LOCUS       NM_001007577            4063 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus transcription elongation factor A (SII) N-terminal and
            central domain containing (Tceanc), mRNA.
ACCESSION   NM_001007577 XM_142305
VERSION     NM_001007577.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4063)
  AUTHORS   Shalom-Barak,T., Zhang,X., Chu,T., Timothy Schaiff,W., Reddy,J.K.,
            Xu,J., Sadovsky,Y. and Barak,Y.
  TITLE     Placental PPARgamma regulates spatiotemporally diverse genes and a
            unique metabolic network
  JOURNAL   Dev Biol 372 (1), 143-155 (2012)
   PUBMED   22967998
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU611745.1, AK140929.1, AL672174.8 and CO044580.1.
            
            On Apr 25, 2007 this sequence version replaced NM_001007577.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK140929.1, SRR13861889.232924.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-10                BU611745.1         1-10
            11-462              AK140929.1         1-452
            463-463             AL672174.8         105402-105402       c
            464-2938            AK140929.1         454-2928
            2939-2967           AK140929.1         2930-2958
            2968-4022           AK140929.1         2961-4015
            4023-4063           CO044580.1         1-41                c
FEATURES             Location/Qualifiers
     source          1..4063
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 77.59 cM"
     gene            1..4063
                     /gene="Tceanc"
                     /gene_synonym="A630018P17Rik; Gm390"
                     /note="transcription elongation factor A (SII) N-terminal
                     and central domain containing"
                     /db_xref="GeneID:245695"
                     /db_xref="MGI:MGI:2685236"
     exon            1..186
                     /gene="Tceanc"
                     /gene_synonym="A630018P17Rik; Gm390"
                     /inference="alignment:Splign:2.1.0"
     exon            187..287
                     /gene="Tceanc"
                     /gene_synonym="A630018P17Rik; Gm390"
                     /inference="alignment:Splign:2.1.0"
     exon            288..325
                     /gene="Tceanc"
                     /gene_synonym="A630018P17Rik; Gm390"
                     /inference="alignment:Splign:2.1.0"
     exon            326..456
                     /gene="Tceanc"
                     /gene_synonym="A630018P17Rik; Gm390"
                     /inference="alignment:Splign:2.1.0"
     exon            457..4050
                     /gene="Tceanc"
                     /gene_synonym="A630018P17Rik; Gm390"
                     /inference="alignment:Splign:2.1.0"
     CDS             465..1544
                     /gene="Tceanc"
                     /gene_synonym="A630018P17Rik; Gm390"
                     /note="TFS2-M domain-containing protein 1; novel
                     transcription factor S-II (TFIIS), central domain
                     containing protein; TFIIS central domain-containing
                     protein 1"
                     /codon_start=1
                     /product="transcription elongation factor A N-terminal and
                     central domain-containing protein"
                     /protein_id="NP_001007578.2"
                     /db_xref="CCDS:CCDS53249.1"
                     /db_xref="GeneID:245695"
                     /db_xref="MGI:MGI:2685236"
                     /translation="MSDKNQIIARASLIEQLVSKRYFEDIGKQLTELEMIYVSKEHLQ
                     ETDVVRAVYRVLKNCPSVTLKKKAKCLLAKWRGFYKSTHCKPRQSPKVLHTNANKEES
                     AAVSQDVSQDETSGSSHSEIMGLCSSLSRLLPQDAAKPAAAIGSESSTAQMEINEGYL
                     KGDDSECTRKSSGVFQGTLVSVRSKCVELLYTALASSCTDHTEVHIWQNLAREIEEHI
                     FTLHSNNIKKYKTSIRSKVANLKNPRNFHLQQNFLSGTMSAREFAEMSVLDMASQELK
                     QLRASYTESSIQEHCLPQSVDGTWTNKIKCRRCDKYNCKVTVIARGTLFLPSWVQNSN
                     PDEQMTYVICNECGEQWYHNNWVCL"
     regulatory      4026..4031
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tceanc"
                     /gene_synonym="A630018P17Rik; Gm390"
                     /note="hexamer: AATAAA"
     polyA_site      4050
                     /gene="Tceanc"
                     /gene_synonym="A630018P17Rik; Gm390"
                     /note="major polyA site"
ORIGIN      
        1 cggcgcctgc gcttctgggc gggcggtgct gcggccgcta gggcagtgac cgagcatctc
       61 cgatggcggc gttccgccat ttccgttacc tcggcccccg cggaagggct aactcccggg
      121 tccagtggaa ggcaatcccg gctcgcaggg gcgctctggt gctccccgtg cccaggctgc
      181 tcgaagggtc tgacactgaa cctgaagctc accagttcag ctagactgcc tggccagtga
      241 actccaaaga ctgacctgtc tctcccttcc cgttgctgga attacagaaa gtatttgctg
      301 gcctcctgtc ctggaaaaat agctggactt tccaggatac agtgagtgag tacaagcaag
      361 ttgctgtaga gtgacaagaa cctcacaagc taaaagaaga gaaagcattt tggacattgc
      421 gtaacagaag agaatatcta ctaaggtgct tgtcagctgt gaaaatgtct gacaagaacc
      481 aaatcattgc cagggcttcc ttgattgagc aactggtgtc taaaaggtat tttgaggata
      541 ttggtaaaca gcttactgag ctagaaatga tttatgtgtc taaggagcat ctgcaggaga
      601 cagatgtagt cagagctgtt tacagagtcc tcaaaaactg cccatcagtg actttaaaga
      661 agaaggccaa gtgtctgctg gccaagtgga gaggtttcta taagagtaca cactgcaaac
      721 caaggcaaag ccctaaagta ctccacacaa atgctaataa agaagaaagt gcagcagttt
      781 ctcaggatgt aagccaggat gaaacctcag gctctagcca tagtgagatc atgggtctct
      841 gcagttctct ctctaggctg ttaccccaag atgctgcaaa gcctgctgca gcaattggat
      901 ctgaaagtag cactgctcaa atggaaatta atgaaggata tttgaagggt gatgactctg
      961 aatgcactcg caagagctca ggtgtgtttc aaggtacttt agtgtctgtg agatctaagt
     1021 gcgtagaact tctttacaca gcattagcta gttcttgcac agatcacaca gaagtgcaca
     1081 tatggcagaa cttagcaaga gaaattgaag agcacatttt tacccttcat tcaaacaata
     1141 tcaaaaaata taaaactagt attcgaagca aagttgccaa tttgaaaaac cccagaaatt
     1201 ttcatttaca acaaaacttc ctctctggaa ccatgtctgc aagggagttt gctgaaatga
     1261 gtgtcttgga catggcaagc caggaactca agcaactgag agcttcctac acagaatcca
     1321 gcattcaaga acattgcctt ccccaatcag ttgatggcac atggacaaat aaaattaagt
     1381 gtaggcgctg tgataaatac aactgcaagg tcactgtgat tgccagagga acacttttcc
     1441 ttccaagttg ggtgcagaat tcaaacccag atgaacaaat gacctatgtc atttgtaatg
     1501 aatgtgggga gcagtggtac cataacaact gggtatgctt gtgatttgta aataatcctt
     1561 ttaagggcat atgttttata tgtataacct aaccttttgt gcttggtttt tggttgttgt
     1621 tgttttgttt ttagtttgtt ttttttttct tttctttttt tgttttcctt cgagacaggg
     1681 tttctctgtt tagccctggc tgtcctggag accaggctgg cctcgaactg agaaatccac
     1741 ctgcttctgc ctcccaagtg ctgggactaa aggtgtccgc caccactgcc cggcttgtgc
     1801 tctttttttt tttttttaac aaaatcttaa tcttattttt gcctttgggt tttagttcat
     1861 gaaagatgtc attatatagc caaaggtggc ccagtctcat gagtgcttgc attataggcg
     1921 cacctggctt tatatactgc tcttactaca accctaagac taaggaaaga gagttatttg
     1981 ccagagtgta ggccatagaa agctatcaca ctactttgtg gccacttagt gctttactca
     2041 gagtggcact gtagctccac actacctgag agcatgttag agatgaaact cttgctcctt
     2101 aagtcctgat ctgcatttta acagagtccc caggttatcc tctggggtat tttgagaatc
     2161 actgacatac atagcattag gcctgaagtt ctcaggaatg actatatatt agaattttct
     2221 ggagaacatt gaaatgtact ggtgccaagg gccaagccta tacagttcaa tatgaaccta
     2281 tggcctggac ccagtaatca acactgctct ggtcatttct tggttcctgt taagttgcag
     2341 ttagagttag gaactacctg tagatagtct ctcatttgag cctttctata gttctgaaga
     2401 aattaatgtt attctggagt ttacagatga ggaaagcagc ccacttgccc aggttacaca
     2461 actgtatgta gtcggcttca cactgatccc aggttttcca gcttacttct caagcaggtg
     2521 tgatggcaca tgcctgtggt ccaaatacta gggagaatga ggcaggggat ttatgtgagt
     2581 tccggccagt ttgacttgca aagttcctgt ctcaaaactg ttaaaaggga atcctgtttc
     2641 aagcctgtaa tcatagcgtt gggaatgcta aggcagaatc ccatagttga gggcagcctg
     2701 agttagatag agaaacactg ccaaactcaa aaatattcag tctgaggatg acttaatatt
     2761 gactttgtaa gaagtatact cttggaaata ggtgctaagc aaatagtgtt tgggacctct
     2821 aagcttatgt gaccggagtt ttactctttt gtccttaatt ttctcatttt cttttgactg
     2881 gtgaaaagtt gcagtgtaag ttagaatttg gctcgaagcc tgcttcctta gttgaatgcc
     2941 ctgtgttttg tttttttttt tttttttgag cacttcaaaa agtatgatat atagttcctt
     3001 aatgttagga ctctatatac cttcagaggc atgtgtgttg ggattgaaat tcaaattctg
     3061 atcatgtgaa aatggcacta gttgttagag gaagtctctc cttcaatctc agcatttact
     3121 tacatactaa ctgaagagaa aatcacgtct cctagttctt tgtaaacagt gtttactgat
     3181 ttgtatgctt attcacaagc ctttttatgt gaccatgact aatttttttc cttaaaaata
     3241 ataaaatgat tgtctttctg ggttttgatt tttttttacc atgtaaaaca attttataca
     3301 taatcaacac aaaaccttgc atatatgtgc tccttttaca gttaatcagg tgattagata
     3361 tacattttct cttttgttgt ttgacaacaa tatgtgaaga gtttctattt ttataagact
     3421 agcttcactc tgttgcctaa gctgggttca aactcacact ggctggcctt aacctccaga
     3481 gtgctatgat tggcagtgta agccaccatt cattgatttt atcatattaa agagttttta
     3541 tcttagttcc atatgaactc atattttaac tagttattat cccctaactc cccagtattc
     3601 cttcattggg atctgtaggc ttttctttat atttttacct ccgtatgaca gttccccaat
     3661 agttgcataa aactagcaaa catttctgtt ttaggttttt tgaagaaatc aacttgaagc
     3721 tgtcaagtct gagttatatt ttgttatatt ttctccatat ggcattccag ggtggttcac
     3781 catggtgcaa tgtgttagtc ctttacagag tgacttacag agtcatcaac aactcaaagc
     3841 tttcccaaaa tgtggtttca tgtgacttgg aatgatctta aaacctagac agtggttgtg
     3901 caagagcagc acacacagcc tataaaaacc ttgtttcatt tgtctaaatc agtttgatgt
     3961 ttggattttc tatgtaacta tgtattgttt tttatattgc gattttgtaa gctacattta
     4021 ccaaaaataa aagtatttga aatgtaaaaa aaaaaaaaaa aaa
//
