LOCUS       NM_001379686            2848 bp    mRNA    linear   ROD 14-AUG-2022
DEFINITION  Mus musculus testicular cell adhesion molecule 1 (Tcam1),
            transcript variant 2, mRNA.
ACCESSION   NM_001379686
VERSION     NM_001379686.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2848)
  AUTHORS   Kurihara M, Otsuka K, Matsubara S, Shiraishi A, Satake H and Kimura
            AP.
  TITLE     A Testis-Specific Long Non-Coding RNA, lncRNA-Tcam1, Regulates
            Immune-Related Genes in Mouse Male Germ Cells
  JOURNAL   Front Endocrinol (Lausanne) 8, 299 (2017)
   PUBMED   29163367
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2848)
  AUTHORS   Kurihara M, Shiraishi A, Satake H and Kimura AP.
  TITLE     A conserved noncoding sequence can function as a
            spermatocyte-specific enhancer and a bidirectional promoter for a
            ubiquitously expressed gene and a testis-specific long noncoding
            RNA
  JOURNAL   J Mol Biol 426 (17), 3069-3093 (2014)
   PUBMED   25020229
  REMARK    GeneRIF: A conserved noncoding sequence (CNS1) located upstream of
            TCAM1 is a novel enhancer for Tcam1 gene expression.
            Erratum:[J Mol Biol. 2015 May 22;427(10):1993-4]
REFERENCE   3  (bases 1 to 2848)
  AUTHORS   Thompson CL, Ng L, Menon V, Martinez S, Lee CK, Glattfelder K,
            Sunkin SM, Henry A, Lau C, Dang C, Garcia-Lopez R, Martinez-Ferre
            A, Pombero A, Rubenstein JLR, Wakeman WB, Hohmann J, Dee N, Sodt
            AJ, Young R, Smith K, Nguyen TN, Kidney J, Kuan L, Jeromin A,
            Kaykas A, Miller J, Page D, Orta G, Bernard A, Riley Z, Smith S,
            Wohnoutka P, Hawrylycz MJ, Puelles L and Jones AR.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   4  (bases 1 to 2848)
  AUTHORS   Nalam RL, Lin YN and Matzuk MM.
  TITLE     Testicular cell adhesion molecule 1 (TCAM1) is not essential for
            fertility
  JOURNAL   Mol Cell Endocrinol 315 (1-2), 246-253 (2010)
   PUBMED   19766163
  REMARK    GeneRIF: Data show that TCAM1 is not essential for male fertility
            or germ cell function in Mus musculus.
REFERENCE   5  (bases 1 to 2848)
  AUTHORS   Sakatani S, Takahashi R, Okuda Y, Aizawa A, Otsuka A, Komatsu A and
            Ono M.
  TITLE     Structure, expression, and conserved physical linkage of mouse
            testicular cell adhesion molecule-1 (TCAM-1) gene
  JOURNAL   Genome 43 (6), 957-962 (2000)
   PUBMED   11195349
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL604045.7.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422601.1682551.1,
                                           SRR13422603.307357.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-72                AL604045.7         58771-58842
            73-148              AL604045.7         63952-64027
            149-415             AL604045.7         64836-65102
            416-736             AL604045.7         66092-66412
            737-1015            AL604045.7         66605-66883
            1016-1285           AL604045.7         67421-67690
            1286-1528           AL604045.7         68425-68667
            1529-2848           AL604045.7         68867-70186
FEATURES             Location/Qualifiers
     source          1..2848
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 68.89 cM"
     gene            1..2848
                     /gene="Tcam1"
                     /gene_synonym="4930570F09Rik"
                     /note="testicular cell adhesion molecule 1"
                     /db_xref="GeneID:75870"
                     /db_xref="MGI:MGI:1923120"
     exon            1..72
                     /gene="Tcam1"
                     /gene_synonym="4930570F09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            73..148
                     /gene="Tcam1"
                     /gene_synonym="4930570F09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             94..1740
                     /gene="Tcam1"
                     /gene_synonym="4930570F09Rik"
                     /codon_start=1
                     /product="testicular cell adhesion molecule 1 precursor"
                     /protein_id="NP_001366615.1"
                     /db_xref="GeneID:75870"
                     /db_xref="MGI:MGI:1923120"
                     /translation="MKMLLLGVWTLLALIPCPGAAEELFQVSVHPNEALVEFGHSLTV
                     NCSTTCPDPGPSGIETFLKKTQLSKGSQWKEFLLEDITEDLVLQCFFSCAGEQKDTVL
                     AITMYQPPEQVILDLQPEWVAVDEAFTVTCHVPSVAPLQSLTLTLLQGDQELHRKDFL
                     SLSLVSQRAEVTATVRAHRDNDRRNFSCRAELDLSPHGGGLFHGSSATKQLRIFEFSQ
                     NPQIWVPSLLEVGKAEIVSCEVTRVFPAQEAVFRMFLEDQELSPFSSWREDAAWASAT
                     IQAMETGDQELTCLVSLGPVEQKTRKPVYVYSFPPPILEIEDAYPLAGTDVNVTCSGH
                     VLTSPSPTLRLQGSLNHSAPGKPAWLLFTAREEDDGRTLSCEASLEVQGQRLVRTTES
                     QLHVLYKPRFQESRCPGNQIWVEGMHQMLACIPEGNPTPVLVCVWNGMIFDLDVPQKA
                     TQNHTGTYCCTATNPLGSVSKDITIIVQGLPEGISSSTIFIIIIFTLGMAVITVALYL
                     NYQPCKGNSRKRMHRPREQSKGEESQFSDIRAEECHAHLC"
     exon            149..415
                     /gene="Tcam1"
                     /gene_synonym="4930570F09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            416..736
                     /gene="Tcam1"
                     /gene_synonym="4930570F09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            737..1015
                     /gene="Tcam1"
                     /gene_synonym="4930570F09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1016..1285
                     /gene="Tcam1"
                     /gene_synonym="4930570F09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1286..1528
                     /gene="Tcam1"
                     /gene_synonym="4930570F09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1529..2848
                     /gene="Tcam1"
                     /gene_synonym="4930570F09Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtctgaggt ccccaagcat cgaggaaggt tcggcagtga ggcaagaggg gcaagacgac
       61 cgctttgact cacttttgga ctttctccca agaatgaaaa tgcttctgtt gggtgtctgg
      121 acactgctgg ccttgatccc ttgtccaggg gccgccgagg agctgtttca ggtatctgtc
      181 catccaaatg aggccctggt agagtttgga cactccctaa ctgtcaactg cagtaccacc
      241 tgcccagacc ctgggcccag tggaatcgag accttcttaa agaaaaccca gctaagcaaa
      301 gggtcccagt ggaaggagtt tctcctggag gacatcacag aggacttggt gctgcagtgc
      361 ttcttctctt gtgcagggga gcagaaggac accgtgctcg ctatcaccat gtaccagcca
      421 ccagagcagg tgatactgga cctgcagcct gaatgggtgg ccgtggatga agccttcaca
      481 gtcacgtgtc atgtacctag tgtggcaccc ctgcagagcc tcacccttac cctcctccag
      541 ggtgaccaag aactgcacag aaaagacttc ctaagtttat ctttggtatc ccaaagagcc
      601 gaggtcaccg ccactgtcag agcccaccgg gacaatgaca ggcgtaattt ctcctgccga
      661 gcagaactgg atctgagccc acatggtggg gggttgtttc acggcagctc agccaccaag
      721 caactccgga tctttgaatt ctctcagaat ccccagatct gggtgccttc actcctggag
      781 gttgggaagg cagagattgt gagctgtgag gtgaccagag tatttccagc ccaggaagct
      841 gtcttccgaa tgttcctgga agaccaggag ctgagccctt tctcgtcctg gagggaagat
      901 gcagcgtggg ccagtgccac cattcaggcc atggagactg gtgaccagga actgacttgc
      961 cttgtgtctc tgggtcccgt ggagcagaaa acaaggaaac cagtttatgt ctacagtttc
     1021 cctccaccaa tcctggagat agaagatgct taccctctgg cagggacgga cgttaatgtg
     1081 acctgctcag gtcacgtgtt aacatcacct agccctactc ttcggcttca gggatcccta
     1141 aaccactctg cccctgggaa gcctgcctgg cttctgttta ctgccaggga ggaagatgat
     1201 ggccggactc tgtcctgcga ggcctctttg gaggtacagg gccagcgact ggtcaggacc
     1261 acagagagcc agcttcatgt cttatacaag ccaaggtttc aggaatcccg ctgccctggc
     1321 aaccagatat gggtagaagg gatgcatcag atgcttgcct gcatcccaga gggaaatcca
     1381 actccggttt tggtgtgtgt ctggaatggg atgatctttg accttgatgt acctcagaag
     1441 gccacccaga accacacggg gacctactgc tgcacagcca ccaacccact aggctccgtc
     1501 agcaaagaca tcactatcat tgtccaaggc ctgcctgagg gcatcagctc ctccaccatc
     1561 ttcattatca tcattttcac cctgggcatg gctgtgatca ctgtagcatt atacctgaac
     1621 taccagccct gcaaaggaaa cagtaggaaa cggatgcaca ggccgcggga gcaaagcaag
     1681 ggcgaggaga gtcagttctc tgacattcgg gcggaggaat gccacgcgca tctctgctga
     1741 ccacaaacaa actctttgct ggagtgtgac ttcagctacc agcatttaca gggacgcaag
     1801 agcgggccaa ggaggaaggc ggagacaatg tgaggcttca cttccttgca ttccgttgtc
     1861 ccccaaagca gggtttcacg ggcccctgtg gctggcagcc agtccgtctg gagctcattt
     1921 ctcttttgag tttattccag tttgtagacg tttcagtctg attgttccat ctggtgaggg
     1981 atcctctcat tcctaccctg tatttaacta ggtcactctc aggcacacag aaggctctgg
     2041 cctggcctct catttccact gcccacctct caaacagcaa tggagaaggg tcaccagaaa
     2101 tagcctggca tgagttgctc agggtttccg gatgactggc taggaactta tttcatagtt
     2161 cagggacaag acttcataca taggataaca aatcaatagg caggaattag aactcttccc
     2221 ctgaccgtac tcccctgctc cccaaacggt gcccgttgac atcacgaagg atgctggctg
     2281 gcttcaccct caccctcgtg taaccctctg caatttcact ttgggtcagt gaaaacaaaa
     2341 aaccaaggac ttactatgta gcacaagatg gcttcaaatg tgtgatcccc atgctgagtt
     2401 ctgggactac aagtgtgtac catcacaccc gaactaactt tgggagggca gctttaatgt
     2461 agaagataga ctatctccat gaaatcggtc ttagggtgcc acactccgaa tccctttctg
     2521 ttagaggcgg agtcccaggt ttactctccc cctccacaag aattgcctgt tttcatcgtt
     2581 gtcggtgcca cagagtccca cctagaatgg aagtactcaa ccccacggca gtgtgcttaa
     2641 cacacagatg ggactctgtt ctgtcaccgg aattctctgt gactggctca ccctatgcag
     2701 taacagctca gcttctttca ctgtcctttg gaaggactgt ccgtctagat gatggcttga
     2761 agtacatcaa gccaggtctt tgctccagag ctgtcatgaa atgtctactg agatattagc
     2821 tgtggcaaaa taaaataggc tttgtgaa
//
