LOCUS       NM_025617               6243 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus transcription elongation factor A (SII) N-terminal and
            central domain containing 2 (Tceanc2), mRNA.
ACCESSION   NM_025617
VERSION     NM_025617.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6243)
  AUTHORS   Alvarez-Dominguez,J.R., Zhang,X. and Hu,W.
  TITLE     Widespread and dynamic translational control of red blood cell
            development
  JOURNAL   Blood 129 (5), 619-629 (2017)
   PUBMED   27899360
REFERENCE   2  (bases 1 to 6243)
  AUTHORS   Alvarez-Dominguez,J.R., Hu,W., Yuan,B., Shi,J., Park,S.S.,
            Gromatzky,A.A., van Oudenaarden,A. and Lodish,H.F.
  TITLE     Global discovery of erythroid long noncoding RNAs reveals novel
            regulators of red cell maturation
  JOURNAL   Blood 123 (4), 570-581 (2014)
   PUBMED   24200680
REFERENCE   3  (bases 1 to 6243)
  AUTHORS   Ryder,E., Gleeson,D., Sethi,D., Vyas,S., Miklejewska,E., Dalvi,P.,
            Habib,B., Cook,R., Hardy,M., Jhaveri,K., Bottomley,J.,
            Wardle-Jones,H., Bussell,J.N., Houghton,R., Salisbury,J.,
            Skarnes,W.C. and Ramirez-Solis,R.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Molecular characterization of mutant mouse strains generated from
            the EUCOMM/KOMP-CSD ES cell resource
  JOURNAL   Mamm Genome 24 (7-8), 286-294 (2013)
   PUBMED   23912999
REFERENCE   4  (bases 1 to 6243)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL645723.11.
            
            On Mar 8, 2007 this sequence version replaced NM_025617.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK008715.1, BC028321.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-129               AL645723.11        79092-79220         c
            130-269             AL645723.11        78419-78558         c
            270-411             AL645723.11        66402-66543         c
            412-605             AL645723.11        48369-48562         c
            606-6243            AL645723.11        35016-40653         c
FEATURES             Location/Qualifiers
     source          1..6243
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 50.07 cM"
     gene            1..6243
                     /gene="Tceanc2"
                     /gene_synonym="2210010B22Rik; 2210012G02Rik;
                     6330404A07Rik; Tdeanc2"
                     /note="transcription elongation factor A (SII) N-terminal
                     and central domain containing 2"
                     /db_xref="GeneID:66526"
                     /db_xref="MGI:MGI:1913776"
     exon            1..129
                     /gene="Tceanc2"
                     /gene_synonym="2210010B22Rik; 2210012G02Rik;
                     6330404A07Rik; Tdeanc2"
                     /inference="alignment:Splign:2.1.0"
     exon            130..269
                     /gene="Tceanc2"
                     /gene_synonym="2210010B22Rik; 2210012G02Rik;
                     6330404A07Rik; Tdeanc2"
                     /inference="alignment:Splign:2.1.0"
     CDS             171..794
                     /gene="Tceanc2"
                     /gene_synonym="2210010B22Rik; 2210012G02Rik;
                     6330404A07Rik; Tdeanc2"
                     /codon_start=1
                     /product="transcription elongation factor A N-terminal and
                     central domain-containing protein 2"
                     /protein_id="NP_079893.1"
                     /db_xref="CCDS:CCDS18431.1"
                     /db_xref="GeneID:66526"
                     /db_xref="MGI:MGI:1913776"
                     /translation="MDKFVIRTPRIQNSPKKKLGEKVYKQATIESLKRVVVIEDIKRW
                     KTMLELPDQTKENLVAALQELKKKMPSREVLRSTRIGHAVNKMRRHSDPEVAGLAKEV
                     YTEWKTFIEKHLDRPSIEVRSDPKTESFRKNAQKLLSEALELKMDHLLVENIERETFH
                     LCSRLINGPYRRTVRALVFTLKHRAEIREQVKSGALPVGTFVQTHKK"
     exon            270..411
                     /gene="Tceanc2"
                     /gene_synonym="2210010B22Rik; 2210012G02Rik;
                     6330404A07Rik; Tdeanc2"
                     /inference="alignment:Splign:2.1.0"
     exon            412..605
                     /gene="Tceanc2"
                     /gene_synonym="2210010B22Rik; 2210012G02Rik;
                     6330404A07Rik; Tdeanc2"
                     /inference="alignment:Splign:2.1.0"
     exon            606..6243
                     /gene="Tceanc2"
                     /gene_synonym="2210010B22Rik; 2210012G02Rik;
                     6330404A07Rik; Tdeanc2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1566..1571
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tceanc2"
                     /gene_synonym="2210010B22Rik; 2210012G02Rik;
                     6330404A07Rik; Tdeanc2"
                     /note="hexamer: AATAAA"
     polyA_site      1590
                     /gene="Tceanc2"
                     /gene_synonym="2210010B22Rik; 2210012G02Rik;
                     6330404A07Rik; Tdeanc2"
                     /note="major polyA site"
ORIGIN      
        1 gtagttcctg cgggtcacca gcgaggaact gggccccgga agaagtgtac aaatagttac
       61 aacgcgcggc ccgggtggag gtcccgagga gtcaagagac caaacagcgt aggcaggctg
      121 attttcccga atactcctca agcacctgaa ggtaggcgga gcccccagca atggataaat
      181 tcgtcattcg aacgcctagg atccagaata gcccgaagaa gaaactcgga gaaaaggttt
      241 acaagcaagc cacgattgag tcgttgaaga gagttgtggt tatagaagac ataaaaagat
      301 ggaaaactat gttggagctt cctgatcaaa ccaaagaaaa cctagttgct gccttacaag
      361 aattaaagaa gaaaatgccc tcgagggagg tgttgagatc cacaaggata ggtcatgctg
      421 tgaacaagat gcgcaggcac tcggacccag aggtggctgg tcttgccaaa gaagtttaca
      481 ctgagtggaa gactttcatt gaaaaacatt tggacagacc ttctattgaa gtccggagcg
      541 atccaaaaac tgagtcattt agaaaaaatg cccagaaatt actttcagaa gccttggaat
      601 tgaagatgga tcacctactg gttgaaaata ttgagcggga aacgtttcat ctctgctccc
      661 ggctcattaa cgggccctac cggaggacgg tacgcgctct ggtcttcaca ttaaagcacc
      721 gagctgagat ccgggagcag gtgaagagcg gagcgctgcc ggtcggcacg tttgtacaga
      781 cccacaaaaa gtgacccggg gacgggccca gcaccgggcc tcgcgccacc attcaaagcc
      841 tcttttgagt ttgggtgatg cggatgttgg ctgtgctgga tattcccatg gtgccattcc
      901 ttcagacaga acgtggggag ccctgggaga taggcctgtg ggggcggctt cattagctgc
      961 cttgcgctgg cgctgcctga cgggatgaac ggggctgtca ctgggaagtg ccatccagtc
     1021 accatcaccc agcacaatgg aagggtgaca ggtttcactg tgagcttgcc aaggacacct
     1081 ctaaactccc ccatgtcagc agatgaagtt accactttat ttcgccaccc tgcaggtaac
     1141 tgaaactcaa ttaccgctgc tcctcacgcg gttccagccc cctgagttta gacagctccg
     1201 aagcctctca gaactcccgt ctgctctctt tgctctaccc caggggtgag cccactggag
     1261 cctgcgacca gccctgcttg ccaccgctca cttatctgag cctttcagct ctccctggaa
     1321 gaccttcggg gaggggctcc tgagccccca tgctgaggcc tctaatgagg agctggcctg
     1381 aagcctccct gcacctcggg gttcatttga atacagcctc tgttgaagat gcataatgaa
     1441 atttctcttg cagtgactta ctgctgtaag aagaaaaatg catacgtgaa gattttcaat
     1501 gaaatacatc tacatgtgtc tgcttggatg attatgtaaa tggtacttgc tctttaaaaa
     1561 gtaataataa actgagatgt actaaaacaa gaggcatagt ttcccccatg aagcatacta
     1621 cagaactgag catgatggct cctgcctgta atcccagcac tcaggggtct gagacagaag
     1681 gattgctatg cgtttgaggc cactttgggc tatgtagcaa gtaccaaacc agttggagct
     1741 atataacaag actctgtctc caaaaggggg gtgggggcgg ggaggagggg aggaaagagg
     1801 aggttggagc aggaaaaggg aaagagcgtg gacagagtaa atggggtaga aaggaggcag
     1861 ctggtaaagt tcatggtggg atgagaactg gagggaggcc aggttggtgg cacacacctt
     1921 ttatcctagc actttggaag cagaggcaga ccagcctgtt ctacatagtg agttccaaga
     1981 tagccagggc tacatagtaa gatcctgtcc caaaacacac gcaaacacat acacagaacc
     2041 tgaaaaagat agcaaggctg gaggaagact gtaaactggt gtgtggaagc agagagaggg
     2101 agagaatgtg ggaaggaaag ggaaagggat tgtttgcaaa gcaaggatgg aagggtcagg
     2161 gaggatgctg tctgcattgc aagtgttccc tggtctgaga tgagtgatag ggggcttgta
     2221 gttcttcacc cctgctcatt tctcctgcct agctggatct gtccaggagt gttgcttttg
     2281 ctaccccagg gtggggggga gggggagagg gggcaggttg ctggctcgag aagggagggc
     2341 cactgttgct catgcaggga gcagaagctc aaccacatgg ggtcggggag ggcgggcgca
     2401 gggagtgggg accttgtcag ggaccactga gtgggaagtg accacagtgg gcccgggaag
     2461 cttccagcag gaagtgttac agcagctctt gtatgacagc agctctcaga agacccttgg
     2521 agtaattctt acaccgctgt gttatgcctt ctgggtaggg tcttatgtaa tatacatttt
     2581 ggggtggatt aagggtctga cagcagatgc tttctattgg cttggtctga gatgttaggg
     2641 atgcctcatc tgcacgtgga aggacttggg atgctgcacc tacatgacca atcctctcca
     2701 tggggtgtcg tggtcacatg acaggggaac aggtgaagca cttactgtcc tctggtatga
     2761 ggtgccgggc ttccgaatcc acacaacctt atcaaatttc ctggcacggt cggtccattg
     2821 ccccgcagat aaccataagt acagtttctc ttccttacaa atattctgta gcactttaac
     2881 ctggtctagg tctgagaaca tagctcacag gagagcgctt gcctcgctta cacgaggccc
     2941 tgagtttgtt agatccccag tgccgcagaa caaagagcct ttgccttatt tccctgtctt
     3001 cgctgaccac tcttcgcagt tatttcgcat gactgttgtg aggtggtctt gccacgcagc
     3061 ccacacaggc ctgaaacttg agctgcccct gcctcagccc cttaaatgct gggaggcttt
     3121 taagttaaat cttatttgct gctttgtgtc tctactcttt ctccccactt ggagagcttc
     3181 cagttcctgg aagtagtgtt tgagttttcc tcccttctga gtctccagta ccaggaacag
     3241 agcccggtgc cagttaggtg tccatagctg ttgactgtat aattgagcaa cccgcagtga
     3301 gaaaagagga gcgggtctaa ttaaatcagg gatgcttcct ggaggaaggg atacctgcat
     3361 ggttgaggtg cttactcagc agagaaggca aactgtggaa agccgcagaa gtagagggac
     3421 aagtgacagg tctagctgtc cgggagacag catgtcgggc aagtgtgaag tgtgactttc
     3481 atgttcctgt tgtaattgtc ctctctgagg cttactgcct ctgtctgcta atctacacct
     3541 gtcctggaca cttctagcct ctgacaatct aatctaggcc taaaatgttt tcgcttctga
     3601 gacttactgc tgaataagct caccctttct tgttctgaga cttggctggc tgattcaact
     3661 tagctgttcg gggtcaaact cctctccatg ctaactggtt caatctgact tttctcacgg
     3721 cctctcctga attgctctgc ttggcctcat actaacttta gcatctgttc taatcttctg
     3781 gctccttctc attctctgcc tcattctgtc ttctcctgtg tctagcttgt tctttctgca
     3841 acctgtctct gtaaaactct cccagactgt ctcctctctc cctccccctc cctcctccac
     3901 ctctctctct ctgtactgct ctcttaagta gcctcccttt cctctctctt cttatgagag
     3961 ttgggcagat cctattctgt caaacctttc tctgattcat cattttatca ctcaattaga
     4021 tgccactttc aaacatacat gcttccttct acaaactaac tccagccttc attgtttggg
     4081 attaatggtg tgtgctaagg gctgagccac atcacaacta gaaacaggtt tttggttttg
     4141 tttctgtttt ttcagcaaat agcaatctca cagtgtgatc aaatatcctg caacaggcag
     4201 tttctaaagc atttggattg gtcaagttgg tgatacctgg ctctagggag gagacgaggg
     4261 gaaggagaga gggggaagag aaggccttct tcataagcga cccaggagtt ctcctaactt
     4321 aggggtccag agtgagttaa gaacaaattg cttgctaccc aaaagatgtc atcggtgtca
     4381 gctggagggt aagatgtctt ggcgataagg aaagcagctg cgttcttggt ggccgttttc
     4441 tccttgatgc atgaacagaa tttccacggg tgctactgga gctgctgtga gcccatggaa
     4501 aggaggaagc tgcagccagc tctggtctgg ttgcctgccc tcctgctgag aagtacttgc
     4561 aggctccaga tggttagaaa tgaaagggtt gctcctgtaa ggctgggtgt tctctgtcta
     4621 atacatgtgt tcagttgcta gaggaaccat accattagaa tccactccag agcttattga
     4681 tccttttcca gtgcttaaat tgaagtctta agtcctggtc ctttgggtag ggactaagtc
     4741 tccttatttt cattcattca gtcaacaaat aaatgttgtg tgtcttctgt atgccaagga
     4801 ctagagtggc actagggata gtaacgaacg agatagaatt tccacttgag gggctcttag
     4861 tccagggagg accggtaagt aaataattac aatgtggcct gtcgggtgtt tactgtagac
     4921 atttgtttta catgttgagg aggtggggaa gcgagtgaat agctactcag aggaggaaag
     4981 ggtcccagaa ggttcatctc cacagcaagg ctggaagcat ggccaggggt ctcggcagcg
     5041 tgaggaagcc ccgctctgcg cagtggatca ctggatatag tgcagggaca gaggagaggt
     5101 gtgtgcaaaa acatgtctca ggagtcctga atgcgttagc caattggccc tcaggtatag
     5161 gtgaccagag aaggttttaa gggaggcagt caagataaaa tggttcttct ggaaatagat
     5221 aaagagaaac aacctttgaa aaacactcta caatttaggg cctagagagg gggaaaaaaa
     5281 aaaaaaaaaa aaaaaaaacc tcaccaactt cagattcagc aaattgaaga cttttttttt
     5341 tttttttttt tttttgacaa atgaagttta gagttgccca aacagatatc attaggagtt
     5401 ccgggtttga taaataacag aaggcttaga taactcactt accgcattca atggtgatgg
     5461 gacaggcagc tggtcttttt tcatttatag aatatcaggt tcttaaactg ggagctgtca
     5521 accttggttt tcttccctgg ccgcctcagg cctccgagct tcaccctgag ataggcaatg
     5581 tgtttccacc cacgtgggac gagggtccag ttgttaccgc tcattactgc gatcagaaag
     5641 catcagccta tgcagggaaa caaggctggg gagctgccac tggtgcaggg gacacaggga
     5701 acaggggaca caagcttcag aggagagcta gcttgacatg gtgtttcctt ttaaattccc
     5761 cccaaacgat atagttgctg tcaggattat ctataggcta gattggtctc caggtccaac
     5821 aggaccatga tgtccaaagc aatgctgttt tcctatcttg tcagaatcat tcatttggtg
     5881 ctgaattctt atgtgctagg tacagaggtc atgggataaa tacaaccgac tctagcctca
     5941 agttcaccgt ctgataaaga aagatgataa actgatgtcc ttttaaaagt tgtttaaatc
     6001 actcagattt ggagtgtggg tggtgcatgc tgtggtttac gtgtggaggc cagaggacaa
     6061 cttgcaagag tcggttccct ccttctactg tgtaggtacc agtgattaaa caggccgttg
     6121 agctcggagg caactgcctt taccatactc agccgtctct ctggtcctaa acagaccatt
     6181 tcttttaaag gcatttgatt gtgatttatg ggaattcaaa gaaaaggcaa taaaatagcc
     6241 aac
//
