LOCUS       NM_177919               1068 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus transcription elongation factor A (SII)-like 5
            (Tceal5), transcript variant 1, mRNA.
ACCESSION   NM_177919 XM_284745
VERSION     NM_177919.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1068)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1068)
  AUTHORS   Sawada,A., Yamamoto,T. and Sato,T.
  TITLE     Tceal5 and Tceal7 Function in C2C12 Myogenic Differentiation via
            Exosomes in Fetal Bovine Serum
  JOURNAL   Int J Mol Sci 23 (4), 2036 (2022)
   PUBMED   35216152
  REMARK    GeneRIF: Tceal5 and Tceal7 Function in C2C12 Myogenic
            Differentiation via Exosomes in Fetal Bovine Serum.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1068)
  AUTHORS   Navas-Perez,E., Vicente-Garcia,C., Mirra,S., Burguera,D.,
            Fernandez-Castillo,N., Ferran,J.L., Lopez-Mayorga,M.,
            Alaiz-Noya,M., Suarez-Pereira,I., Anton-Galindo,E., Ulloa,F.,
            Herrera-Ubeda,C., Cusco,P., Falcon-Moya,R., Rodriguez-Moreno,A.,
            D'Aniello,S., Cormand,B., Marfany,G., Soriano,E., Carrion,A.M.,
            Carvajal,J.J. and Garcia-Fernandez,J.
  TITLE     Characterization of an eutherian gene cluster generated after
            transposon domestication identifies Bex3 as relevant for advanced
            neurological functions
  JOURNAL   Genome Biol 21 (1), 267 (2020)
   PUBMED   33100228
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1068)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1068)
  AUTHORS   Gergics,P., Christian,H.C., Choo,M.S., Ajmal,A. and Camper,S.A.
  TITLE     Gene Expression in Mouse Thyrotrope Adenoma: Transcription
            Elongation Factor Stimulates Proliferation
  JOURNAL   Endocrinology 157 (9), 3631-3646 (2016)
   PUBMED   27580811
  REMARK    GeneRIF: sufficient to increase the growth rate of pituitary
            progenitors, suggesting a role as a proto-oncogene
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY245586.1, AK032140.1 and BE991033.1.
            
            On Jul 28, 2018 this sequence version replaced NM_177919.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.4869209.1,
                                           SRR7345562.3471595.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849378, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-33                BY245586.1         1-33
            34-998              AK032140.1         3-967
            999-1068            BE991033.1         1-70                c
FEATURES             Location/Qualifiers
     source          1..1068
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 57.4 cM"
     gene            1..1068
                     /gene="Tceal5"
                     /gene_synonym="6430401A05Rik"
                     /note="transcription elongation factor A (SII)-like 5"
                     /db_xref="GeneID:331532"
                     /db_xref="MGI:MGI:3036236"
     exon            1..118
                     /gene="Tceal5"
                     /gene_synonym="6430401A05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            119..186
                     /gene="Tceal5"
                     /gene_synonym="6430401A05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            187..1052
                     /gene="Tceal5"
                     /gene_synonym="6430401A05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             213..815
                     /gene="Tceal5"
                     /gene_synonym="6430401A05Rik"
                     /note="TCEA-like protein 5; transcription elongation
                     factor S-II protein-like 5"
                     /codon_start=1
                     /product="transcription elongation factor A protein-like
                     5"
                     /protein_id="NP_808587.1"
                     /db_xref="CCDS:CCDS30416.1"
                     /db_xref="GeneID:331532"
                     /db_xref="MGI:MGI:3036236"
                     /translation="MEKFYKENEGKPENKGRAEDEGSTEEGGKADEDKSDAEGKPARQ
                     GKLEVEGGPGEQAQQKGEGKPEKQGKSDGEGKRQGESKPDSQAKSASEARAAEKRPAE
                     DYVPRKAKRKTDRGTDDSPKNSQEDLQDRHVSSEEMMRECADMTRAQEELRKRQKMGG
                     FHWVPRDAQDALVPRGQRGVRGVRGGGGRGQKDLEDAPFV"
     regulatory      1025..1030
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tceal5"
                     /gene_synonym="6430401A05Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1052
                     /gene="Tceal5"
                     /gene_synonym="6430401A05Rik"
                     /note="major polyA site"
ORIGIN      
        1 agacgtatgc agaagtctct ctcttccagg taccagctac cagctcctta tctccgtgga
       61 ggaaggcaga cttgaaactg aacgacagag ggggggcaac tgccctatag cccggcaggt
      121 cttcaagtct gtggctgtgg gcagcaaccc agccaaggaa acagaagacc tgcagcatca
      181 gtgcaggaca ggcaacaaag actaattgca ccatggaaaa gttctacaaa gaaaatgaag
      241 gaaagccaga aaacaaggga agggcagaag acgaaggaag tacagaagag ggaggaaaag
      301 cagatgaaga caagtcagat gcagagggga agccagcacg ccagggcaag ctagaggtgg
      361 agggagggcc aggtgagcag gcacagcaga aaggtgaggg gaagcccgag aagcagggaa
      421 agtctgacgg ggagggcaag cgccaagggg agagcaagcc cgattcccag gcaaagtcag
      481 ccagcgaggc gcgggctgca gaaaagcgcc ctgctgaaga ttatgtgccc cggaaagcaa
      541 aacgaaaaac agataggggg acagatgatt ctcccaagaa ctcccaggag gacttacagg
      601 acaggcatgt aagcagcgag gagatgatga gagagtgcgc agatatgact agggctcagg
      661 aagagctgag gaagaggcag aaaatgggtg gttttcactg ggtgccaaga gatgcacagg
      721 atgctttagt ccccaggggc cagcggggag tcaggggggt gaggggcggc ggaggcaggg
      781 gccagaagga cttagaagat gctccatttg tttaatgcct tcagcctttc cttctggatt
      841 ctctgatggg aaatattacc agccctgctt tccctggcag gcttttgcca ggctttgtgc
      901 tttaaccttg tgccgagatt ttcctttagg tgtcactcct gttaccagca gacagcacta
      961 tgtcttttag taaaggactt tcacccatgt gcatggaaga gatgttcatg gtatactgta
     1021 aaataataaa gataacagtt tgcagaacca caaaaaaaaa aaaaaaaa
//
