LOCUS       NM_001163764            1616 bp    mRNA    linear   ROD 09-FEB-2025
DEFINITION  Mus musculus transcription factor 19 (Tcf19), transcript variant 2,
            mRNA.
ACCESSION   NM_001163764
VERSION     NM_001163764.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1616)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1616)
  AUTHORS   Loo,L., Simon,J.M., Xing,L., McCoy,E.S., Niehaus,J.K., Guo,J.,
            Anton,E.S. and Zylka,M.J.
  TITLE     Single-cell transcriptomic analysis of mouse neocortical
            development
  JOURNAL   Nat Commun 10 (1), 134 (2019)
   PUBMED   30635555
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1616)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
REFERENCE   5  (bases 1 to 1616)
  AUTHORS   Krautkramer,K.A., Linnemann,A.K., Fontaine,D.A., Whillock,A.L.,
            Harris,T.W., Schleis,G.J., Truchan,N.A., Marty-Santos,L.,
            Lavine,J.A., Cleaver,O., Kimple,M.E. and Davis,D.B.
  TITLE     Tcf19 is a novel islet factor necessary for proliferation and
            survival in the INS-1 beta-cell line
  JOURNAL   Am J Physiol Endocrinol Metab 305 (5), E600-E610 (2013)
   PUBMED   23860123
REFERENCE   6  (bases 1 to 1616)
  AUTHORS   Mugford,J.W., Yu,J., Kobayashi,A. and McMahon,A.P.
  TITLE     High-resolution gene expression analysis of the developing mouse
            kidney defines novel cellular compartments within the nephron
            progenitor population
  JOURNAL   Dev Biol 333 (2), 312-323 (2009)
   PUBMED   19591821
REFERENCE   7  (bases 1 to 1616)
  AUTHORS   Trimarchi,J.M., Stadler,M.B. and Cepko,C.L.
  TITLE     Individual retinal progenitor cells display extensive heterogeneity
            of gene expression
  JOURNAL   PLoS One 3 (2), e1588 (2008)
   PUBMED   18270576
  REMARK    Publication Status: Online-Only
REFERENCE   8  (bases 1 to 1616)
  AUTHORS   Bowen,M.A., Bajorath,J., D'Egidio,M., Whitney,G.S., Palmer,D.,
            Kobarg,J., Starling,G.C., Siadak,A.W. and Aruffo,A.
  TITLE     Characterization of mouse ALCAM (CD166): the CD6-binding domain is
            conserved in different homologs and mediates cross-species binding
  JOURNAL   Eur J Immunol 27 (6), 1469-1478 (1997)
   PUBMED   9209500
REFERENCE   9  (bases 1 to 1616)
  AUTHORS   Kanki,J.P., Chang,S. and Kuwada,J.Y.
  TITLE     The molecular cloning and characterization of potential chick
            DM-GRASP homologs in zebrafish and mouse
  JOURNAL   J Neurobiol 25 (7), 831-845 (1994)
   PUBMED   8089660
REFERENCE   10 (bases 1 to 1616)
  AUTHORS   Ku,D.H., Chang,C.D., Koniecki,J., Cannizzaro,L.A.,
            Boghosian-Sell,L., Alder,H. and Baserga,R.
  TITLE     A new growth-regulated complementary DNA with the sequence of a
            putative trans-activating factor
  JOURNAL   Cell Growth Differ 2 (4), 179-186 (1991)
   PUBMED   1868030
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB873636.1, CX220762.1, AK077414.1, BG082313.2 and AK004231.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. All three variants encode the same protein.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            CDS exon combination :: AK077414.1, AK078697.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN00849374, SAMN00849375 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-37                BB873636.1         2-38
            38-677              CX220762.1         1-640
            678-722             AK077414.1         714-758
            723-769             BG082313.2         361-407
            770-1616            AK004231.1         2-848
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 18.69 cM"
     gene            1..1616
                     /gene="Tcf19"
                     /gene_synonym="5730403J10Rik"
                     /note="transcription factor 19"
                     /db_xref="GeneID:106795"
                     /db_xref="MGI:MGI:103180"
     exon            1..66
                     /gene="Tcf19"
                     /gene_synonym="5730403J10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            67..619
                     /gene="Tcf19"
                     /gene_synonym="5730403J10Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             382..1173
                     /gene="Tcf19"
                     /gene_synonym="5730403J10Rik"
                     /note="TCF-19; SC1 protein homolog"
                     /codon_start=1
                     /product="transcription factor 19-like protein"
                     /protein_id="NP_001157236.1"
                     /db_xref="CCDS:CCDS50089.1"
                     /db_xref="GeneID:106795"
                     /db_xref="MGI:MGI:103180"
                     /translation="MLPCFQLLRIGGGRGGDLYTFHPPSKSGCTYRLGCRADLCDVAL
                     RPQQEPGLISGVHAELHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLL
                     TFGPQGQAGTSSSSEFYFMFQQVRVKPQDFAAITVPRSKGEAGGGFQPMLPPQGAPQR
                     PLSTLSSAPKATLILNSIGSLSKLQAQPLTFSRGGGRPQGLAIPSQHGEAQVSPAPPT
                     RNRRKSAHKVLAELDDEVSPGPLSVLTEPRKRLRVEKAALIASGE"
     exon            620..1166
                     /gene="Tcf19"
                     /gene_synonym="5730403J10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1167..1616
                     /gene="Tcf19"
                     /gene_synonym="5730403J10Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acccaagccc cgccttcggg gcggcttcct tggctgtcaa acctcggcgg gagcgcggga
       61 cgcaggattg tcggaggctc ccggatgttg agccgcctga ggatccggct tcactgaggt
      121 gccacaagac gtcttcctgg ttttgcatcg catcaggact ttactggaat tgctttttaa
      181 acctcatctt gacagcctct gtcttggtgc atatccaggc ctctggcgct ctgaatctgc
      241 actgcttaag ttggcattag gcacaatact tagctgttga catcagagag aactgaattg
      301 aagcccacgg tgcatgaccc aggagtagga gagggaatgg acttctgagg tgggcaaagt
      361 ggtgcagagg gggcaccccc catgctgccc tgtttccagc tgctgcgtat agggggcggc
      421 aggggcggtg acctctacac cttccacccc ccgtccaagt ctggctgcac ctatcgattg
      481 ggctgcaggg ccgacctgtg tgatgtggcc ctgcggcccc agcaggagcc cggcctcatc
      541 tctggagtcc atgcggaatt gcatgctgaa ctccaagggg acgactggag ggtcagcctg
      601 gaggatcaca gcagccaagg gactttggtc aataatgtcc gacttccaag aggccacaga
      661 ctggagttga gtgatggtga ccttctgacc tttggccccc aaggtcaagc aggaaccagc
      721 tcctcctcag agttctactt catgtttcaa caagtccggg ttaaacctca ggactttgca
      781 gccataaccg tccctcggtc taagggagaa gctgggggcg gtttccaacc tatgctgccc
      841 ccccaagggg cacctcagag gccactcagc actctctcct ctgcccccaa ggccacactg
      901 attctcaatt ccatcggcag cctcagcaaa ctccaggccc agcctctcac cttctcccgt
      961 ggtggtggca ggccacaggg cctggctatt ccctctcagc atggggaagc gcaagtttcg
     1021 cctgctccac ccacaagaaa ccggaggaaa tcagctcata aagtgttggc agagctagat
     1081 gatgaggtct ccccaggccc cctgtccgtc ctgacggagc ccaggaagag gctccgggtg
     1141 gagaaagctg ctctgatagc cagtggggaa tgaccacagg gaaaggtcca ttgctaaaga
     1201 ctgactcaag gctggagaat gcttgcaaat gaagtgacag aaaagatggt ttcctgccaa
     1261 agatgttgca gcctccaagt ttccagtgag ctacaagccc agtcacaagg aataaagcct
     1321 tgcctccatg gatgccagga tacctgcagt tagagcaccg gtcccagaaa ccattcctag
     1381 aaggtatggt tttattttgc tgaagccagc atataccagg caagtgctct gccacaatac
     1441 cctaacccta ctcatgttct tgaatggcat cggctaaagc accctgaagg acccagagca
     1501 cattcccaag gcatcctcat gccaccgcta gctagtatca ccaccagctg agtctctggg
     1561 actagctttt cagagcttag tctttattcc caaataaaga ataaactgtt tcatcc
//
