LOCUS       NM_183289               2569 bp    mRNA    linear   ROD 21-AUG-2024
DEFINITION  Mus musculus transcription elongation regulator 1-like (Tcerg1l),
            mRNA.
ACCESSION   NM_183289 XM_916561
VERSION     NM_183289.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2569)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2569)
  AUTHORS   Stogsdill,J.A., Kim,K., Binan,L., Farhi,S.L., Levin,J.Z. and
            Arlotta,P.
  TITLE     Pyramidal neuron subtype diversity governs microglia states in the
            neocortex
  JOURNAL   Nature 608 (7924), 750-756 (2022)
   PUBMED   35948630
REFERENCE   3  (bases 1 to 2569)
  AUTHORS   Matho,K.S., Huilgol,D., Galbavy,W., He,M., Kim,G., An,X., Lu,J.,
            Wu,P., Di Bella,D.J., Shetty,A.S., Palaniswamy,R., Hatfield,J.,
            Raudales,R., Narasimhan,A., Gamache,E., Levine,J.M., Tucciarone,J.,
            Szelenyi,E., Harris,J.A., Mitra,P.P., Osten,P., Arlotta,P. and
            Huang,Z.J.
  TITLE     Genetic dissection of the glutamatergic neuron system in cerebral
            cortex
  JOURNAL   Nature 598 (7879), 182-187 (2021)
   PUBMED   34616069
REFERENCE   4  (bases 1 to 2569)
  AUTHORS   Sinha,N., Whelan,E.C., Tobias,J.W., Avarbock,M., Stefanovski,D. and
            Brinster,R.L.
  TITLE     Roles of Stra8 and Tcerg1l in retinoic acid induced spermatogonial
            differentiation in mousedagger
  JOURNAL   Biol Reprod 105 (2), 503-518 (2021)
   PUBMED   33959758
  REMARK    GeneRIF: Roles of Stra8 and Tcerg1l in retinoic acid induced
            spermatogonial differentiation in mousedagger.
REFERENCE   5  (bases 1 to 2569)
  AUTHORS   Buenaventura,D.F., Corseri,A. and Emerson,M.M.
  TITLE     Identification of Genes With Enriched Expression in Early
            Developing Mouse Cone Photoreceptors
  JOURNAL   Invest Ophthalmol Vis Sci 60 (8), 2787-2799 (2019)
   PUBMED   31260032
REFERENCE   6  (bases 1 to 2569)
  AUTHORS   Li,M.Z., Wang,J.S., Jiang,D.J., Xiang,C.X., Wang,F.Y., Zhang,K.H.,
            Williams,P.R. and Chen,Z.F.
  TITLE     Molecular mapping of developing dorsal horn-enriched genes by
            microarray and dorsal/ventral subtractive screening
  JOURNAL   Dev Biol 292 (2), 555-564 (2006)
   PUBMED   16516881
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK017700.1,
            AC127287.4, BC107234.1, BC048631.1 and AC127598.3.
            
            On or before Mar 13, 2008 this sequence version replaced
            XM_916561.2, NM_183289.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMN00849375, SAMN00849377
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-279               AK017700.1         2-280
            280-280             AC127287.4         158776-158776
            281-385             AK017700.1         281-385
            386-1123            BC107234.1         1-738
            1124-1821           BC048631.1         79-776
            1822-2569           AC127598.3         34934-35681         c
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 82.95 cM"
     gene            1..2569
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /note="transcription elongation regulator 1-like"
                     /db_xref="GeneID:70571"
                     /db_xref="MGI:MGI:1917821"
     exon            1..410
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             78..1850
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /codon_start=1
                     /product="transcription elongation regulator 1-like
                     protein"
                     /protein_id="NP_899112.2"
                     /db_xref="CCDS:CCDS40167.2"
                     /db_xref="GeneID:70571"
                     /db_xref="MGI:MGI:1917821"
                     /translation="MLAGARLQRRRRQLQQPQQPRWRQPLPWPMNADPPPPPWVWMVP
                     GTAGLLRLGAGVAPPPVLLASAQPASAPLLPRLPGWPAPGEPLLPLLPLSSAPDHAAV
                     HHYPLLHGQWLFGGHSPSIGLAPSSAVELVPLFPHVCPSTLSPPVGKNWIDKRMPNYK
                     IFFNNPFALDSTWMYPEESVLFHSHEKTHFLANQVTPSLSRPTPASRPLPTVVLAAQP
                     IPGGCHDSLKPISRGPTITITAATAAAAATAMVSVDPEELRGLSPSIMQPCHFLTLTP
                     IRIPFRTAPFSDKGKEHSRAPRSPALMLRAPERKSLVGDKEDKEPPPILVRGEETAAK
                     GNKPVASTPVPGSPWCVVWTGDDRVFFFNPTMQLSVWEKPVDLQNRGDLKRIIEDPPH
                     KRKLEASATESSDGSSSDDGSEDQSVKTKRNRTESCEGPGPEDTHQVDKGPQTPPPQI
                     LLPLEERVTHFRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNSEERKQIFEQFVKTR
                     IKEEYKERKSKLLLAKEEFKKLLEESKVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEH
                     FFNQFILILKKRDKENRLRLRKMR"
     exon            411..557
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            558..738
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            739..939
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            940..1034
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1035..1123
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1124..1278
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1279..1348
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1349..1484
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1485..1574
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1575..1693
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1694..2569
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2548..2553
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2568
                     /gene="Tcerg1l"
                     /gene_synonym="5730476P14Rik"
                     /note="major polyA site"
ORIGIN      
        1 gctccgaagc ccgcgccgcc gccggcccgc acctcgggcg cccgccgccc ccgccgccgc
       61 ccgcgcgggg gtgtaggatg ctggcgggcg ccaggctcca gcggcggcgg cggcagctac
      121 agcagcccca gcagccccgg tggcggcagc ctctcccgtg gccgatgaat gcagacccac
      181 cgccaccgcc ctgggtttgg atggtccccg gcaccgccgg gctgctccgg cttggcgccg
      241 gggtcgcgcc cccgccggtg ctgttggcct cggcgcagcc tgcctccgcc ccgttgctcc
      301 cgcggctgcc gggctggcca gccccgggag agcccctgct gcccctgctg ccgctgtcct
      361 ctgcgccaga ccacgccgcc gtgcaccatt atcccctgct ccacggacag tggctgtttg
      421 gtggtcattc tccatccata ggactagccc cctcctctgc tgtggagttg gtgccccttt
      481 tcccacatgt ctgtccttct actctgtcac ctcctgttgg gaaaaactgg atagataaga
      541 ggatgcctaa ttacaagatt ttttttaaca acccctttgc tctggactca acctggatgt
      601 acccggagga atcggtactc ttccacagcc atgaaaaaac tcattttctg gcaaaccaag
      661 taactccatc tctgtccagg cccactcctg cctccaggcc tctccccact gtggtattag
      721 cagctcaacc cataccaggt ggttgtcatg acagtcttaa gccaatcagc aggggtccca
      781 ccatcaccat cactgctgcc acagctgctg ctgcagctac tgccatggtc tctgtagacc
      841 ccgaggaact ccggggcctg agcccctcca tcatgcagcc gtgccacttc ctgacattga
      901 cccccatcag aatccccttc cggactgccc cattctcaga taaaggcaaa gagcacagcc
      961 gtgcaccccg ttcccctgcc ctgatgctac gtgccccaga gaggaaaagc ttggtgggag
     1021 acaaggagga taaggagcct ccacccatat tggtaagagg ggaggaaact gcagcgaaag
     1081 gcaataaacc agtggcctcc acgcctgtgc ctggatcccc ctggtgtgtg gtctggacgg
     1141 gtgatgaccg ggttttcttc ttcaacccga ccatgcagct gtcagtctgg gagaagccag
     1201 tggacctaca gaaccgtggg gacctcaaga gaatcatcga ggacccaccc cacaaacgca
     1261 agctggaggc ctcagcaact gaaagcagtg atggttccag ctcagatgat ggcagtgagg
     1321 accaaagtgt gaaaaccaag aggaacagga ctgaaagctg cgagggccct ggaccagaag
     1381 acacccatca agtggacaag ggaccgcaga caccaccccc acagattctc ctgcccctgg
     1441 aagagcgtgt gacccatttc cgagacatgc tgctagagag aggggtgtca gcgttttcta
     1501 cttgggagaa agaattgcat aaaattgtgt ttgacccacg atatctcctg ctaaactctg
     1561 aggaacgaaa acagatattc gagcagtttg tcaagacaag aatcaaagaa gaatacaagg
     1621 aaaggaaaag taaattgctg ctagccaaag aagaattcaa gaaacttcta gaagaatcta
     1681 aagtatcgcc caggaccaca tttaaagagt ttgcagagaa acacggccgt gatcagaggt
     1741 ttcgtcttgt tcagaagcga aaggatcagg agcacttttt caaccagttc atacttatcc
     1801 taaaaaaacg ggacaaggaa aacagactaa ggctccggaa gatgagatga gtccgtgcaa
     1861 acacggtatg acagcaggca gctgagtgtg cgcttggagg aacttaggtg gcagtggccg
     1921 gctgctctgc ccattccagg cagccagggg tgcaggtgtt ctcagagaat tactgtttca
     1981 tattgaagct ccctcttttg tacattgttc cccgtttgat gcatttctaa ttgccatgag
     2041 atgtcgagtc tttaagtgtt ttaattatgc aaattacttg taatatacac aaattacaaa
     2101 cccactgcag gtctgtggca aagcagcagc aggaaatgcg gataatcgtc tcgaggtgtt
     2161 gcctccactc cacaggactg tctagaactt ctagagtttt gtgaatcacc ccccttttgt
     2221 gcaggcctcc cgtggtgttc ctagatcaag gccccttgtt tcctgagtag tagaaatggg
     2281 ttccattatt catcacagtg acaaccggac atttgacacc cttgtgaatc gtgatcactt
     2341 gcaggtgact aagagtgact ggcttctctg aaggtgtatc cccaccagga gaagggagcc
     2401 atgctggctg tcagaggtcc ttcttaagaa gaattatttt gtacaaaatc atcatattac
     2461 tatttgagtt atttttattg tgtgcccaga gtttgcatga gatttttctc atcatctttg
     2521 tataaaaatt ttacattttt tttaaccaat aaatatttta aaccagcat
//
