LOCUS       NM_001029978            1129 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus transcription elongation factor A (SII)-like 3
            (Tceal3), transcript variant 1, mRNA.
ACCESSION   NM_001029978 XM_282884
VERSION     NM_001029978.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1129)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1129)
  AUTHORS   Lukomska,A., Kim,J., Rheaume,B.A., Xing,J., Hoyt,A., Lecky,E.,
            Steidl,T. and Trakhtenberg,E.F.
  TITLE     Developmentally upregulated transcriptional elongation factor a
            like 3 suppresses axon regeneration after optic nerve injury
  JOURNAL   Neurosci Lett 765, 136260 (2021)
   PUBMED   34560191
  REMARK    GeneRIF: Developmentally upregulated transcriptional elongation
            factor a like 3 suppresses axon regeneration after optic nerve
            injury.
REFERENCE   3  (bases 1 to 1129)
  AUTHORS   Navas-Perez,E., Vicente-Garcia,C., Mirra,S., Burguera,D.,
            Fernandez-Castillo,N., Ferran,J.L., Lopez-Mayorga,M.,
            Alaiz-Noya,M., Suarez-Pereira,I., Anton-Galindo,E., Ulloa,F.,
            Herrera-Ubeda,C., Cusco,P., Falcon-Moya,R., Rodriguez-Moreno,A.,
            D'Aniello,S., Cormand,B., Marfany,G., Soriano,E., Carrion,A.M.,
            Carvajal,J.J. and Garcia-Fernandez,J.
  TITLE     Characterization of an eutherian gene cluster generated after
            transposon domestication identifies Bex3 as relevant for advanced
            neurological functions
  JOURNAL   Genome Biol 21 (1), 267 (2020)
   PUBMED   33100228
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1129)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY124512.1, AK017585.1 and CB522987.1.
            
            On Dec 30, 2017 this sequence version replaced NM_001029978.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC027131.1, AK017585.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-85                BY124512.1         2-86
            86-1112             AK017585.1         2-1028
            1113-1129           CB522987.1         405-421
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 59.1 cM"
     gene            1..1129
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /note="transcription elongation factor A (SII)-like 3"
                     /db_xref="GeneID:594844"
                     /db_xref="MGI:MGI:1913354"
     exon            1..181
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            182..248
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            249..1116
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             275..877
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /note="TCEA-like protein 3; transcription elongation
                     factor S-II protein-like 3"
                     /codon_start=1
                     /product="transcription elongation factor A protein-like
                     3"
                     /protein_id="NP_001025149.2"
                     /db_xref="CCDS:CCDS30420.1"
                     /db_xref="GeneID:594844"
                     /db_xref="MGI:MGI:1913354"
                     /translation="MEEVRGENEGKLEKEGKPEDEVEPEDEEKSDEDEKPDKKAKPAP
                     RQGKPEEEAKPDEQGQDEGKPEKQGKSDGEGKRQGESKPDSQAKSASEARAAEKRPAE
                     DYVPRKAKRKTDRGTDDSPKNSQEDLQDRHVSSEEMMRECADMTRAQEELRKRQKMGG
                     FHWVPRDAQDALVPRGPRGVRGVRGGGGRSQRGLHDIPYL"
     regulatory      1093..1098
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1100
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /note="major polyA site"
     polyA_site      1115
                     /gene="Tceal3"
                     /gene_synonym="1100001D19Rik"
                     /note="major polyA site"
ORIGIN      
        1 gttcacgtga ccggccaggc gcagacgtgg gcaccagccc ccacgtccgc ttgcccgccc
       61 tacggtctgg tcttggcacc cgcgcagaac cagctccctg agctgcccta agcagcagga
      121 cgagctgtga gtgggcttct gcaagccgga gaaggcaaag gcctgtcctg ggtatcctta
      181 ggtctctgct gttcccagcg cattgtgaca tctgcaaaag agggtcgacc tgcccaggat
      241 ccctgcagga caggaaaagg agggaaatct tgacatggaa gaagttcgcg gtgaaaacga
      301 aggcaagctg gaaaaggagg gaaagccaga agatgaagta gagcctgaag atgaagaaaa
      361 gtcagacgag gacgagaagc cagacaagaa agcaaagcca gcaccacgcc agggcaagcc
      421 agaggaggag gcaaagccag atgagcaagg gcaagatgag gggaagcccg agaagcaggg
      481 aaagtctgac ggggagggca agcgccaagg ggagagcaag cccgattccc aggcaaagtc
      541 agccagcgag gcgcgggctg cagaaaagcg ccctgctgaa gattatgtgc cccggaaagc
      601 aaaacgaaaa acagataggg ggacagatga ttctcccaag aactcccagg aggacttaca
      661 ggacaggcat gtaagcagtg aggagatgat gagagagtgc gcagatatga ctagggctca
      721 ggaagagctg aggaagaggc agaaaatggg tggttttcac tgggtgccaa gagatgcaca
      781 ggatgcttta gtccccaggg gccctcgggg agtcaggggg gtgaggggcg gcggaggcag
      841 gagccagagg ggcctacatg acatcccata cctttaatgc ctttggcctt caattctgac
      901 ctctctgagg agaaagaaca ctgctggccc cgctttccct ggtagatact tgccaggcct
      961 gtgctttaac cttcagccaa gactctgctt caggtgtcac tgtccttacc agcagccttc
     1021 tgacccaact ccagtgctct ctgtctttta gtacaggatt ttcacccatg tgcatgtaca
     1081 ttgtaaaata acaataaaaa gtttgcagaa ctacataaaa aaaaaaaaa
//
