3181 tgaggacctg accccagagc agaaggctga gcgcgagaag gaacggagga tggccaataa
     3241 tgcccgtgag cgcctgaggg tccgagatat caacgaggct ttcaaggagc ttggccgtat
     3301 ggtgcagctc cacctgaaga gcgacaagcc ccagaccaag ctcctgattc tccaccaggc
     3361 cgtggctgtc atcctcagcc tggagcagca agttcgagaa aggaatctga acccgaaagc
     3421 tgcctgtctg aaaagaaggg aggaagagaa ggtgtcctca gagcctcccc cactctcctt
     3481 ggctggccca caccctggga tgggagacgc agcgaatcac atgggacaga tgtgaaaagg
     3541 tccaagttgc taccttgctt cattaaacaa gagaccactt ccttaacagc tgtattaccc
     3601 taaacccaca taaacactgc tccttaaccc cgtttttttt tgtaatataa gacaagtctg
     3661 agtagttatg aatcgcagac gcaagaggtt tcagcattcc caattatcaa aaaacagaaa
     3721 aacaaacaaa aaaatgaatg aaagaaagaa agaaagaaaa aaatgcaact tgagggacga
     3781 cttctttaac atatcactct gaatgtgcga agcggtatgt acaggctgag acacagccca
     3841 gagactgaat ggcaatcctc ccacactgtg gagcaatgca tttgtgccta aacttctttt
     3901 ggaaaaaaaa aatataatta atttgtaagt ctgaaaaaaa tatttaattt aaaaaaaaat
     3961 tgtaaacttg caataatgaa aaagtgtact tctgaagaaa acgacatgaa cgtttttgtt
     4021 ggtattcacg tcagctagtg tttctaatta ccggatattg aataggggaa gcccggctgc
     4081 cctcgtaaca aaaccagcaa acgtcctgat ggcaacgaag tgatgacatt agccattcct
     4141 tagggtagga gggacagatg gatgttatag acctatgaca aatatatata taaatatata
     4201 tataaatata tattaaaaat ttagtgacta tggtaagctt ttgttgattt gtttcagact
     4261 tttttctcct gtaaaaaaat agtactgatt aactttttta aaagaaagat tttactgtaa
     4321 atatggattt ttttttttgt ctgatttttg tcccttcccc cggtttgtta tcgtaacctg
     4381 tagtgccaac tctgcttccg gaggggcagt gcaggacgaa atgctgaccc tgaagttgct
     4441 tctcattcac aaatagtaaa aagttgtttc tccagtcttt tgggaacaca ggacttaaaa
     4501 gtcacatcat gtgtaggaat tacatgcagc attgcccggg cgaggcaaaa agcgtttgtc
     4561 tggcttgtgg cgctgccctt gttaccctcc cctgggattt tcagaggtac acggttagaa
     4621 tgctacaatg ttaccactgt gccttccaat gtttatatca tcggaaacat aacataatca
     4681 aagtggctgt gatttaacaa aaaaaacgat tcaagtgtta cctacctgtg tagccgaagt
     4741 agtgtgcagt gaccgagacg tttctgaata catggtcaga ttttttttgg aaaaaataca
     4801 aaaattaaaa aaaaaaaaaa aaaagaaaaa aagaaaaaaa aactaaaaaa gaaagtcaag
     4861 ttcaaaaacc gtcaaatgag aaaattgcaa ggagtgtgac agagctgatt gatttttgtt
     4921 gctttcttga tttttttttc aaaatgggtt tactaaaaag tagatgactt acctgcctcc
     4981 tccttcgtct gaaaaaaaaa aaaaatgcca accaatcatg cagcattata acaagcctta
     5041 taagccctaa agcattaagt tgcacttttg tgaggagggg taacgcagta ttctctctgg
     5101 ccagtatgag tgaagtttat acttaacatt tgatagaaac atagatcaaa ctacggcaca
     5161 gcaactcatc agatagctag cgttgactct gggcacaatt gaaccaattc ccatcgtaag
     5221 tctttccaac aatggacttt ggtgtgtagt gcagtgaaca cataggactc ctacgtaagc
     5281 atttgtcagc atccttttgt ctctaactcg gttctgtttt gacagccaca caatcttggc
     5341 atgtattaag gaaaaaaaaa atccctgttg aagtagtttt tccacctatc agcactgagt
     5401 aaatgccata actccgcgga aatggtctaa ataccccatt tgttgtcctg aactaccagt
     5461 tacatagtga cgaaacacat ctgtaaattt tatgcaacca atggcaaacc tatcattatt
     5521 ttgaaactgt gtatgtaaaa gttatatttt tacatgtaga ctcttgttat tatgtgtttt
     5581 aatacattgt atcagttttt tgtttttttt taaactgtgt ggttttaaaa agtcatttaa
     5641 atgaaatagt gagctacaag aatctgaaat ttatgttcat ttctgaaaat gtaagaacaa
     5701 ataagatagt taccacgtgg tcacctttta caaacccatg aacattttga ttagctgtgt
     5761 gcatgtgtgt gcgtgtgtgc tcttgcgcgt gtgtgtgtgt gtgtgtgtgt gtgtatgtgt
     5821 gtgtgttgaa aattgtaaat atgttcagta gcgataaaac taaaatgctt tgatttgttg
     5881 agaagttcct aaaatgtgga ggtggattga aaatgtaggg gaatagcagg aatcaaatct
     5941 cataaaaagt tcttcgggga ctttgctgtg atgcggtggc acaaaggtgc tccaagaagg
     6001 gcaaagaaga aagacagtaa cttcccctcc tccctgaacg atggaaaaca tgtgtacgtg
     6061 gtctctcacc atgttaaaga ttttctttcc gtgatacatt ctgcactcat tttgtatagt
     6121 ctgccaaggc gggtatccct aggaacaata ttattatata ggaaacaggt atcgtccgat
     6181 cacattcagg agaagcgtat agaaaagaat atggtgttta ctctttaggg aactggaaat
     6241 cctccccgca ttgatggata tcttcagagt ggcacttttg atacatgtta tcataaaggt
     6301 gcttactaaa gcagaatcaa agtttttcaa ctctgtaaac aaagcaaaaa attaaatttt
     6361 taaattaaat catttgagat tttttttttc aattggtgct tttatatttt gttctcactc
     6421 ggacagagaa aaagctgcaa tttcatgttc tcaccagctt tgatgtattc attacttggt
     6481 aatgtaatat ggctattgtc aaattccttt tggaaataag caaaagactc cccaaaggcc
     6541 agcagcagct gctggctact ttctgcttgg tgcggaaacc tgatctgacc ctctttgtag
     6601 taatcaggtg tatctccagt tttaaaaaga aggagaaagg aaatgtggcc gttttaacgt
     6661 gttggttttg ttttgttttg ttttgttttg ttttccttgt tgttattttg taattatcaa
     6721 acccaggtaa gatattggta ttcctgcact ggatttttga aagaaactta gcagaagtca
     6781 ggattaaaat actacacaaa catttcataa gtgttcatcc tatactagac atacacgaag
     6841 gcggtgaggc ttaggtgcag gatcggttta agagactttg aaagcaactt ggaacagttg
     6901 atccacctcc acattaaagt aaattatgaa tatgcagaat tagggatctg tccatcttgg
     6961 agttgttact ctttttgtct tctgtatggc agtgatgaac actaatgctt tgacagcttt
     7021 cagcccaccc agtggtccaa ctgattccaa ttcagtcttc cgattcctgg ttttgttttg
     7081 tctttccact ttttttttcc tatcttgatt ttattgttat tgttattgtt attattatta
     7141 ttattattat tattaatatt catgatgttt gttttgatga gggattggga agtgggaggg
     7201 agtcgaactg agactagggg ctgagaggat tttttttttt ccatctttgc atccaacagg
     7261 cagaatatgg tctgtgtcca aaacggaact taagtcagga aggaaaccat tcagcataaa
     7321 caagcacaac atgtagtctg ccggctgact ggaagcataa ataaataaat aaataacaca
     7381 tacggaggtg aagatggaat gtgctggatt ccaagacaat ggggcaccaa ggcctgaggg
     7441 cctcctcttg actttgcttt ggttatgttt gttttcttta gagatgtctt ttctcatggg
     7501 acttgaagtg actcatctct gtgcagtact ggtttcgcca tatgctcatt tcaagtatta
     7561 tagacatatg taatggtgaa atatatgaac tgtggccttt ttcattcttg ttacttgtga
     7621 tgcaattaag tgaagataag aaaaaaaaaa agcagagatt taccatgtat cagtgcctgg
     7681 ctttttgtta taaagcttcg tctgtctagt gctctttttg ctataaaaaa tagactgtag
     7741 tacaccctag taggaaaaaa aaactaaatt taaaaataaa aaaatatatt tggcttattt
     7801 ttcgcaggag taatcctttt ataccatgga tattacaaaa aaaaatgtca gattctgagt
     7861 atttcttctt tgtagatttt tggaatcatt atgagtaaaa gtttgttact ttattttgct
     7921 atttaaaaga tgttatttta ccatgtgtta ctgaaaggaa actgtatggt agagcttctg
     7981 tttgtttttg ttttcaggtt ttttttgttt gtttgttttt agttgtaggt cgcagtatga
     8041 actttttttt tgtttctcgt tatgttttgt tttgtttttg cgactgtaca catagctgca
     8101 gcattaaaaa cttttaaaaa attgtttaaa aaaaaagaaa aaaagggaaa acgttttaaa
     8161 aaaaaagata aacagttaca ccttgttttc aatgtgtggc tgagtgcctc aattttttca
     8221 tgtttttggt gtatttctga tttgtagaag tgtccaaaca ggttgtgtgc cggacttcct
     8281 tcaagaggcc cacagcccag cttggtctag acctgttccc atctgtagtt actcgatgaa
     8341 gtcatgtaca tgaccgttct gtagcaataa atgtgccatt tttataaac
//
