LOCUS       NM_001359278            1002 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus transcription elongation factor A (SII)-like 3
            (Tceal3), transcript variant 3, mRNA.
ACCESSION   NM_001359278 XM_006528587
VERSION     NM_001359278.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1002)
  AUTHORS   Lukomska,A., Kim,J., Rheaume,B.A., Xing,J., Hoyt,A., Lecky,E.,
            Steidl,T. and Trakhtenberg,E.F.
  TITLE     Developmentally upregulated transcriptional elongation factor a
            like 3 suppresses axon regeneration after optic nerve injury
  JOURNAL   Neurosci Lett 765, 136260 (2021)
   PUBMED   34560191
  REMARK    GeneRIF: Developmentally upregulated transcriptional elongation
            factor a like 3 suppresses axon regeneration after optic nerve
            injury.
REFERENCE   3  (bases 1 to 1002)
  AUTHORS   Navas-Perez,E., Vicente-Garcia,C., Mirra,S., Burguera,D.,
            Fernandez-Castillo,N., Ferran,J.L., Lopez-Mayorga,M.,
            Alaiz-Noya,M., Suarez-Pereira,I., Anton-Galindo,E., Ulloa,F.,
            Herrera-Ubeda,C., Cusco,P., Falcon-Moya,R., Rodriguez-Moreno,A.,
            D'Aniello,S., Cormand,B., Marfany,G., Soriano,E., Carrion,A.M.,
            Carvajal,J.J. and Garcia-Fernandez,J.
  TITLE     Characterization of an eutherian gene cluster generated after
            transposon domestication identifies Bex3 as relevant for advanced
            neurological functions
  JOURNAL   Genome Biol 21 (1), 267 (2020)
   PUBMED   33100228
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1002)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL671887.18 and CB522987.1.
            
            On Dec 30, 2017 this sequence version replaced XM_006528587.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DN174374.1, SRR7345562.5009472.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-54                AL671887.18        21420-21473
            55-121              AL671887.18        21933-21999
            122-988             AL671887.18        22320-23186
            989-1002            CB522987.1         408-421
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 59.1 cM"
     gene            1..1002
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /note="transcription elongation factor A (SII)-like 3"
                     /db_xref="GeneID:594844"
                     /db_xref="MGI:MGI:1913354"
     exon            1..54
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            55..121
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            122..989
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             148..750
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /note="TCEA-like protein 3; transcription elongation
                     factor S-II protein-like 3"
                     /codon_start=1
                     /product="transcription elongation factor A protein-like
                     3"
                     /protein_id="NP_001346207.1"
                     /db_xref="CCDS:CCDS30420.1"
                     /db_xref="GeneID:594844"
                     /db_xref="MGI:MGI:1913354"
                     /translation="MEEVRGENEGKLEKEGKPEDEVEPEDEEKSDEDEKPDKKAKPAP
                     RQGKPEEEAKPDEQGQDEGKPEKQGKSDGEGKRQGESKPDSQAKSASEARAAEKRPAE
                     DYVPRKAKRKTDRGTDDSPKNSQEDLQDRHVSSEEMMRECADMTRAQEELRKRQKMGG
                     FHWVPRDAQDALVPRGPRGVRGVRGGGGRSQRGLHDIPYL"
     regulatory      966..971
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /note="hexamer: AATAAA"
     polyA_site      973
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /note="major polyA site"
     polyA_site      988
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggcagctaga accagcagca gcgggagggg agcggggaga gatccaggag attggtctct
       61 gctgttccca gcgcattgtg acatctgcaa aagagggtcg acctgcccag gatccctgca
      121 ggacaggaaa aggagggaaa tcttgacatg gaagaagttc gcggtgaaaa cgaaggcaag
      181 ctggaaaagg agggaaagcc agaagatgaa gtagagcctg aagatgaaga aaagtcagac
      241 gaggacgaga agccagacaa gaaagcaaag ccagcaccac gccagggcaa gccagaggag
      301 gaggcaaagc cagatgagca agggcaagat gaggggaagc ccgagaagca gggaaagtct
      361 gacggggagg gcaagcgcca aggggagagc aagcccgatt cccaggcaaa gtcagccagc
      421 gaggcgcggg ctgcagaaaa gcgccctgct gaagattatg tgccccggaa agcaaaacga
      481 aaaacagata gggggacaga tgattctccc aagaactccc aggaggactt acaggacagg
      541 catgtaagca gtgaggagat gatgagagag tgcgcagata tgactagggc tcaggaagag
      601 ctgaggaaga ggcagaaaat gggtggtttt cactgggtgc caagagatgc acaggatgct
      661 ttagtcccca ggggccctcg gggagtcagg ggggtgaggg gcggcggagg caggagccag
      721 aggggcctac atgacatccc atacctttaa tgcctttggc cttcaattct gacctctctg
      781 aggagaaaga acactgctgg ccccgctttc cctggtagat acttgccagg cctgtgcttt
      841 aaccttcagc caagactctg cttcaggtgt cactgtcctt accagcagcc ttctgaccca
      901 actccagtgc tctctgtctt ttagtacagg attttcaccc atgtgcatgt acattgtaaa
      961 ataacaataa aaagtttgca gaactacata aaaaaaaaaa aa
//
