LOCUS       XM_006506756            5367 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus TRPM8 channel-associated factor 1 (Tcaf1),
            transcript variant X4, mRNA.
ACCESSION   XM_006506756
VERSION     XM_006506756.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000072.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006506756.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5367
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="6"
     gene            1..5367
                     /gene="Tcaf1"
                     /gene_synonym="2810407D09Rik; 3321401G04Rik;
                     A230020K05Rik; Fam115a"
                     /note="TRPM8 channel-associated factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 mRNAs, 27 ESTs, 2512 long SRA reads, 16 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 51 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:77574"
                     /db_xref="MGI:MGI:1914665"
     CDS             252..3020
                     /gene="Tcaf1"
                     /gene_synonym="2810407D09Rik; 3321401G04Rik;
                     A230020K05Rik; Fam115a"
                     /codon_start=1
                     /product="TRPM8 channel-associated factor 1 isoform X2"
                     /protein_id="XP_006506819.1"
                     /db_xref="GeneID:77574"
                     /db_xref="MGI:MGI:1914665"
                     /translation="MATPSAAFEALMNGVTSWDIPEDSVPCELLLIGEASFPIMVNDV
                     GQVLVAASSYGRGRMVVASHEDFLLESQLFVFLVNAVGWLRSSPNSAIGVHSSLAPLV
                     KILESCGIESKIEPEVNDSLGVYCIDAYNETMTDKLVQFVKRGGGLLIGGEAWDWDTQ
                     GDDDRVLFAFPGNLVTSVAGVYFTDNKADTSFFKVSKKMPKIPILVRCDDDLSDDRDE
                     LLRGIIDLDITNSDCFPSQLLVHGSLAFPLGLDTYHGCVIAAARYGRGRVVVTGHKVL
                     FTVGKLGPFLLNAVRWLDGGRKGKIVVQTELRTLSGLLAVGGIDTSIEPHLTSDASVY
                     CFEPTSDVGVKELQEFVAEGGGLFVGTQAWWWAFKNPGVSPLARFPGNLLLNAFGISI
                     TSQSLNPGPFRTPKIGTRTYHFRSTLAEFQVIMGRKRGNVEKGWLAKLGPDGATFLQI
                     PAEEIPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRGAMLSLATGLAHSGSDLSL
                     LIPEIEDVYSSRYLRPSASPITVNVNCTNPGTRYCWMSTGLYIPGRQVIDVSVPESAA
                     SADLKIQIGCHTDDLTRASKLFRGPLVINRCCLDKPTKSITCLWGGLLYIIVPQNSKL
                     GSVPLTVKGAVRAPFYKLGETSKEEWKRRLLEYPGPWGELATDNIILTVPTANLRTLE
                     NPEPLLRLWDEMMQAVAKLGGETFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQE
                     LINEKLIRTKGLWGPVHELGRNQQRQEWEFPPHTTEATCNLWCVYVHETVLGIPRSRA
                     NIALWPPVREKRVRIYLSKGPSVKHWNAWTALETYLQLQEAFGWEPFIRLFTEYRNQT
                     TSSSPPSDNVDKMNLWVKMFSQQVQRNLAPFFEAWGWPIQKEVATSLAYLPEWKENIM
                     KLYLLTQM"
ORIGIN      
        1 aagaagcgct gtctattggc aagcgccgcc cctcgggctc ctactccagc cgggaggaag
       61 tggggaggag actgactggg aacccctcct ctcctctggc tccgttctcc tccccgttac
      121 gctccaggct ttcggcggct gctcggaggc gacttggtgc tccgccgaga atcccctgtt
      181 cagccctcct ggtgcggtcc tagaagggcc aacccagctg cctggtggaa tcgcaggaaa
      241 ccaacagaac catggcaact ccctctgctg cctttgaggc ccttatgaat ggagtaacga
      301 gttgggatat ccccgaggat tctgttccat gtgaactgct tcttattgga gaggcttcat
      361 ttcctataat ggtgaatgac gtgggccagg tcctcgttgc cgcctcttcc tatggcagag
      421 gccgcatggt ggtagcatct catgaggact tcttgctgga aagccagctc tttgtctttc
      481 ttgtcaatgc tgttgggtgg cttcgttcct cccctaactc agccattggt gtgcactcat
      541 ctttagcacc attggtgaaa attctcgaga gctgtggaat agagtcaaag attgagccag
      601 aagtcaatga ctccctgggg gtttactgca ttgatgccta caatgaaacc atgacagata
      661 agctagtcca gtttgtgaaa cgtggagggg gcttgctcat aggaggcgaa gcatgggatt
      721 gggataccca gggtgatgat gatagagttc tgttcgcatt tcctgggaat ctggtgacca
      781 gtgtggctgg tgtgtacttc actgacaaca aagcagacac aagtttcttt aaagtctcca
      841 agaagatgcc taagataccc atcttagttc gttgtgatga cgacctctca gatgacagag
      901 atgagcttct gcgtggcata atagacctgg acatcaccaa ctcggactgc ttcccatccc
      961 agctactagt tcatgggtct ttggcttttc ctttggggct agatacctac catggctgtg
     1021 tgatagctgc agctcgctat ggccggggtc gggtagttgt aactggtcat aaggttttat
     1081 ttactgtggg taaactcggc ccctttttgc tcaatgctgt ccgctggctg gatggtggcc
     1141 gcaaaggcaa gattgtggta cagacagagc tgagaacact aagtggtctg ctcgcagtag
     1201 ggggtataga caccagcatt gagccccacc tgaccagtga cgcaagtgtc tattgttttg
     1261 aacccacaag cgatgtgggg gttaaggaac tacaggagtt tgtagcagag ggtggtgggc
     1321 tgtttgttgg aactcaagcc tggtggtggg cttttaagaa cccaggagtg tcccctctgg
     1381 ctcgattccc aggaaacctg ctcctcaatg cctttggtat cagcatcaca agccagagtc
     1441 tcaatccagg acctttccgt acccctaaaa taggaacaag gacctatcac ttccgctcta
     1501 ccctagcaga gttccaggtg ataatgggca ggaagagagg gaatgtggag aagggctggc
     1561 tagccaagct aggcccagat ggggcaactt tcctgcagat tcctgcagaa gagatccctg
     1621 cttacatgtc tgtgcacaga ctcctgagga agctgctgag ccgctatcgg cttccagtgg
     1681 caaccagaga gaacccggtc atcaatgact gttgtagggg agccatgctt tccctggcca
     1741 caggtctggc ccactctgga agtgacctct cactgctgat cccagaaatt gaagacgtgt
     1801 acagcagccg ctacctgcgc ccctcagcgt ctcccatcac cgtgaatgtc aattgcacta
     1861 atccaggcac tcgatattgc tggatgagca ccggactcta catacctgga aggcaagtca
     1921 tagatgtctc cgtgcctgag agtgctgcct ctgctgacct gaagatacaa attggctgtc
     1981 atactgatga tctgacaagg gccagcaagc tgttccgagg cccccttgtg attaaccggt
     2041 gttgcttgga caaacccacg aaatcaatca cctgcctctg gggtggtctc ctctatatca
     2101 ttgtgcctca gaatagcaaa ctgggttctg tgccccttac agtgaagggg gctgttcgtg
     2161 ctccattcta caagctaggg gagacatcca aggaagaatg gaagaggcgt ctcctggaat
     2221 atccaggtcc atggggagaa ctggccactg acaacatcat cctgactgtg cccactgcaa
     2281 atcttcgaac gctggagaat cctgagccac tgctccgcct ctgggatgag atgatgcagg
     2341 ctgtggctaa gctgggaggc gagaccttcc ctttgcgtct gccacagagg atagtggctg
     2401 atgttcagat ctcagtaggc tggatgcacg cagggtaccc catcatgtgc catctggagt
     2461 cagtgcagga actcatcaac gagaagctca tccggaccaa ggggctctgg ggccctgtgc
     2521 atgagctggg ccgcaatcag cagaggcagg agtgggagtt ccccccacat actacggaag
     2581 ccacgtgcaa cctgtggtgt gtttacgtgc atgaaacggt cctgggcata ccccgaagcc
     2641 gtgccaatat tgcgctatgg cctccagttc gggagaagag agtccgaatc tacttgagca
     2701 agggacccag tgtgaaacac tggaacgcct ggactgcgtt ggaaacgtac ctacagctcc
     2761 aagaggcctt tggttgggag ccatttattc gtctcttcac cgagtacaga aaccagacaa
     2821 catcgagctc gccgccctca gacaacgtcg acaaaatgaa tctatgggtc aagatgttct
     2881 cccagcaagt gcagaggaat ctggctccat tctttgaggc ctggggctgg cctatccaga
     2941 aggaagtggc tacaagctta gcctatctgc ccgaatggaa agagaatata atgaaattgt
     3001 acctcctcac acagatgtaa ggagtgccca tcgaggtggc aggccccact gaaactgaag
     3061 tccaggaata caaaagaaaa ctgagacctc tcagcaaagg agactaaaag catttggttg
     3121 gagaagatct caacaaattt caggaagaga gaaagtaaat gaagagaaat aatgatcggg
     3181 aaacatggcg gtccatttca gacagaatat actgatccga acactggaac cccaaagaga
     3241 cttgagcact agaaaactct agctactaaa taattatacc agttgtaaat tgacccccag
     3301 tctactcagc cccgaccctt gtacatagaa aacagaaaac ctaccactga aactagtgaa
     3361 actgttattg ttactgttgt ttgaataaag aaatcaaata aaccacctga ggagaggtaa
     3421 aaaattagtg ctccaaagga tattctttcc atggaaataa gtgccccact agcctgtcag
     3481 gtaattttct tctcagaggt gacaccctta ctcacaccct aaaagcccac agcttctagg
     3541 tatagcagac atttgctgga gaaacaggac tcatttaacg agctgatagt taacaaagat
     3601 tctcagcatg gatttcctga tagaattttt catacatcga agggtccaag gaagaagcat
     3661 aaagaaaata accacttaga cataaaaagc ttgaggaatt ataaactaat ggaagcataa
     3721 tttataagga aaaatctgta aaattctgac catttctcca agagagactt gaggtgcatt
     3781 actaagagaa aatcctgaac attgtaaaag caaaacgaga tggccataaa ttttcatcat
     3841 atagactgga aaacaagata gaatgaatct ttccagacat gcatcaaaat gaaatatcac
     3901 acaattgaaa agaaggaaag ggaaacagac aatcactgtg taactcttag gagtttccag
     3961 aaggcagcac agaaagcctg gacagtgaga gaataagaaa gacttgagga acagcagagg
     4021 gacggcaccc agtaccaacc acatctaggc agggtcctaa agaaaagtgg aaacaggagg
     4081 gctagaagga acatgttgaa agtgcccagg gaagggaaag aggctgaacc aaacctgaga
     4141 attctagcag tgctgaatgc tagaagtcaa agaaccaatg gttgactttt gaaaactttt
     4201 gttcccagaa ttccatatag tacagactgt caagagtaat ataaaaagaa aaacattttt
     4261 ggcagggaag tctttagaaa ctctccctcc cccctttgta cccttattaa ggaagttttc
     4321 catttaaaag aaaactttct ttccatatat atgtggaaga aagtccaaaa aagaaaagga
     4381 aagaagatct ggagacagtg gccctcactc agggtgtctc tgtctagagt ggtagatatc
     4441 agaagagagc actaccctgg gctctgtgaa gaatatgcca gagtagcact gaggagatgg
     4501 gacatttgga gatatgaaaa gcatgcagtc tttaatcaca aaaattaaac agaatgtcaa
     4561 gaaatttggg ctgagccatg aaggaaaata gaatgggata ggatttcaaa gtctcgtgga
     4621 gtatgagaag agactgattg ggcactggca gtaggtatgt ttcctttcct ttgatatggg
     4681 tatcatggca ttgggagtgt agagaaaatt aagtttcttc cacttggctt ggtaaaagta
     4741 ttttaatagc ccaaataatg tatagatgcc acttatagat cttcaatggt ttgatcagcc
     4801 tatcaacaaa gactgaaagg tttaatgtta cactcatatc agagatagaa agggatgttg
     4861 atcagttgat gcacaaaact atagctgaat tagttgagag aagggaagta aaaggaaaaa
     4921 aatggggcta cttaaatatt caaagtgtgg atgaaaagct gctgtcttcc gataatagaa
     4981 cacagttgta tggttagtgt gctggccaat gctataaatt agaccctcaa aagaatatct
     5041 accaagcatt tggagaagag taggcaggag aaaggtggag gtggtgtatg ttaaagcatt
     5101 atcttttgta atggtgaaag attaaagata gtctaatgtt aataagtcaa gagattattg
     5161 ttcaaacatg ttatgtaaag gtaggaagtt agccaacaga agatccaaaa atagatatta
     5221 aaagcatcta agaaatgaga ctatagaagg agggtggggt gggaaccgtg tttttattta
     5281 atgttccgct gtactattta attttttttt taccttgtgc atgtattatt tggaaaagtt
     5341 tataataaac tcaaataaaa catcctt
//
