LOCUS       NM_001081368            2830 bp    mRNA    linear   ROD 01-AUG-2024
DEFINITION  Mus musculus TBCC domain containing 1 (Tbccd1), transcript variant
            1, mRNA.
ACCESSION   NM_001081368 XM_900697
VERSION     NM_001081368.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2830)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2830)
  AUTHORS   Jiang,D., Burger,C.A., Casasent,A.K., Albrecht,N.E., Li,F. and
            Samuel,M.A.
  TITLE     Spatiotemporal gene expression patterns reveal molecular
            relatedness between retinal laminae
  JOURNAL   J Comp Neurol 528 (5), 729-755 (2020)
   PUBMED   31609468
REFERENCE   3  (bases 1 to 2830)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643. PMID: 29144450]
REFERENCE   4  (bases 1 to 2830)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   5  (bases 1 to 2830)
  AUTHORS   Lau,N.C., Seto,A.G., Kim,J., Kuramochi-Miyagawa,S., Nakano,T.,
            Bartel,D.P. and Kingston,R.E.
  TITLE     Characterization of the piRNA complex from rat testes
  JOURNAL   Science 313 (5785), 363-367 (2006)
   PUBMED   16778019
REFERENCE   6  (bases 1 to 2830)
  AUTHORS   Girard,A., Sachidanandam,R., Hannon,G.J. and Carmell,M.A.
  TITLE     A germline-specific class of small RNAs binds mammalian Piwi
            proteins
  JOURNAL   Nature 442 (7099), 199-202 (2006)
   PUBMED   16751776
REFERENCE   7  (bases 1 to 2830)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF749564.1, BC082558.1, CT027991.8 and BC079629.1.
            
            On Oct 24, 2015 this sequence version replaced NM_001081368.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Variants 1 and 2 both encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082558.1, AK133804.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138, SAMN01164143
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-131               CF749564.1         1-131
            132-685             BC082558.1         1-554
            686-686             CT027991.8         174287-174287
            687-2802            BC082558.1         556-2671
            2803-2830           BC079629.1         1310-1337
FEATURES             Location/Qualifiers
     source          1..2830
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 13.67 cM"
     gene            1..2830
                     /gene="Tbccd1"
                     /gene_synonym="5730478M09Rik"
                     /note="TBCC domain containing 1"
                     /db_xref="GeneID:70573"
                     /db_xref="MGI:MGI:1917823"
     exon            1..325
                     /gene="Tbccd1"
                     /gene_synonym="5730478M09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            326..704
                     /gene="Tbccd1"
                     /gene_synonym="5730478M09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            705..860
                     /gene="Tbccd1"
                     /gene_synonym="5730478M09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            861..1227
                     /gene="Tbccd1"
                     /gene_synonym="5730478M09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1228..1414
                     /gene="Tbccd1"
                     /gene_synonym="5730478M09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1415..1912
                     /gene="Tbccd1"
                     /gene_synonym="5730478M09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1913..2060
                     /gene="Tbccd1"
                     /gene_synonym="5730478M09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2061..2803
                     /gene="Tbccd1"
                     /gene_synonym="5730478M09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2728..2733
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tbccd1"
                     /gene_synonym="5730478M09Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2746
                     /gene="Tbccd1"
                     /gene_synonym="5730478M09Rik"
                     /note="major polyA site"
     regulatory      2778..2783
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tbccd1"
                     /gene_synonym="5730478M09Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2798
                     /gene="Tbccd1"
                     /gene_synonym="5730478M09Rik"
ORIGIN      
        1 aggagccgag aaagagcgcg ctgctgtagg aaacccgaat gtccaccaat cgcgaggctc
       61 cttcccgatt ccgaccaatt gcttgagaga ggtcttacta ccagtctgga agctacgcca
      121 tgtgcacacg tgacttgcga gcgctcaccg aagtgcaacc ccaggaggtg tcaaagtacg
      181 tggggcgtct tgcctgggga taggctctcc cagtactaac ttattacagt ctcgctaccg
      241 tggaaaagag ggacctggta ccttgtagag acgccgccat agagaccgac ttaagttaag
      301 attcggcttc cagcactccg tagcggtatg ccaagaagcc tgtttgtcct gctgccttca
      361 gagagacgat ggatcagtcc ggagttctcc tctgggtgaa ggcagaacct tttcttgtgg
      421 gtgccttgca ggagccacct ccgtccaaat tcagccttca ctaccttaga aagatagcca
      481 cctatgtgcg aactcgggcc acagagggcg cctacccaca cctgtactgg cctacctgga
      541 ggcacattgc gtgcggaaag ctgcagttgg ctaaggatct agcgtggctt tactttgaaa
      601 tgtttgataa tctttctgtg aggacacctg aagaacgcct ggaatggtct gaaattttgt
      661 ccaactgcgc aaccgaagag gaagttgaaa agcaaagaag tcagctttat gtggacacgc
      721 tgcaattcct gctctttctg tatatccagc agttaaacag gatctctctg cggacatcat
      781 tgattgggga agaatggccc agtcgcagaa gcagacctca gtctcctagc ccggctgaaa
      841 ggcccagttg tcacaataag aattggaatg actacagtca ccaggctttt gtctgtaatc
      901 atctgtcaga gctcctcgag ctgcttctag acccagagca gctcactgcc tcctttcact
      961 cgacccacag cagtctgctc tcccgggatg ctgtcacggc gctcagcttt ctcattgaag
     1021 gcaccgtgag cagagccaag aaggtctatc cccttcatca acttgcactg tggcaaccac
     1081 tgcacgtagc aagtggcttc tcaaagagct ctaagacttt ctctctctac aagctggaag
     1141 catggttgag ggcctctttg accacaaatc cgtttggtcc atctgcttgc ctcaagtctg
     1201 gaaagaaatt ggcttgggct caccaagttg aaggttcgac caaaagagcc aagattgctt
     1261 gcaatgctca catggctcct cggttgcacc gcatcgtggt gatgagccag gtttacaagc
     1321 agacactggc caagagctca gaaactctag taggagcaca tgtcagggct catcgctgca
     1381 gtgagtcttt tatatatctg ctctccccct tacgatccat gacaattgaa aaatgcagga
     1441 atagtacctt tgtgttgggt cctgtggaga cgactcttca cctacatgac tgtgagaatc
     1501 taaaagtcat tgctgtttgc caccgactgt ccatctcttc tacaacaagc tgcacctttc
     1561 acattatgac accttcacgt ccacttattc tctctggaaa ccagacagta acttttgccc
     1621 cctttcatac ccattaccca atgctggagg accacatggc caggactggc cttgctacag
     1681 tgcctaacta ttgggataac ccgatggtgg tgtgcaaaga aggctctgtc acaagtctct
     1741 tccggctctt gcctccttct gagttctaca tatttgttat tccctttgag atggaagggg
     1801 acacagcaga gatacctggg ggtctcccct ctgcctacca gaaagcactg gctcaaagag
     1861 aagagagcat acatatctgg cagaaaactg tgaaggaggc tcgtttgaca aaggagcaga
     1921 ggaagcagtt ccaggcccta gtggagaaca agttctatga gtggttggtt agcaccggac
     1981 atcggcagca gctggacagc cttgtgccca ctccagcagc ctcctgacaa gtggctgcat
     2041 aggaccacat ggagccacgg ggctctggaa acgtgaggag gaacggaagg tgatgcccct
     2101 gaagcctgtt ggaaaggcat ccttgctgcc tgcgagacct caaggcttct ctgtattcaa
     2161 gaccttttgc tggttcctgt tctgtactca cctaggttga actttagcca aacttctgac
     2221 ttcataaagc atcttactgt agaaggtcag gaggtcacac ggctggggct gaaacggaac
     2281 actgggcaca gcagctctgt gtgtaagtta gtgtctcagt gaccagtaca ggcttcccag
     2341 ctgactccac attttaattt gtacgatgaa agggttttgt cctagctaaa aaagttagcc
     2401 aggtgtggtg gcacatactt gtagtcccag ggctcagcag gcagaggcag gcagatctct
     2461 gcaagttcca ggccagcctg ctctacatgg tgaggatcct gtgtctcaga aacaagcaaa
     2521 caagcacaca caaaagaaag gaaggaaaag aaagaacagt tgtgtggttc tttgtaactt
     2581 gctactctct ttttaaaaag agtgacagaa tggtcagttg gtgcataaat atggcagaga
     2641 tagttttata aaacggtact ttaggcctta acatataaaa cacatgaaat tgtataaatt
     2701 gttttattat tttctgcttt aaatttcaat aaactctaaa aagtaacttt ttctcctttg
     2761 gtttcacttt taatcttaat aaaaggtttc tgctgttact cttaaaaaaa aaaaaaaaaa
     2821 aaaaaaaaaa
//
