LOCUS       NM_001285425            3865 bp    mRNA    linear   ROD 17-SEP-2024
DEFINITION  Mus musculus transcription factor 24 (Tcf24), mRNA.
ACCESSION   NM_001285425 XM_003688767 XM_003689325 XM_006495432
VERSION     NM_001285425.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3865)
  AUTHORS   Butts,J.C., Wu,S.R., Durham,M.A., Dhindsa,R.S., Revelli,J.P.,
            Ljungberg,M.C., Saulnier,O., McLaren,M.E., Taylor,M.D. and
            Zoghbi,H.Y.
  TITLE     A single-cell transcriptomic map of the developing Atoh1 lineage
            identifies neural fate decisions and neuronal diversity in the
            hindbrain
  JOURNAL   Dev Cell 59 (16), 2171-2188 (2024)
   PUBMED   39106860
REFERENCE   2  (bases 1 to 3865)
  AUTHORS   Liu,H., Zhou,R., Li,S., Dong,J., Fang,Y., Luo,Y., Su,H., Lai,B.,
            Liang,L., Zhang,D., Zhang,Y., Shyy,J.Y., Zhou,B., Yuan,Z. and
            Wang,Y.
  TITLE     Epigenetic repression of Cend1 by lysine-specific demethylase 1 is
            essential for murine heart development
  JOURNAL   iScience 27 (1), 108722 (2023)
   PUBMED   38226173
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3865)
  AUTHORS   Nishimura,M., Yokoi,N., Miki,T., Horikawa,Y., Yoshioka,H.,
            Takeda,J., Ohara,O. and Seino,S.
  TITLE     Construction of a multi-functional cDNA library specific for mouse
            pancreatic islets and its application to microarray
  JOURNAL   DNA Res 11 (5), 315-323 (2004)
   PUBMED   15747579
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC102570.8.
            
            On or before Jun 21, 2019 this sequence version replaced
            XM_006495432.3, NM_001285425.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.102693.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-87                AC102570.8         127958-128044
            88-506              AC102570.8         128251-128669
            507-3865            AC102570.8         132247-135605
FEATURES             Location/Qualifiers
     source          1..3865
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 2.24 cM"
     gene            1..3865
                     /gene="Tcf24"
                     /gene_synonym="100039596; Gm10567; Gm2330"
                     /note="transcription factor 24"
                     /db_xref="GeneID:100039596"
                     /db_xref="MGI:MGI:3780500"
     exon            1..87
                     /gene="Tcf24"
                     /gene_synonym="100039596; Gm10567; Gm2330"
                     /inference="alignment:Splign:2.1.0"
     exon            88..506
                     /gene="Tcf24"
                     /gene_synonym="100039596; Gm10567; Gm2330"
                     /inference="alignment:Splign:2.1.0"
     CDS             120..620
                     /gene="Tcf24"
                     /gene_synonym="100039596; Gm10567; Gm2330"
                     /codon_start=1
                     /product="transcription factor 24"
                     /protein_id="NP_001272354.1"
                     /db_xref="CCDS:CCDS69862.1"
                     /db_xref="GeneID:100039596"
                     /db_xref="MGI:MGI:3780500"
                     /translation="MERGRPASSPRSAESAAPPAAARDWSPGPTGTGPTGLSGVAARS
                     GGGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTR
                     SLQDDTDAPGDPGLGALRGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKASHSNT
                     STASQP"
     exon            507..3865
                     /gene="Tcf24"
                     /gene_synonym="100039596; Gm10567; Gm2330"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3844..3849
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tcf24"
                     /gene_synonym="100039596; Gm10567; Gm2330"
                     /note="hexamer: AATAAA"
     polyA_site      3865
                     /gene="Tcf24"
                     /gene_synonym="100039596; Gm10567; Gm2330"
                     /note="major polyA site"
ORIGIN      
        1 atggagtgac ccacccgctc gacgcccttg gccgcctagc cctgctcagc cgaaccccgc
       61 acggccgctg cggtgggggg aggaaagtgc acgccgggga aatcggagcc ggagtcgcca
      121 tggagcgcgg ccgtcccgct agcagcccac gcagcgcgga gtccgccgcg ccgcccgccg
      181 ccgcccgcga ctggagccca ggaccgaccg ggaccgggcc aacaggcctc agcggggtcg
      241 cggcgcgctc cgggggtggc cgtccagccg ccgcgaacgc cgcgcgggag cgcagccgag
      301 tgcaaaccct gcgacacgcc ttcctggagc tgcagcgcac gctgccgtcg gtgccgccag
      361 acaccaagct gtccaagctg gacgtgctgc tgctggccac cacctacatc gcccacctca
      421 cccgcagcct gcaggacgac accgacgcgc ccggagaccc cggtctgggc gccttgcgag
      481 gcgacggcta tctgcaccca gttaagaagt ggcccatgcg atcaagactg tatatcggtg
      541 cgactggtca gtttctgaaa cattctgtct ctggagaaaa ggcaagccat agcaacactt
      601 caacggcctc acagccgtag gtgtgtgctg gggtctggca gagcggtggc tattgttttt
      661 aaagactgtg aaataattgt acttattgca ttggacctaa cagacactgc ttctgaaagt
      721 ttacattgga acctgtagtg gaatatcaaa atctgtataa ataaatgtgg aatagaataa
      781 tcagccctat ataaaaatat atagcttatt tagtcattgt gccaatagta aagagaagct
      841 attcacaaaa aagaaacaca cacacaagca tagagttgta ctcccccaga caatgcgtac
      901 actgtctgtt acaaactgaa aaactgatgt ttccttttag ttttaggaaa tagaacttgg
      961 aacagacatg gtggtatgtc tataacccca gcattccaag atgcagagac aggcagatct
     1021 ctgagttcaa ggccagcctg ctctacatag agagtttgag gccagccagg actacatagt
     1081 gaaaccctgt ttcaaaaaat aaacaaaatg tgtttatatt agtattcaat ttttgtgaaa
     1141 gccagcatgt actttgagtt ggccatttca gttagaaaat ataggatcat tattcagctt
     1201 gtgtgtatga atgtgtgtgt gaaaattgtt gcagcaactt ttatctgtag ttattttttc
     1261 cagatagaaa atgtatatgg agtattagaa atgttttggt ttttttataa aacatggtat
     1321 gatcaccttt caagaggtta gtcaatatta agatctaacc atgcaggccc gtatgagcag
     1381 aggctcagga gacactggct ggcagggttc atctctcttc tggcaacacc atatccatcc
     1441 tgcctctttt cccagcctgg atagttaggc agccaggaag tggcattttc agcactgatt
     1501 tgggagttct gcctgtgatc tgaaccatga gagagtctac agacacagat aaactcaggc
     1561 ttgagtctgc cccttgatga accagctgcc ctttcttgct gcaccacaca ccagcacagg
     1621 cccagagata gcttctcttc tgaccatacc aaccgtttgt gttcagcaag agtcactgga
     1681 aaatcagttt gggctgcctt agtgggtaaa ggtgcttgcc accgagcctg acatgatgcg
     1741 ttcagcccca caacctaccc tggaaagaga gaactgactc ctgaatgttg gcctctgacc
     1801 tccacttgat ggtatgcaca tcctacaaca cagaaaacaa ataaatgtaa taaaggaagg
     1861 acacgcagag aaagtgttag cagagctctg actttgatta cacgagcttt gacttcctgt
     1921 cattacaaag gttctaaaaa caaacaagat aagttttttt ttctgatatt taatttggtt
     1981 gttgaatatg ctaacagaat ttacaaagtt ggaaaatctc agaagtccca tatggccaga
     2041 accatcagta cacaggtttt gggggaaaac attactgaaa ccccaaaatg gaatatacag
     2101 agatgagacc ttaaccccat tcctttgcta acatgtcccc tttacctatt ctagcttttt
     2161 gattccctct tccagttgtg aagtttattc atttcttgag aacccagttt taacattgct
     2221 gaactcaatt taagattggc aagggaaaag atgtattagt ggacttggct gaatttacgt
     2281 aatagtcaaa accctactct cttgccgctc agttttccaa tagcctgcgg cagtgaagtt
     2341 aaagatcagg tgacagccaa gcctactgct aggagattca acctgtggcc atgttggttt
     2401 atatctgata gtttgtaagt tttatttatt ttaattttcc tttatatgtg actgatgaag
     2461 tctttctaca tgtcatttgc tttctacaca ttaccataga acacaattgt gtgtgcactt
     2521 aaatttctat gaatacattc atccactcat ttaatattaa agaaaaagta aaatatgatt
     2581 tgaattcagc cattcactgt taacttcatt tgtacaggtg gtggtagcgt agtttgtatc
     2641 ataaggaatg gaattaattt ttttttgttt gaagtaaata ataacctcat ggcttattgt
     2701 cttcataaca aaagtggctt cggactaagt ggatcatttg gccctttctc ttactgccct
     2761 ccagttcaca gtgctcctgt ctcctctcag tcagtgttct ctttgatctg cagtcaggcc
     2821 caccactaag ccttcagcac actcttcttc ataagttgaa ctctctgcag cttctggtat
     2881 catttaggta cagtctgctc accatggcca atacacctcc agtcacggtg cccttgtcct
     2941 gggcacgcac agaatgtctg cccttcttgt acttggtggg gctggtcctt gccaggttat
     3001 ttgaagaaag gctggagaga tttaggaacc ctcaccatgc ctattcgcac agacatgatc
     3061 aggccagatg tgaaactgtc aaacgttctt taaagttacc ttaaataggc ctgcaaacac
     3121 tattgtagca aaaatttcac caaatgattt tttttgtagt tatgccaacc tattagtttg
     3181 gccataattt tatagcattt gtggagtagg gacagatagg acttttgttg aattgttact
     3241 tttctatatc atcctattaa gtagaacatt gcctttgatg ttgtaactca tttccattta
     3301 ttcacttaca aatgtttcca tgtctaagaa gtgtagttta taacactcta caaattgata
     3361 aatatactag cagctttaag aagattgaaa acaatcccaa agaggctgca tccatttaac
     3421 tacaagttca aaagggcagg ctgctttaag tcatgatata gactaatggg tattactaag
     3481 gtaaaatgcc aatttgaaaa ctagtctatc aaatgtgcac ttgtctcttt gtgtagcttg
     3541 aacatggggg gtgaaatggt gctgagggga ggtaccgact cagtgtccac gctcactgtc
     3601 atgtcctcag cattgtggag acaatgactg ggatatttgg gtcatataat ctacacaaga
     3661 aaccctcagt taattctttt gcttcatgaa gctctcccac tggaatttct catttaaaat
     3721 ttatttataa tgatcatggg gaggggcagg aaaatgccag tttagaaaga aaactagctg
     3781 tattttttcc tgaccataaa aaaatatgta cattactgct tgttgttatg tgaactcctc
     3841 atcaataaag ctgcactata aagca
//
